Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47324 * 2 1 4 4 N 1.46501 * 109.47148 * 179.97438 * 3 2 1 5 5 C 1.37090 * 120.00297 * 265.55483 * 4 3 2 6 6 H 1.08000 * 120.00058 * 145.67377 * 5 4 3 7 7 C 1.38946 * 119.99970 * 325.67610 * 5 4 3 8 8 N 1.31407 * 120.00203 * 338.40829 * 7 5 4 9 9 Si 1.86804 * 119.99906 * 158.40652 * 7 5 4 10 10 H 1.48503 * 109.47052 * 90.00268 * 9 7 5 11 11 H 1.48499 * 109.46950 * 209.99720 * 9 7 5 12 12 H 1.48494 * 109.47037 * 330.00001 * 9 7 5 13 13 C 1.34779 * 119.99558 * 85.55812 * 4 3 2 14 14 O 1.21292 * 120.00390 * 359.97438 * 13 4 3 15 15 C 1.50699 * 119.99685 * 179.97438 * 13 4 3 16 16 C 1.53002 * 109.47156 * 179.97438 * 15 13 4 17 17 C 1.50699 * 109.47156 * 179.97438 * 16 15 13 18 18 C 1.38247 * 120.00236 * 265.00137 * 17 16 15 19 19 C 1.38216 * 120.00043 * 179.97438 * 18 17 16 20 20 C 1.38261 * 119.99983 * 0.02830 * 19 18 17 21 21 C 1.50698 * 120.00006 * 179.97438 * 20 19 18 22 22 C 1.38207 * 119.99879 * 359.94969 * 20 19 18 23 23 C 1.38213 * 119.99825 * 84.73152 * 17 16 15 24 24 C 1.50705 * 119.99928 * 359.97438 * 23 17 16 25 25 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47606 * 300.00916 * 1 2 3 27 27 H 1.09005 * 109.46919 * 60.00398 * 1 2 3 28 28 H 1.09000 * 109.47606 * 239.99084 * 2 1 3 29 29 H 1.09005 * 109.46919 * 119.99602 * 2 1 3 30 30 H 1.09000 * 109.47184 * 59.99454 * 3 2 1 31 31 H 1.08996 * 109.46650 * 299.99618 * 3 2 1 32 32 H 0.96999 * 120.00231 * 180.02562 * 8 7 5 33 33 H 1.09007 * 109.46795 * 60.00297 * 15 13 4 34 34 H 1.08991 * 109.47454 * 300.00500 * 15 13 4 35 35 H 1.09003 * 109.47371 * 300.00223 * 16 15 13 36 36 H 1.08997 * 109.46821 * 60.00523 * 16 15 13 37 37 H 1.08004 * 120.00323 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.99990 * 179.97438 * 19 18 17 39 39 H 1.09003 * 109.47389 * 89.99760 * 21 20 19 40 40 H 1.08999 * 109.47406 * 209.99675 * 21 20 19 41 41 H 1.09000 * 109.47153 * 330.00107 * 21 20 19 42 42 H 1.08004 * 120.00242 * 180.02562 * 22 20 19 43 43 H 1.09000 * 109.46906 * 90.00449 * 24 23 17 44 44 H 1.09001 * 109.47160 * 209.99958 * 24 23 17 45 45 H 1.08998 * 109.47337 * 329.99955 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5347 1.1845 6 1 5.1289 1.0151 1.3070 7 6 3.6764 2.2964 2.2269 8 7 2.8017 3.2451 1.9784 9 14 4.2293 1.9720 3.9815 10 1 5.4189 2.8063 4.2879 11 1 3.1295 2.3151 4.9184 12 1 4.5789 0.5367 4.1329 13 6 4.1793 1.3519 -1.1629 14 8 3.5733 1.2699 -2.2103 15 6 5.6863 1.3524 -1.1623 16 6 6.1969 1.2397 -2.6002 17 6 7.7039 1.2409 -2.5997 18 6 8.3943 2.4222 -2.7970 19 6 9.7765 2.4233 -2.7960 20 6 10.4686 1.2429 -2.5982 21 6 11.9756 1.2440 -2.5977 22 6 9.7783 0.0619 -2.4006 23 6 8.3958 0.0618 -2.3964 24 6 7.6431 -1.2249 -2.1747 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5140 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 2.4434 3.7772 2.7060 33 1 6.0497 0.5051 -0.5806 34 1 6.0492 2.2797 -0.7191 35 1 5.8340 0.3121 -3.0430 36 1 5.8335 2.0867 -3.1822 37 1 7.8537 3.3444 -2.9511 38 1 10.3159 3.3462 -2.9505 39 1 12.3385 1.4138 -1.5840 40 1 12.3398 0.2817 -2.9575 41 1 12.3386 2.0373 -3.2512 42 1 10.3189 -0.8602 -2.2457 43 1 7.4618 -1.7097 -3.1340 44 1 8.2327 -1.8859 -1.5394 45 1 6.6906 -1.0099 -1.6905 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059934209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = -53.595023 kcal Electronic energy + Delta-G solvation = -23033.741108 eV Core-core repulsion = 19821.405666 eV Total energy + Delta-G solvation = -3212.335442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89324 -40.21670 -37.13522 -35.66918 -34.54074 -33.36249 -33.14503 -31.92820 -28.41568 -27.98931 -27.37527 -26.19845 -24.12088 -22.92094 -22.28531 -20.98278 -20.76524 -18.64934 -17.87327 -17.10254 -16.65691 -16.44397 -16.12675 -15.84437 -15.64235 -15.38129 -14.98129 -14.51899 -14.48212 -14.00927 -13.96837 -13.80102 -13.46615 -13.45740 -13.19484 -13.08080 -13.07189 -12.89448 -12.77361 -12.61025 -12.37945 -12.17976 -12.10672 -12.04647 -11.93684 -11.68357 -11.62424 -11.52392 -10.99149 -10.34886 -9.60898 -9.48035 -9.24188 -8.30549 -6.04359 0.45211 0.52511 1.40815 1.47766 1.59041 2.03091 2.31852 2.78867 3.01051 3.11118 3.89428 3.89751 4.07630 4.11874 4.17300 4.20578 4.31054 4.34805 4.42886 4.49711 4.57236 4.60192 4.69998 4.73234 4.80409 4.84237 4.89205 4.92735 4.96902 5.02706 5.03531 5.07189 5.09023 5.21192 5.24220 5.34661 5.36522 5.43329 5.45847 5.57779 5.61324 5.73411 5.84446 6.01570 6.19827 6.43087 7.12259 7.60127 8.03933 8.71652 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.004275 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.021280 B = 6547.406851 C = 7476.708666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.113 3.887 4 N -0.450 5.450 5 C -0.355 4.355 6 H 0.097 0.903 7 C 0.004 3.996 8 N -0.891 5.891 9 Si 0.980 3.020 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.260 1.260 13 C 0.451 3.549 14 O -0.636 6.636 15 C -0.096 4.096 16 C -0.050 4.050 17 C -0.099 4.099 18 C -0.123 4.123 19 C -0.132 4.132 20 C -0.096 4.096 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.088 4.088 24 C -0.119 4.119 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.028 0.972 32 H 0.272 0.728 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.139 0.861 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.141 0.859 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.630 -5.695 -3.683 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.011 4.011 4 N -0.168 5.168 5 C -0.482 4.482 6 H 0.115 0.885 7 C -0.199 4.199 8 N -0.528 5.528 9 Si 0.803 3.197 10 H -0.198 1.198 11 H -0.205 1.205 12 H -0.184 1.184 13 C 0.242 3.758 14 O -0.525 6.525 15 C -0.135 4.135 16 C -0.088 4.088 17 C -0.099 4.099 18 C -0.141 4.141 19 C -0.150 4.150 20 C -0.096 4.096 21 C -0.165 4.165 22 C -0.145 4.145 23 C -0.088 4.088 24 C -0.175 4.175 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.046 0.954 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.157 0.843 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.159 0.841 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.201 -5.585 -4.054 14.018 hybrid contribution -0.332 0.419 0.771 0.938 sum 11.869 -5.166 -3.283 13.355 Atomic orbital electron populations 1.21610 0.93646 1.02368 1.01699 1.21713 0.97257 0.96833 1.00408 1.21439 0.81640 0.96368 1.01656 1.43787 1.05246 1.62362 1.05366 1.19729 1.08200 1.30038 0.90264 0.88539 1.26156 0.96876 0.92897 1.03972 1.70029 1.31200 1.17434 1.34168 0.85148 0.77985 0.79293 0.77276 1.19787 1.20477 1.18445 1.21178 0.91215 0.80289 0.83139 1.90473 1.71580 1.57882 1.32561 1.21212 0.91126 1.03423 0.97784 1.20149 0.90813 1.02490 0.95333 1.19811 0.94738 0.93978 1.01362 1.21209 0.95092 0.97441 1.00401 1.21236 0.93494 0.98759 1.01523 1.20258 0.97602 0.92915 0.98830 1.20804 0.89051 1.03664 1.03002 1.21147 0.92865 0.98792 1.01654 1.19981 0.94417 0.95101 0.99274 1.20889 0.99909 0.94120 1.02603 0.90819 0.92533 0.93023 0.94186 0.92587 0.88782 0.95378 0.91783 0.89505 0.90486 0.91356 0.92453 0.86177 0.84343 0.90541 0.90494 0.90642 0.84108 0.90447 0.89885 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.91 71.98 0.71 -3.82 16 2 C -0.12 -5.20 6.23 30.59 0.19 -5.01 16 3 C 0.11 5.64 4.92 86.38 0.42 6.07 16 4 N -0.45 -23.46 2.55 -635.54 -1.62 -25.08 16 5 C -0.35 -18.10 8.70 84.04 0.73 -17.37 16 6 H 0.10 4.67 6.98 -2.91 -0.02 4.65 16 7 C 0.00 0.20 4.94 84.93 0.42 0.62 16 8 N -0.89 -47.48 11.31 21.66 0.24 -47.24 16 9 Si 0.98 39.17 29.60 68.60 2.03 41.20 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 13 C 0.45 22.85 7.61 87.66 0.67 23.52 16 14 O -0.64 -34.94 15.64 -3.07 -0.05 -34.99 16 15 C -0.10 -3.99 4.15 29.85 0.12 -3.86 16 16 C -0.05 -1.84 3.94 29.85 0.12 -1.73 16 17 C -0.10 -3.13 5.13 -19.87 -0.10 -3.23 16 18 C -0.12 -3.60 9.68 22.27 0.22 -3.39 16 19 C -0.13 -3.22 9.70 22.27 0.22 -3.01 16 20 C -0.10 -2.14 5.88 -19.87 -0.12 -2.26 16 21 C -0.11 -1.62 10.01 71.24 0.71 -0.90 16 22 C -0.13 -2.99 9.36 22.27 0.21 -2.78 16 23 C -0.09 -2.45 5.88 -19.86 -0.12 -2.57 16 24 C -0.12 -2.99 9.22 71.24 0.66 -2.33 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.09 4.96 5.34 -2.39 -0.01 4.95 16 31 H 0.03 1.49 7.56 -2.39 -0.02 1.47 16 32 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 33 H 0.09 3.41 6.38 -2.38 -0.02 3.40 16 34 H 0.08 3.31 8.10 -2.39 -0.02 3.29 16 35 H 0.07 2.56 6.97 -2.39 -0.02 2.54 16 36 H 0.06 2.24 8.01 -2.39 -0.02 2.22 16 37 H 0.12 3.40 8.06 -2.91 -0.02 3.37 16 38 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.07 0.95 8.09 -2.39 -0.02 0.94 16 42 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 45 H 0.06 1.63 5.40 -2.39 -0.01 1.62 16 Total: -1.00 -62.92 364.14 6.62 -56.30 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.95 Total: 31.86 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 5.06 Total: -22.06 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.38 Total: -72.32 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.05 Total: -34.99 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.20 kcal Total: -62.92 6.62 -56.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059934209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.707 kcal (2) G-P(sol) polarization free energy of solvation -62.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds