Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47225 * 2 1 4 4 H 1.08994 * 109.46867 * 305.55951 * 3 2 1 5 5 C 1.50698 * 109.47084 * 185.55817 * 3 2 1 6 6 H 1.08004 * 119.99888 * 240.00187 * 5 3 2 7 7 C 1.37869 * 120.00074 * 59.99888 * 5 3 2 8 8 N 1.31515 * 120.00226 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00139 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46891 * 60.00025 * 9 7 5 11 11 H 1.48499 * 109.47170 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47202 * 300.00424 * 9 7 5 13 13 N 1.46900 * 109.46916 * 65.55746 * 3 2 1 14 14 C 1.46902 * 110.99857 * 205.85068 * 13 3 2 15 15 H 1.08991 * 109.47144 * 326.91122 * 14 13 3 16 16 C 1.50700 * 109.47416 * 206.90652 * 14 13 3 17 17 C 1.38268 * 119.94414 * 319.73645 * 16 14 13 18 18 C 1.38145 * 120.05417 * 179.72350 * 17 16 14 19 19 C 1.38733 * 119.94349 * 0.56133 * 18 17 16 20 20 O 1.35900 * 120.05566 * 179.68163 * 19 18 17 21 21 C 1.42896 * 116.99968 * 0.02885 * 20 19 18 22 22 C 1.38724 * 119.88819 * 359.70880 * 19 18 17 23 23 C 1.38146 * 119.94695 * 359.97438 * 22 19 18 24 24 C 1.53004 * 109.46894 * 86.91397 * 14 13 3 25 25 C 1.53005 * 117.49858 * 185.94507 * 24 14 13 26 26 C 1.53007 * 60.02960 * 252.51738 * 25 24 14 27 27 H 1.09000 * 109.47237 * 301.18952 * 1 2 3 28 28 H 1.09009 * 109.46748 * 61.18384 * 1 2 3 29 29 H 1.08996 * 109.47428 * 181.18790 * 1 2 3 30 30 H 1.08997 * 109.47501 * 239.99933 * 2 1 3 31 31 H 1.08998 * 109.46806 * 119.99524 * 2 1 3 32 32 H 0.97003 * 120.00577 * 179.97438 * 8 7 5 33 33 H 1.00904 * 111.00412 * 329.80870 * 13 3 2 34 34 H 1.08001 * 119.97378 * 359.96545 * 17 16 14 35 35 H 1.08003 * 120.02607 * 180.24960 * 18 17 16 36 36 H 1.09001 * 109.47113 * 299.99547 * 21 20 19 37 37 H 1.09001 * 109.47894 * 59.99445 * 21 20 19 38 38 H 1.09001 * 109.47323 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.02958 * 179.97438 * 22 19 18 40 40 H 1.08001 * 119.97700 * 179.97438 * 23 22 19 41 41 H 1.09001 * 115.55912 * 331.62805 * 24 14 13 42 42 H 1.08997 * 117.49811 * 145.01809 * 25 24 14 43 43 H 1.08999 * 117.49693 * 0.02562 * 25 24 14 44 44 H 1.08999 * 117.50073 * 107.47550 * 26 25 24 45 45 H 1.08994 * 117.49617 * 252.47525 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5407 1.4447 -0.1376 6 1 4.1532 1.8867 0.6344 7 6 4.1319 0.8824 -1.2490 8 7 3.3862 0.3445 -2.1893 9 14 5.9921 0.8857 -1.4199 10 1 6.5951 0.1481 -0.2808 11 1 6.3732 0.2264 -2.6947 12 1 6.4867 2.2860 -1.4202 13 7 1.6630 2.0952 1.2609 14 6 1.5630 3.5509 1.0908 15 1 2.2945 3.8816 0.3536 16 6 1.8347 4.2305 2.4081 17 6 1.3291 3.6948 3.5783 18 6 1.5816 4.3128 4.7877 19 6 2.3333 5.4782 4.8263 20 8 2.5776 6.0915 6.0142 21 6 2.0302 5.4808 7.1843 22 6 2.8347 6.0166 3.6503 23 6 2.5850 5.3913 2.4440 24 6 0.1559 3.9128 0.6111 25 6 -0.1102 5.3731 0.2399 26 6 -0.6988 4.7922 1.5272 27 1 -0.3634 0.5322 0.8791 28 1 -0.3633 0.4954 -0.9005 29 1 -0.3634 -1.0274 0.0213 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8021 -0.0508 -2.9714 33 1 0.8018 1.7133 1.6223 34 1 0.7396 2.7905 3.5471 35 1 1.1898 3.8918 5.7019 36 1 0.9447 5.4350 7.0962 37 1 2.4291 4.4717 7.2882 38 1 2.2993 6.0696 8.0613 39 1 3.4199 6.9240 3.6776 40 1 2.9748 5.8103 1.5281 41 1 -0.3550 3.1448 0.0303 42 1 -0.7962 5.5657 -0.5849 43 1 0.7173 6.0758 0.3371 44 1 -0.2583 5.1125 2.4714 45 1 -1.7720 4.6031 1.5493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183710.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = -3.813477 kcal Electronic energy + Delta-G solvation = -23576.376433 eV Core-core repulsion = 20366.199681 eV Total energy + Delta-G solvation = -3210.176752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25821 -39.80810 -37.71598 -37.01510 -34.26452 -32.96641 -31.92567 -30.80595 -28.75658 -27.91154 -26.09314 -24.48473 -23.59498 -23.10447 -22.67232 -21.36877 -20.68292 -19.00222 -18.24842 -17.21979 -17.15092 -16.61073 -16.55975 -16.28099 -15.78426 -15.44426 -15.28819 -14.70782 -14.53746 -14.35526 -14.11759 -13.75489 -13.43727 -13.35846 -13.18734 -12.89565 -12.73705 -12.66078 -12.53829 -12.35375 -12.21483 -11.97586 -11.75323 -11.62315 -11.50151 -11.44507 -11.33495 -10.92098 -10.78781 -10.40015 -9.83932 -8.95391 -8.87856 -8.03722 -6.14813 0.49278 0.57597 1.41765 1.42403 1.50311 2.45146 2.45857 2.88411 2.92135 3.21245 3.69719 3.89455 3.96880 4.02220 4.05809 4.18363 4.25656 4.37845 4.44505 4.51085 4.54901 4.59585 4.61050 4.70329 4.73682 4.77503 4.80429 4.88046 4.91769 5.04334 5.14359 5.17717 5.21730 5.29430 5.31783 5.39908 5.43303 5.53230 5.63844 5.77741 5.85595 5.90554 5.95953 6.41156 6.53626 6.58239 6.99246 7.06352 7.54060 8.98720 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014766 B = 0.004870 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.763775 B = 5748.349473 C = 6527.232637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.230 3.770 4 H -0.027 1.027 5 C -0.508 4.508 6 H 0.045 0.955 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.673 5.673 14 C 0.169 3.831 15 H 0.054 0.946 16 C -0.092 4.092 17 C -0.061 4.061 18 C -0.207 4.207 19 C 0.108 3.892 20 O -0.336 6.336 21 C 0.019 3.981 22 C -0.159 4.159 23 C -0.090 4.090 24 C -0.188 4.188 25 C -0.174 4.174 26 C -0.159 4.159 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.259 0.741 33 H 0.329 0.671 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.126 0.874 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.010 9.656 13.854 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.122 3.878 4 H -0.009 1.009 5 C -0.547 4.547 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.304 5.304 14 C 0.059 3.941 15 H 0.072 0.928 16 C -0.093 4.093 17 C -0.079 4.079 18 C -0.225 4.225 19 C 0.063 3.937 20 O -0.250 6.250 21 C -0.075 4.075 22 C -0.178 4.178 23 C -0.109 4.109 24 C -0.208 4.208 25 C -0.211 4.211 26 C -0.196 4.196 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.165 0.835 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.155 0.845 40 H 0.144 0.856 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.231 9.732 13.964 18.493 hybrid contribution 0.268 -0.425 -1.098 1.207 sum -6.962 9.307 12.866 17.339 Atomic orbital electron populations 1.21745 0.96282 1.01112 1.00369 1.21597 0.94194 0.99136 1.01085 1.18861 0.93586 0.90446 0.84897 1.00901 1.21430 0.93055 1.36269 1.03922 0.93717 1.25585 1.01749 0.95491 0.95676 1.69982 1.36043 1.40023 1.09814 0.85764 0.81484 0.78124 0.77129 1.20110 1.20870 1.20185 1.60684 1.37089 1.02074 1.30553 1.19750 0.93194 0.88538 0.92666 0.92797 1.19692 0.99089 0.95469 0.95055 1.20773 0.97760 0.98347 0.91014 1.21388 1.04345 0.97211 0.99563 1.19081 0.96057 0.92568 0.85950 1.86017 1.73290 1.51774 1.13947 1.23305 0.99282 0.99637 0.85296 1.20463 1.04709 1.02681 0.89924 1.20923 0.97362 0.95017 0.97576 1.23056 0.97711 0.94855 1.05207 1.22929 1.03574 0.95178 0.99447 1.23098 0.99069 1.02607 0.94782 0.92443 0.94512 0.92475 0.91488 0.94680 0.93165 0.85158 0.85565 0.83501 0.91653 0.92268 0.86292 0.84523 0.85632 0.89176 0.88182 0.88961 0.88356 0.87917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.07 9.77 71.98 0.70 -4.37 16 2 C -0.12 -5.68 5.36 30.60 0.16 -5.52 16 3 C 0.23 11.42 1.83 44.17 0.08 11.50 16 4 H -0.03 -1.47 7.71 -2.39 -0.02 -1.49 16 5 C -0.51 -28.51 8.55 25.60 0.22 -28.29 16 6 H 0.04 2.59 7.81 -2.91 -0.02 2.57 16 7 C 0.01 0.73 5.29 84.65 0.45 1.18 16 8 N -0.92 -53.01 11.29 21.44 0.24 -52.77 16 9 Si 0.95 44.93 29.54 68.60 2.03 46.95 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.67 -27.74 5.48 -477.16 -2.61 -30.36 16 14 C 0.17 6.28 2.34 44.17 0.10 6.38 16 15 H 0.05 2.38 7.51 -2.39 -0.02 2.37 16 16 C -0.09 -2.99 3.28 -19.85 -0.07 -3.06 16 17 C -0.06 -1.76 7.91 22.25 0.18 -1.58 16 18 C -0.21 -5.24 9.04 22.37 0.20 -5.04 16 19 C 0.11 2.90 6.69 22.50 0.15 3.05 16 20 O -0.34 -8.00 10.50 -92.42 -0.97 -8.97 16 21 C 0.02 0.28 9.81 113.37 1.11 1.39 16 22 C -0.16 -4.45 9.99 22.36 0.22 -4.22 16 23 C -0.09 -2.76 9.65 22.25 0.21 -2.55 16 24 C -0.19 -5.98 5.51 -10.77 -0.06 -6.03 16 25 C -0.17 -4.70 10.13 30.60 0.31 -4.39 16 26 C -0.16 -4.04 9.44 30.62 0.29 -3.75 16 27 H 0.06 1.85 6.42 -2.39 -0.02 1.83 16 28 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 3.59 5.94 -2.39 -0.01 3.58 16 31 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.33 12.11 5.65 -89.69 -0.51 11.60 16 34 H 0.13 3.52 7.31 -2.91 -0.02 3.50 16 35 H 0.15 2.88 6.30 -2.91 -0.02 2.86 16 36 H 0.06 0.81 7.66 -2.39 -0.02 0.80 16 37 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 40 H 0.13 3.69 8.03 -2.91 -0.02 3.67 16 41 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.09 2.49 8.13 -2.39 -0.02 2.47 16 44 H 0.10 2.56 5.65 -2.39 -0.01 2.55 16 45 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -62.87 357.86 3.42 -59.45 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.46 Total: 30.99 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.27 Total: -45.29 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.37 Total: -83.13 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.97 Total: -8.97 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -62.87 3.42 -59.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183710.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.633 kcal (2) G-P(sol) polarization free energy of solvation -62.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds