Wall clock time and date at job start Tue Mar 31 2020 06:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47324 * 2 1 4 4 N 1.46501 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.37090 * 120.00297 * 265.55483 * 4 3 2 6 6 H 1.08000 * 120.00058 * 145.67377 * 5 4 3 7 7 C 1.38946 * 119.99970 * 325.67610 * 5 4 3 8 8 N 1.31407 * 120.00203 * 338.40829 * 7 5 4 9 9 Si 1.86804 * 119.99906 * 158.40652 * 7 5 4 10 10 H 1.48503 * 109.47052 * 90.00268 * 9 7 5 11 11 H 1.48499 * 109.46950 * 209.99720 * 9 7 5 12 12 H 1.48494 * 109.47037 * 330.00001 * 9 7 5 13 13 C 1.34779 * 119.99558 * 85.55812 * 4 3 2 14 14 O 1.21292 * 120.00390 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99685 * 179.97438 * 13 4 3 16 16 C 1.53002 * 109.47156 * 179.97438 * 15 13 4 17 17 C 1.50699 * 109.47156 * 179.97438 * 16 15 13 18 18 C 1.38247 * 120.00236 * 265.00137 * 17 16 15 19 19 C 1.38216 * 120.00043 * 179.97438 * 18 17 16 20 20 C 1.38261 * 119.99983 * 0.02830 * 19 18 17 21 21 C 1.50698 * 120.00006 * 179.97438 * 20 19 18 22 22 C 1.38207 * 119.99879 * 359.94969 * 20 19 18 23 23 C 1.38213 * 119.99825 * 84.73152 * 17 16 15 24 24 C 1.50705 * 119.99928 * 359.97438 * 23 17 16 25 25 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47606 * 300.00916 * 1 2 3 27 27 H 1.09005 * 109.46919 * 60.00398 * 1 2 3 28 28 H 1.09000 * 109.47606 * 239.99084 * 2 1 3 29 29 H 1.09005 * 109.46919 * 119.99602 * 2 1 3 30 30 H 1.09000 * 109.47184 * 59.99454 * 3 2 1 31 31 H 1.08996 * 109.46650 * 299.99618 * 3 2 1 32 32 H 0.96999 * 120.00231 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46795 * 60.00297 * 15 13 4 34 34 H 1.08991 * 109.47454 * 300.00500 * 15 13 4 35 35 H 1.09003 * 109.47371 * 300.00223 * 16 15 13 36 36 H 1.08997 * 109.46821 * 60.00523 * 16 15 13 37 37 H 1.08004 * 120.00323 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.99990 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.47389 * 89.99760 * 21 20 19 40 40 H 1.08999 * 109.47406 * 209.99675 * 21 20 19 41 41 H 1.09000 * 109.47153 * 330.00107 * 21 20 19 42 42 H 1.08004 * 120.00242 * 180.02562 * 22 20 19 43 43 H 1.09000 * 109.46906 * 90.00449 * 24 23 17 44 44 H 1.09001 * 109.47160 * 209.99958 * 24 23 17 45 45 H 1.08998 * 109.47337 * 329.99955 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5347 1.1845 6 1 5.1289 1.0151 1.3070 7 6 3.6764 2.2964 2.2269 8 7 2.8017 3.2451 1.9784 9 14 4.2293 1.9720 3.9815 10 1 5.4189 2.8063 4.2879 11 1 3.1295 2.3151 4.9184 12 1 4.5789 0.5367 4.1329 13 6 4.1793 1.3519 -1.1629 14 8 3.5733 1.2699 -2.2103 15 6 5.6863 1.3524 -1.1623 16 6 6.1969 1.2397 -2.6002 17 6 7.7039 1.2409 -2.5997 18 6 8.3943 2.4222 -2.7970 19 6 9.7765 2.4233 -2.7960 20 6 10.4686 1.2429 -2.5982 21 6 11.9756 1.2440 -2.5977 22 6 9.7783 0.0619 -2.4006 23 6 8.3958 0.0618 -2.3964 24 6 7.6431 -1.2249 -2.1747 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.4434 3.7772 2.7060 33 1 6.0497 0.5051 -0.5806 34 1 6.0492 2.2797 -0.7191 35 1 5.8340 0.3121 -3.0430 36 1 5.8335 2.0867 -3.1822 37 1 7.8537 3.3444 -2.9511 38 1 10.3159 3.3462 -2.9505 39 1 12.3385 1.4138 -1.5840 40 1 12.3398 0.2817 -2.9575 41 1 12.3386 2.0373 -3.2512 42 1 10.3189 -0.8602 -2.2457 43 1 7.4618 -1.7097 -3.1340 44 1 8.2327 -1.8859 -1.5394 45 1 6.6906 -1.0099 -1.6905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059934209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:04 Heat of formation + Delta-G solvation = -41.317324 kcal Electronic energy + Delta-G solvation = -23033.208707 eV Core-core repulsion = 19821.405666 eV Total energy + Delta-G solvation = -3211.803041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.63031 -38.48884 -35.31103 -34.36411 -32.81823 -32.17503 -31.33023 -30.65645 -27.19876 -26.86736 -25.66496 -24.51277 -22.74042 -21.80980 -20.60982 -19.72353 -18.98477 -16.78872 -16.09481 -15.84043 -15.32911 -14.71058 -14.59133 -14.34577 -14.15369 -13.95584 -13.75031 -13.17576 -13.02819 -12.96237 -12.80093 -12.47669 -12.27754 -11.96352 -11.86095 -11.80632 -11.49447 -11.33963 -11.26681 -11.00084 -10.90949 -10.83426 -10.64349 -10.56670 -10.33302 -10.31611 -10.13912 -9.71064 -9.07811 -8.57774 -8.43092 -8.10541 -7.49934 -6.37486 -4.04262 1.52302 1.57685 3.10067 3.20478 3.24294 3.87760 3.94772 4.11771 4.77673 4.88031 4.94351 5.00087 5.12264 5.26667 5.31050 5.48401 5.54074 5.64062 5.77217 5.77777 5.80811 5.81424 5.85457 5.92003 5.93872 6.01053 6.07841 6.19538 6.31479 6.38367 6.45429 6.54153 6.55897 6.65486 6.69604 6.72544 6.73697 6.83067 6.85414 7.00252 7.15731 7.23828 7.37935 7.52344 7.95203 8.39035 9.08600 9.55678 9.98969 10.63559 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.004275 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.021280 B = 6547.406851 C = 7476.708666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.113 3.887 4 N -0.439 5.439 5 C -0.338 4.338 6 H 0.089 0.911 7 C 0.043 3.957 8 N -0.858 5.858 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.466 3.534 14 O -0.609 6.609 15 C -0.111 4.111 16 C -0.065 4.065 17 C -0.075 4.075 18 C -0.109 4.109 19 C -0.126 4.126 20 C -0.098 4.098 21 C -0.110 4.110 22 C -0.122 4.122 23 C -0.078 4.078 24 C -0.120 4.120 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.107 0.893 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.117 0.883 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.517 -4.564 -4.659 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.011 4.011 4 N -0.156 5.156 5 C -0.466 4.466 6 H 0.107 0.893 7 C -0.162 4.162 8 N -0.495 5.495 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.255 3.745 14 O -0.496 6.496 15 C -0.151 4.151 16 C -0.103 4.103 17 C -0.075 4.075 18 C -0.127 4.127 19 C -0.144 4.144 20 C -0.098 4.098 21 C -0.167 4.167 22 C -0.140 4.140 23 C -0.078 4.078 24 C -0.177 4.177 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.125 0.875 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.135 0.865 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.135 0.865 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.085 -4.450 -5.029 12.116 hybrid contribution 0.297 0.022 1.125 1.164 sum 10.381 -4.428 -3.904 11.942 Atomic orbital electron populations 1.21655 0.96665 1.00365 1.01368 1.21829 0.94645 0.99580 1.01181 1.21452 0.81626 0.94439 1.03545 1.43498 1.04747 1.62509 1.04864 1.19411 1.07582 1.29520 0.90059 0.89299 1.25307 0.96998 0.93606 1.00327 1.69928 1.30059 1.16625 1.32868 0.86207 0.78457 0.79155 0.82529 1.20252 1.20698 1.19337 1.20437 0.89453 0.80876 0.83689 1.90510 1.70594 1.56716 1.31765 1.21322 0.94220 1.03639 0.95889 1.20374 0.88856 1.03633 0.97418 1.19956 0.96274 0.92623 0.98617 1.21076 0.93971 0.97774 0.99919 1.20946 0.94183 0.97313 1.01980 1.19805 0.95667 0.93502 1.00834 1.20739 0.91652 1.02268 1.02028 1.20832 0.93472 0.97418 1.02258 1.19780 0.93430 0.95271 0.99352 1.20889 1.00760 0.94139 1.01895 0.93690 0.93020 0.93167 0.92968 0.92467 0.87526 0.93131 0.92058 0.90457 0.89661 0.90689 0.90843 0.86024 0.86528 0.91482 0.91918 0.91878 0.86546 0.91359 0.91872 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.91 37.16 0.37 -2.08 16 2 C -0.13 -2.79 6.23 -26.73 -0.17 -2.95 16 3 C 0.11 2.74 4.92 -4.04 -0.02 2.72 16 4 N -0.44 -11.08 2.55 -114.81 -0.29 -11.38 16 5 C -0.34 -8.52 8.70 -14.94 -0.13 -8.65 16 6 H 0.09 2.15 6.98 -52.49 -0.37 1.78 16 7 C 0.04 1.09 4.94 -17.47 -0.09 1.00 16 8 N -0.86 -22.56 11.31 55.50 0.63 -21.93 16 9 Si 0.91 19.34 29.60 -169.99 -5.03 14.30 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 13 C 0.47 11.35 7.61 -10.98 -0.08 11.26 16 14 O -0.61 -16.00 15.64 5.55 0.09 -15.91 16 15 C -0.11 -2.23 4.15 -27.88 -0.12 -2.35 16 16 C -0.07 -1.15 3.94 -27.88 -0.11 -1.26 16 17 C -0.07 -1.17 5.13 -104.63 -0.54 -1.71 16 18 C -0.11 -1.60 9.68 -39.59 -0.38 -1.98 16 19 C -0.13 -1.64 9.70 -39.58 -0.38 -2.03 16 20 C -0.10 -1.22 5.88 -104.63 -0.62 -1.84 16 21 C -0.11 -1.02 10.01 36.00 0.36 -0.66 16 22 C -0.12 -1.58 9.36 -39.59 -0.37 -1.95 16 23 C -0.08 -1.13 5.88 -104.62 -0.62 -1.75 16 24 C -0.12 -1.57 9.22 36.01 0.33 -1.24 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.11 2.73 5.34 -51.93 -0.28 2.45 16 31 H 0.05 1.28 7.56 -51.93 -0.39 0.89 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 33 H 0.08 1.49 6.38 -51.92 -0.33 1.15 16 34 H 0.08 1.76 8.10 -51.93 -0.42 1.34 16 35 H 0.07 1.34 6.97 -51.93 -0.36 0.98 16 36 H 0.07 1.35 8.01 -51.93 -0.42 0.93 16 37 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 45 H 0.08 1.12 5.40 -51.93 -0.28 0.84 16 LS Contribution 364.14 15.07 5.49 5.49 Total: -1.00 -28.79 364.14 -9.15 -37.94 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.47 Total: 6.96 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.56 Total: -15.47 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.33 Total: -33.31 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.79 -9.15 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059934209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.382 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds