Wall clock time and date at job start Tue Mar 31 2020 06:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47257 * 2 1 4 4 N 1.46897 * 109.47425 * 239.99987 * 2 1 3 5 5 C 1.46909 * 110.99947 * 85.00062 * 4 2 1 6 6 H 1.08994 * 110.01493 * 33.61162 * 5 4 2 7 7 C 1.54266 * 110.02807 * 272.16818 * 5 4 2 8 8 C 1.54889 * 104.19371 * 217.10046 * 7 5 4 9 9 C 1.54895 * 102.74595 * 37.94616 * 8 7 5 10 10 C 1.53873 * 110.03043 * 155.00098 * 5 4 2 11 11 H 1.08997 * 110.03531 * 0.02562 * 10 5 4 12 12 C 1.52995 * 110.03294 * 238.56755 * 10 5 4 13 13 C 1.50702 * 109.46943 * 120.00172 * 2 1 3 14 14 C 1.38311 * 119.92915 * 259.99775 * 13 2 1 15 15 C 1.38096 * 120.06782 * 180.02562 * 14 13 2 16 16 C 1.38883 * 119.93001 * 359.97438 * 15 14 13 17 17 O 1.35752 * 120.06733 * 179.72546 * 16 15 14 18 18 C 1.34835 * 116.99867 * 174.45565 * 17 16 15 19 19 H 1.08001 * 119.99908 * 5.03572 * 18 17 16 20 20 C 1.38654 * 119.99862 * 185.04415 * 18 17 16 21 21 N 1.31554 * 119.99970 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46970 * 90.00112 * 22 20 18 24 24 H 1.48501 * 109.47408 * 209.99838 * 22 20 18 25 25 H 1.48495 * 109.47507 * 330.00260 * 22 20 18 26 26 C 1.38878 * 119.86281 * 0.02562 * 16 15 14 27 27 C 1.38101 * 119.93252 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.46802 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47135 * 299.99914 * 1 2 3 30 30 H 1.08995 * 109.47019 * 59.99948 * 1 2 3 31 31 H 1.00902 * 111.00414 * 208.95608 * 4 2 1 32 32 H 1.08995 * 110.49069 * 335.78604 * 7 5 4 33 33 H 1.08999 * 110.48519 * 98.43087 * 7 5 4 34 34 H 1.08996 * 110.76200 * 279.63542 * 8 7 5 35 35 H 1.08998 * 110.75801 * 156.25734 * 8 7 5 36 36 H 1.09002 * 110.48863 * 203.37582 * 9 8 7 37 37 H 1.09005 * 110.48470 * 80.73635 * 9 8 7 38 38 H 1.09003 * 109.46915 * 60.00037 * 12 10 5 39 39 H 1.08997 * 109.47416 * 180.02562 * 12 10 5 40 40 H 1.09005 * 109.47594 * 300.00562 * 12 10 5 41 41 H 1.08001 * 119.96634 * 0.02562 * 14 13 2 42 42 H 1.07991 * 120.03444 * 180.02562 * 15 14 13 43 43 H 0.97002 * 120.00599 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.03391 * 179.97438 * 26 16 15 45 45 H 1.07994 * 119.96443 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2227 -2.3469 6 1 2.3404 1.2266 -2.0097 7 6 0.7262 0.2428 -3.0815 8 6 1.1068 0.3544 -4.5788 9 6 2.3661 -0.5419 -4.6789 10 6 3.1253 -0.2763 -3.3625 11 1 3.5843 -1.1977 -3.0042 12 6 4.1967 0.7935 -3.5821 13 6 2.0323 -0.7105 1.2305 14 6 2.4586 0.0212 2.3241 15 6 2.9199 -0.6269 3.4529 16 6 2.9550 -2.0148 3.4894 17 8 3.4132 -2.6547 4.5956 18 6 3.3135 -3.9992 4.6103 19 1 2.9600 -4.5241 3.7351 20 6 3.6647 -4.7080 5.7490 21 7 4.0957 -4.0687 6.8149 22 14 3.5260 -6.5707 5.7697 23 1 4.8041 -7.1674 5.3054 24 1 3.2385 -7.0304 7.1521 25 1 2.4252 -6.9952 4.8679 26 6 2.5263 -2.7466 2.3897 27 6 2.0670 -2.0926 1.2634 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.9174 -1.1205 -1.0287 32 1 0.1776 -0.6804 -2.8951 33 1 0.1376 1.1065 -2.7722 34 1 1.3446 1.3852 -4.8412 35 1 0.3068 -0.0315 -5.2105 36 1 2.9744 -0.2509 -5.5354 37 1 2.0824 -1.5919 -4.7506 38 1 4.6931 1.0101 -2.6361 39 1 4.9298 0.4310 -4.3027 40 1 3.7306 1.7018 -3.9641 41 1 2.4306 1.1005 2.2952 42 1 3.2522 -0.0551 4.3066 43 1 4.3411 -4.5644 7.6118 44 1 2.5528 -3.8260 2.4150 45 1 1.7331 -2.6612 0.4081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071206432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:53 Heat of formation + Delta-G solvation = -22.347600 kcal Electronic energy + Delta-G solvation = -22748.015459 eV Core-core repulsion = 19537.035007 eV Total energy + Delta-G solvation = -3210.980452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.51679 -38.80703 -37.00572 -34.70402 -32.25368 -31.27431 -30.39306 -30.13913 -27.92811 -27.07961 -25.35136 -24.75121 -22.44886 -21.76103 -20.65201 -19.95343 -19.50500 -17.96660 -17.00943 -15.98410 -15.72870 -15.28297 -14.68000 -14.52711 -14.30878 -13.97272 -13.61362 -13.46641 -13.37159 -13.00875 -12.79482 -12.66810 -12.64003 -12.23073 -11.99613 -11.74764 -11.63995 -11.52411 -11.19811 -11.07253 -10.89283 -10.78986 -10.77287 -10.63707 -10.59079 -10.58109 -10.42195 -10.15061 -9.31505 -8.81797 -8.32014 -8.15468 -7.16276 -6.44456 -4.03240 2.23417 2.32730 3.13209 3.14412 3.19205 3.97468 4.21772 4.39183 4.49095 4.57777 4.79111 5.09225 5.14071 5.16899 5.23371 5.27911 5.30248 5.40159 5.45947 5.49980 5.58904 5.66388 5.72969 5.76674 5.80757 5.81646 5.85505 5.87897 5.98986 6.00241 6.04016 6.15288 6.19956 6.25866 6.28595 6.42541 6.51906 6.72114 6.93701 7.03138 7.18394 7.24917 7.45550 7.50646 7.59339 7.84607 8.00905 9.01403 9.71785 10.73681 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.003071 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.396062 B = 9115.452826 C = 9430.465943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.143 3.857 3 H 0.039 0.961 4 N -0.678 5.678 5 C 0.087 3.913 6 H 0.045 0.955 7 C -0.113 4.113 8 C -0.126 4.126 9 C -0.116 4.116 10 C -0.100 4.100 11 H 0.077 0.923 12 C -0.145 4.145 13 C -0.192 4.192 14 C -0.069 4.069 15 C -0.194 4.194 16 C 0.155 3.845 17 O -0.179 6.179 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C -0.236 4.236 27 C -0.053 4.053 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.345 0.655 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 8.142 -19.587 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.034 3.966 3 H 0.057 0.943 4 N -0.310 5.310 5 C -0.023 4.023 6 H 0.063 0.937 7 C -0.151 4.151 8 C -0.163 4.163 9 C -0.153 4.153 10 C -0.119 4.119 11 H 0.095 0.905 12 C -0.202 4.202 13 C -0.193 4.193 14 C -0.088 4.088 15 C -0.213 4.213 16 C 0.101 3.899 17 O -0.082 6.082 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.255 4.255 27 C -0.071 4.071 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.165 0.835 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.144 0.856 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.608 7.909 -19.284 21.346 hybrid contribution 0.724 -0.421 0.346 0.906 sum -3.883 7.488 -18.938 20.732 Atomic orbital electron populations 1.21854 0.94711 1.02220 1.00477 1.20201 0.95155 0.94240 0.87001 0.94301 1.60765 1.33536 1.32581 1.04142 1.22311 0.94786 0.94260 0.90968 0.93692 1.22503 0.96749 1.02109 0.93730 1.22494 0.97508 0.99487 0.96852 1.22357 0.96398 0.99966 0.96604 1.21939 0.95511 0.98926 0.95558 0.90456 1.21888 0.98188 0.98606 1.01545 1.19302 1.10022 0.93811 0.96181 1.20473 0.97674 0.98068 0.92567 1.20161 1.09661 0.91854 0.99646 1.19411 0.91107 0.91883 0.87503 1.83976 1.69072 1.21692 1.33489 1.21333 1.46169 0.78495 1.00759 0.89053 1.25286 0.96448 1.00519 0.94272 1.70037 1.40586 1.36276 1.02971 0.85717 0.78981 0.80678 0.78101 1.19886 1.20265 1.19159 1.21194 1.09141 1.00545 0.94619 1.20598 0.96447 0.93365 0.96695 0.92142 0.92941 0.93134 0.83547 0.90279 0.92325 0.91972 0.91801 0.91974 0.91494 0.92761 0.92666 0.92734 0.87433 0.86662 0.92040 0.85648 0.86726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 9.19 37.16 0.34 -1.39 16 2 C 0.14 1.95 2.82 -68.87 -0.19 1.76 16 3 H 0.04 0.52 7.29 -51.93 -0.38 0.15 16 4 N -0.68 -8.38 5.49 -99.78 -0.55 -8.93 16 5 C 0.09 0.91 2.90 -66.59 -0.19 0.72 16 6 H 0.05 0.50 6.96 -51.93 -0.36 0.14 16 7 C -0.11 -1.09 4.97 -25.07 -0.12 -1.22 16 8 C -0.13 -1.03 6.91 -24.74 -0.17 -1.20 16 9 C -0.12 -0.97 6.37 -25.07 -0.16 -1.13 16 10 C -0.10 -0.94 3.18 -89.51 -0.28 -1.22 16 11 H 0.08 0.78 7.47 -51.93 -0.39 0.40 16 12 C -0.14 -1.23 8.83 37.15 0.33 -0.90 16 13 C -0.19 -3.23 4.72 -104.57 -0.49 -3.72 16 14 C -0.07 -1.23 9.66 -39.61 -0.38 -1.62 16 15 C -0.19 -4.12 9.99 -39.39 -0.39 -4.51 16 16 C 0.15 3.75 6.65 -39.11 -0.26 3.49 16 17 O -0.18 -5.14 9.76 0.03 0.00 -5.14 16 18 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 19 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 22 Si 0.94 20.62 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 26 C -0.24 -5.13 9.17 -39.39 -0.36 -5.49 16 27 C -0.05 -0.96 9.00 -39.61 -0.36 -1.32 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.57 5.93 -51.93 -0.31 0.26 16 31 H 0.34 4.48 7.26 -39.29 -0.29 4.20 16 32 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 33 H 0.06 0.55 7.37 -51.93 -0.38 0.17 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.47 7.84 -51.93 -0.41 0.06 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.11 1.63 8.03 -52.49 -0.42 1.21 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 45 H 0.11 1.90 7.71 -52.49 -0.40 1.50 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -29.30 355.39 -9.23 -38.53 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -7.26 Total: 6.78 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -2.51 Total: -27.48 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.21 Total: -33.64 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: 0.00 Total: -5.14 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.30 -9.23 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071206432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.184 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds