Wall clock time and date at job start Tue Mar 31 2020 06:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47282 * 2 1 4 4 N 1.46499 * 109.47379 * 180.02562 * 3 2 1 5 5 C 1.37096 * 120.00259 * 264.54245 * 4 3 2 6 6 H 1.08004 * 119.99989 * 146.01079 * 5 4 3 7 7 C 1.38946 * 119.99994 * 326.01403 * 5 4 3 8 8 N 1.31416 * 120.00251 * 337.80811 * 7 5 4 9 9 Si 1.86796 * 120.00234 * 157.80652 * 7 5 4 10 10 H 1.48502 * 109.47346 * 90.00121 * 9 7 5 11 11 H 1.48502 * 109.47218 * 209.99925 * 9 7 5 12 12 H 1.48497 * 109.47266 * 329.99863 * 9 7 5 13 13 C 1.34782 * 120.00057 * 84.53987 * 4 3 2 14 14 O 1.21291 * 119.99507 * 0.02562 * 13 4 3 15 15 C 1.50693 * 119.99941 * 180.02562 * 13 4 3 16 16 C 1.53009 * 109.46969 * 179.97438 * 15 13 4 17 17 C 1.50704 * 109.47114 * 179.97438 * 16 15 13 18 18 C 1.38236 * 119.99393 * 90.00493 * 17 16 15 19 19 C 1.38232 * 119.99580 * 179.97438 * 18 17 16 20 20 C 1.38242 * 119.99986 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99669 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47051 * 89.99965 * 21 20 19 23 23 C 1.38231 * 120.00076 * 0.25295 * 20 19 18 24 24 C 1.38228 * 120.00292 * 270.02265 * 17 16 15 25 25 H 1.09002 * 109.47285 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46835 * 299.99487 * 1 2 3 27 27 H 1.08995 * 109.47520 * 59.99532 * 1 2 3 28 28 H 1.09009 * 109.46835 * 240.00513 * 2 1 3 29 29 H 1.08995 * 109.47520 * 120.00468 * 2 1 3 30 30 H 1.08998 * 109.47147 * 60.00104 * 3 2 1 31 31 H 1.09002 * 109.47553 * 300.00565 * 3 2 1 32 32 H 0.96996 * 120.00595 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47747 * 60.00473 * 15 13 4 34 34 H 1.09000 * 109.47511 * 299.99764 * 15 13 4 35 35 H 1.08999 * 109.46788 * 60.00406 * 16 15 13 36 36 H 1.08995 * 109.47229 * 300.00468 * 16 15 13 37 37 H 1.08001 * 120.00262 * 359.97438 * 18 17 16 38 38 H 1.07994 * 120.00118 * 179.97438 * 19 18 17 39 39 H 1.08995 * 109.47783 * 330.00049 * 21 20 19 40 40 H 1.09000 * 109.47156 * 209.99535 * 21 20 19 41 41 H 1.09003 * 109.47477 * 300.00067 * 22 21 20 42 42 H 1.08995 * 109.47553 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.47312 * 59.99431 * 22 21 20 44 44 H 1.07997 * 120.00173 * 179.72903 * 23 20 19 45 45 H 1.08006 * 120.00091 * 0.02562 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1910 1.5552 1.1810 6 1 5.1327 1.0423 1.3097 7 6 3.6747 2.3293 2.2129 8 7 2.8037 3.2777 1.9505 9 14 4.2188 2.0220 3.9733 10 1 5.4093 2.8563 4.2763 11 1 3.1156 2.3779 4.9016 12 1 4.5638 0.5875 4.1415 13 6 4.1784 1.3316 -1.1629 14 8 3.5714 1.2323 -2.2083 15 6 5.6853 1.3310 -1.1634 16 6 6.1947 1.1935 -2.5996 17 6 7.7018 1.1936 -2.6003 18 6 8.3929 0.0018 -2.4865 19 6 9.7753 0.0018 -2.4876 20 6 10.4664 1.1935 -2.6020 21 6 11.9734 1.1935 -2.6026 22 6 12.4828 1.0560 -4.0388 23 6 9.7752 2.3858 -2.7100 24 6 8.3929 2.3852 -2.7143 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 2.4436 3.8184 2.6708 33 1 6.0486 0.4936 -0.5678 34 1 6.0492 2.2656 -0.7364 35 1 5.8315 2.0307 -3.1957 36 1 5.8308 0.2588 -3.0263 37 1 7.8530 -0.9292 -2.3967 38 1 10.3153 -0.9292 -2.3983 39 1 12.3371 0.3566 -2.0065 40 1 12.3370 2.1284 -2.1762 41 1 12.1192 0.1211 -4.4654 42 1 13.5727 1.0564 -4.0394 43 1 12.1191 1.8930 -4.6350 44 1 10.3151 3.3172 -2.7949 45 1 7.8528 3.3164 -2.8025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541918.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:06 Heat of formation + Delta-G solvation = -42.360709 kcal Electronic energy + Delta-G solvation = -22572.611458 eV Core-core repulsion = 19360.763173 eV Total energy + Delta-G solvation = -3211.848286 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.45912 -38.50561 -35.38492 -34.67682 -32.86150 -32.00301 -31.21526 -30.75330 -28.56380 -26.00723 -24.99199 -23.85715 -22.55498 -22.20719 -20.67698 -20.11341 -18.98074 -16.78540 -16.21305 -15.67100 -15.61015 -14.93161 -14.68619 -14.32676 -14.25525 -13.86985 -13.68354 -13.63868 -13.22478 -12.95149 -12.87942 -12.75491 -12.09379 -11.99883 -11.68882 -11.54251 -11.36209 -11.30636 -11.22212 -11.03592 -10.94041 -10.78949 -10.66184 -10.57637 -10.34748 -10.33364 -10.15334 -9.71150 -9.07272 -8.74551 -8.48757 -8.18013 -7.50525 -6.38149 -4.03731 1.51251 1.58013 3.10121 3.20607 3.24645 3.89877 3.95156 4.11845 4.71846 4.81267 4.82814 4.99425 5.13608 5.15562 5.24429 5.30993 5.45077 5.56518 5.64617 5.76410 5.79857 5.81387 5.86192 5.90447 5.92605 6.00749 6.04472 6.16789 6.23138 6.34945 6.43115 6.53893 6.55603 6.59319 6.67694 6.72736 6.73070 6.80113 6.85403 6.98175 7.15447 7.20657 7.38089 7.51338 7.94787 8.38945 9.08521 9.55662 9.98995 10.63248 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.003664 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.093361 B = 7640.977755 C = 8664.579652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.114 3.886 4 N -0.439 5.439 5 C -0.339 4.339 6 H 0.090 0.910 7 C 0.043 3.957 8 N -0.858 5.858 9 Si 0.910 3.090 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.466 3.534 14 O -0.609 6.609 15 C -0.110 4.110 16 C -0.065 4.065 17 C -0.072 4.072 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.098 4.098 21 C -0.083 4.083 22 C -0.146 4.146 23 C -0.117 4.117 24 C -0.114 4.114 25 H 0.044 0.956 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.269 0.731 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.875 -3.801 -5.211 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.156 5.156 5 C -0.467 4.467 6 H 0.107 0.893 7 C -0.163 4.163 8 N -0.494 5.494 9 Si 0.737 3.263 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.255 3.745 14 O -0.496 6.496 15 C -0.150 4.150 16 C -0.103 4.103 17 C -0.072 4.072 18 C -0.133 4.133 19 C -0.136 4.136 20 C -0.098 4.098 21 C -0.120 4.120 22 C -0.203 4.203 23 C -0.135 4.135 24 C -0.132 4.132 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.443 -3.689 -5.584 13.256 hybrid contribution 0.222 -0.042 1.145 1.167 sum 11.665 -3.731 -4.440 13.027 Atomic orbital electron populations 1.21654 0.96647 1.00375 1.01367 1.21832 0.94666 0.99577 1.01213 1.21433 0.81605 0.94411 1.03481 1.43507 1.04757 1.62329 1.05046 1.19424 1.07368 1.29274 0.90607 0.89255 1.25307 0.97015 0.93572 1.00363 1.69947 1.30134 1.16220 1.33115 0.86206 0.78441 0.79143 0.82551 1.20234 1.20702 1.19337 1.20429 0.89468 0.80955 0.83609 1.90509 1.70548 1.56713 1.31872 1.21306 0.94250 1.03619 0.95836 1.20384 0.88837 1.03614 0.97461 1.20104 0.96361 0.93014 0.97678 1.21066 0.93948 0.97900 1.00419 1.20947 0.94141 0.97261 1.01232 1.19803 0.95306 0.93411 1.01234 1.20500 0.91465 1.02496 0.97532 1.21747 1.00307 1.02146 0.96118 1.20962 0.94159 0.97283 1.01099 1.21094 0.93957 0.97919 1.00189 0.93681 0.93033 0.93147 0.92907 0.92483 0.87611 0.93157 0.92054 0.90531 0.89646 0.90741 0.90892 0.86153 0.86571 0.91311 0.91286 0.92624 0.92689 0.92609 0.86520 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.91 37.15 0.37 -2.09 16 2 C -0.13 -2.81 6.22 -26.74 -0.17 -2.98 16 3 C 0.11 2.78 4.90 -4.04 -0.02 2.76 16 4 N -0.44 -11.15 2.56 -114.82 -0.29 -11.44 16 5 C -0.34 -8.59 8.70 -14.94 -0.13 -8.72 16 6 H 0.09 2.17 6.97 -52.48 -0.37 1.80 16 7 C 0.04 1.09 4.92 -17.47 -0.09 1.00 16 8 N -0.86 -22.58 11.34 55.50 0.63 -21.95 16 9 Si 0.91 19.35 29.61 -169.99 -5.03 14.32 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 13 C 0.47 11.41 7.60 -10.99 -0.08 11.33 16 14 O -0.61 -16.10 15.65 5.55 0.09 -16.01 16 15 C -0.11 -2.22 4.34 -27.88 -0.12 -2.34 16 16 C -0.07 -1.15 4.63 -27.88 -0.13 -1.28 16 17 C -0.07 -1.10 5.13 -104.62 -0.54 -1.64 16 18 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 19 C -0.12 -1.47 9.70 -39.58 -0.38 -1.86 16 20 C -0.10 -1.17 5.13 -104.62 -0.54 -1.71 16 21 C -0.08 -0.77 6.07 -27.88 -0.17 -0.94 16 22 C -0.15 -1.20 9.89 37.16 0.37 -0.84 16 23 C -0.12 -1.49 9.70 -39.59 -0.38 -1.87 16 24 C -0.11 -1.63 9.70 -39.59 -0.38 -2.01 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.11 2.71 5.35 -51.93 -0.28 2.43 16 31 H 0.05 1.28 7.59 -51.93 -0.39 0.88 16 32 H 0.27 6.67 8.31 -40.82 -0.34 6.34 16 33 H 0.08 1.48 7.64 -51.93 -0.40 1.08 16 34 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 35 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 36 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 37 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -28.76 370.32 -9.55 -38.31 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.74 Total: 6.39 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.78 Total: -15.19 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.34 Total: -33.40 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: 0.09 Total: -16.01 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.76 -9.55 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541918.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.052 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds