Wall clock time and date at job start Tue Mar 31 2020 06:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47257 * 2 1 4 4 N 1.46897 * 109.47425 * 239.99987 * 2 1 3 5 5 C 1.46909 * 110.99947 * 85.00062 * 4 2 1 6 6 H 1.08994 * 110.01493 * 33.61162 * 5 4 2 7 7 C 1.54266 * 110.02807 * 272.16818 * 5 4 2 8 8 C 1.54889 * 104.19371 * 217.10046 * 7 5 4 9 9 C 1.54895 * 102.74595 * 37.94616 * 8 7 5 10 10 C 1.53873 * 110.03043 * 155.00098 * 5 4 2 11 11 H 1.08997 * 110.03531 * 0.02562 * 10 5 4 12 12 C 1.52995 * 110.03294 * 238.56755 * 10 5 4 13 13 C 1.50702 * 109.46943 * 120.00172 * 2 1 3 14 14 C 1.38311 * 119.92915 * 259.99775 * 13 2 1 15 15 C 1.38096 * 120.06782 * 180.02562 * 14 13 2 16 16 C 1.38883 * 119.93001 * 359.97438 * 15 14 13 17 17 O 1.35752 * 120.06733 * 179.72546 * 16 15 14 18 18 C 1.34835 * 116.99867 * 174.45565 * 17 16 15 19 19 H 1.08001 * 119.99908 * 5.03572 * 18 17 16 20 20 C 1.38654 * 119.99862 * 185.04415 * 18 17 16 21 21 N 1.31554 * 119.99970 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99933 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46970 * 90.00112 * 22 20 18 24 24 H 1.48501 * 109.47408 * 209.99838 * 22 20 18 25 25 H 1.48495 * 109.47507 * 330.00260 * 22 20 18 26 26 C 1.38878 * 119.86281 * 0.02562 * 16 15 14 27 27 C 1.38101 * 119.93252 * 0.02562 * 26 16 15 28 28 H 1.08995 * 109.46802 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47135 * 299.99914 * 1 2 3 30 30 H 1.08995 * 109.47019 * 59.99948 * 1 2 3 31 31 H 1.00902 * 111.00414 * 208.95608 * 4 2 1 32 32 H 1.08995 * 110.49069 * 335.78604 * 7 5 4 33 33 H 1.08999 * 110.48519 * 98.43087 * 7 5 4 34 34 H 1.08996 * 110.76200 * 279.63542 * 8 7 5 35 35 H 1.08998 * 110.75801 * 156.25734 * 8 7 5 36 36 H 1.09002 * 110.48863 * 203.37582 * 9 8 7 37 37 H 1.09005 * 110.48470 * 80.73635 * 9 8 7 38 38 H 1.09003 * 109.46915 * 60.00037 * 12 10 5 39 39 H 1.08997 * 109.47416 * 180.02562 * 12 10 5 40 40 H 1.09005 * 109.47594 * 300.00562 * 12 10 5 41 41 H 1.08001 * 119.96634 * 0.02562 * 14 13 2 42 42 H 1.07991 * 120.03444 * 180.02562 * 15 14 13 43 43 H 0.97002 * 120.00599 * 179.97438 * 21 20 18 44 44 H 1.08007 * 120.03391 * 179.97438 * 26 16 15 45 45 H 1.07994 * 119.96443 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2227 -2.3469 6 1 2.3404 1.2266 -2.0097 7 6 0.7262 0.2428 -3.0815 8 6 1.1068 0.3544 -4.5788 9 6 2.3661 -0.5419 -4.6789 10 6 3.1253 -0.2763 -3.3625 11 1 3.5843 -1.1977 -3.0042 12 6 4.1967 0.7935 -3.5821 13 6 2.0323 -0.7105 1.2305 14 6 2.4586 0.0212 2.3241 15 6 2.9199 -0.6269 3.4529 16 6 2.9550 -2.0148 3.4894 17 8 3.4132 -2.6547 4.5956 18 6 3.3135 -3.9992 4.6103 19 1 2.9600 -4.5241 3.7351 20 6 3.6647 -4.7080 5.7490 21 7 4.0957 -4.0687 6.8149 22 14 3.5260 -6.5707 5.7697 23 1 4.8041 -7.1674 5.3054 24 1 3.2385 -7.0304 7.1521 25 1 2.4252 -6.9952 4.8679 26 6 2.5263 -2.7466 2.3897 27 6 2.0670 -2.0926 1.2634 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 2.9174 -1.1205 -1.0287 32 1 0.1776 -0.6804 -2.8951 33 1 0.1376 1.1065 -2.7722 34 1 1.3446 1.3852 -4.8412 35 1 0.3068 -0.0315 -5.2105 36 1 2.9744 -0.2509 -5.5354 37 1 2.0824 -1.5919 -4.7506 38 1 4.6931 1.0101 -2.6361 39 1 4.9298 0.4310 -4.3027 40 1 3.7306 1.7018 -3.9641 41 1 2.4306 1.1005 2.2952 42 1 3.2522 -0.0551 4.3066 43 1 4.3411 -4.5644 7.6118 44 1 2.5528 -3.8260 2.4150 45 1 1.7331 -2.6612 0.4081 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071206432.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:53 Heat of formation + Delta-G solvation = -38.438806 kcal Electronic energy + Delta-G solvation = -22748.713226 eV Core-core repulsion = 19537.035007 eV Total energy + Delta-G solvation = -3211.678219 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.93936 -39.99101 -38.54830 -35.96419 -34.23709 -31.99692 -31.78298 -31.53034 -29.32238 -27.96837 -27.24660 -25.56991 -23.92322 -23.35285 -21.46150 -21.10698 -20.47187 -19.82129 -18.83409 -16.94743 -16.89312 -16.30728 -16.25273 -15.95478 -15.59510 -15.53141 -15.17324 -14.83722 -14.48427 -14.26389 -14.13155 -13.74380 -13.53535 -13.51531 -13.32020 -13.00265 -12.92595 -12.80337 -12.52585 -12.37504 -12.18788 -12.12654 -11.78255 -11.64984 -11.62294 -11.46255 -11.34904 -11.22913 -11.16015 -10.78543 -9.77641 -9.30401 -8.91110 -8.47602 -6.15695 0.59760 0.68749 1.34744 1.43858 1.52318 2.17611 2.81203 3.14331 3.27578 3.51577 3.64831 3.77346 3.94785 4.06131 4.13989 4.20863 4.43913 4.49455 4.52067 4.55986 4.58770 4.61332 4.67143 4.75523 4.78219 4.82183 4.94593 4.98627 5.04157 5.11698 5.13554 5.15157 5.16870 5.23743 5.29396 5.31879 5.37663 5.44005 5.47721 5.57505 5.58579 5.72280 5.77235 6.02820 6.21209 6.33818 6.52470 6.97324 7.78259 8.75762 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025210 B = 0.003071 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.396062 B = 9115.452826 C = 9430.465943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.147 3.853 3 H 0.052 0.948 4 N -0.680 5.680 5 C 0.086 3.914 6 H 0.045 0.955 7 C -0.112 4.112 8 C -0.121 4.121 9 C -0.114 4.114 10 C -0.100 4.100 11 H 0.067 0.933 12 C -0.142 4.142 13 C -0.164 4.164 14 C -0.062 4.062 15 C -0.204 4.204 16 C 0.114 3.886 17 O -0.233 6.233 18 C -0.413 4.413 19 H 0.101 0.899 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.271 1.271 25 H -0.253 1.253 26 C -0.243 4.243 27 C -0.047 4.047 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.341 0.659 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.273 0.727 44 H 0.116 0.884 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 8.942 -22.778 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 H 0.070 0.930 4 N -0.312 5.312 5 C -0.023 4.023 6 H 0.063 0.937 7 C -0.150 4.150 8 C -0.159 4.159 9 C -0.152 4.152 10 C -0.119 4.119 11 H 0.085 0.915 12 C -0.199 4.199 13 C -0.165 4.165 14 C -0.081 4.081 15 C -0.223 4.223 16 C 0.064 3.936 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.118 0.882 20 C -0.220 4.220 21 N -0.560 5.560 22 Si 0.837 3.163 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.262 4.262 27 C -0.066 4.066 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.163 0.837 42 H 0.130 0.870 43 H 0.082 0.918 44 H 0.134 0.866 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.760 8.746 -22.535 24.849 hybrid contribution 0.989 -0.409 1.055 1.503 sum -4.771 8.336 -21.480 23.529 Atomic orbital electron populations 1.21826 0.93674 1.01917 1.01552 1.20223 0.95822 0.94380 0.85785 0.92990 1.60798 1.33351 1.33023 1.04059 1.22388 0.95773 0.93732 0.90438 0.93697 1.22474 0.96070 1.01725 0.94702 1.22481 0.97529 0.99974 0.95890 1.22349 0.96586 0.99822 0.96411 1.21930 0.95524 0.98714 0.95761 0.91472 1.21861 0.98059 0.98621 1.01396 1.19783 1.06358 0.93369 0.96980 1.20871 0.95938 0.99987 0.91271 1.20416 1.09992 0.90915 1.01019 1.19940 0.92925 0.93213 0.87538 1.83940 1.72084 1.22077 1.35880 1.21817 1.46588 0.78989 1.01552 0.88191 1.26583 0.95773 1.06156 0.93504 1.70182 1.43172 1.38623 1.04011 0.84595 0.79638 0.73496 0.78547 1.18737 1.19548 1.17705 1.21270 1.09497 1.00277 0.95180 1.20811 0.95463 0.94272 0.96018 0.93149 0.92836 0.91203 0.84003 0.91419 0.91796 0.91107 0.91028 0.90897 0.91991 0.93541 0.91947 0.92006 0.83707 0.86967 0.91835 0.86583 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.19 71.98 0.66 -2.27 16 2 C 0.15 3.50 2.82 44.17 0.12 3.62 16 3 H 0.05 1.16 7.29 -2.39 -0.02 1.15 16 4 N -0.68 -14.85 5.49 -469.60 -2.58 -17.43 16 5 C 0.09 1.55 2.90 45.64 0.13 1.68 16 6 H 0.05 0.83 6.96 -2.39 -0.02 0.82 16 7 C -0.11 -1.80 4.97 31.67 0.16 -1.65 16 8 C -0.12 -1.59 6.91 31.89 0.22 -1.37 16 9 C -0.11 -1.60 6.37 31.67 0.20 -1.40 16 10 C -0.10 -1.63 3.18 -10.07 -0.03 -1.66 16 11 H 0.07 1.23 7.47 -2.39 -0.02 1.22 16 12 C -0.14 -2.05 8.83 71.98 0.64 -1.41 16 13 C -0.16 -5.11 4.72 -19.83 -0.09 -5.20 16 14 C -0.06 -2.09 9.66 22.25 0.21 -1.88 16 15 C -0.20 -8.78 9.99 22.39 0.22 -8.55 16 16 C 0.11 5.76 6.65 22.58 0.15 5.91 16 17 O -0.23 -14.24 9.76 -22.81 -0.22 -14.46 16 18 C -0.41 -24.42 9.49 67.92 0.64 -23.77 16 19 H 0.10 5.44 5.21 -2.91 -0.02 5.43 16 20 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 21 N -0.92 -57.18 13.67 21.61 0.30 -56.88 16 22 Si 1.02 43.34 29.55 68.60 2.03 45.37 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 26 C -0.24 -10.76 9.17 22.39 0.21 -10.55 16 27 C -0.05 -1.67 9.00 22.25 0.20 -1.46 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.31 5.93 -2.39 -0.01 1.30 16 31 H 0.34 8.01 7.26 -89.69 -0.65 7.36 16 32 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 33 H 0.06 0.97 7.37 -2.39 -0.02 0.95 16 34 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.88 7.84 -2.39 -0.02 0.86 16 37 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.15 3.82 8.03 -2.91 -0.02 3.80 16 42 H 0.11 4.79 8.06 -2.92 -0.02 4.76 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 45 H 0.14 4.23 7.71 -2.91 -0.02 4.20 16 Total: -1.00 -67.49 355.39 3.95 -63.54 By element: Atomic # 1 Polarization: 30.36 SS G_CDS: 0.32 Total: 30.68 kcal Atomic # 6 Polarization: -54.93 SS G_CDS: 4.11 Total: -50.81 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -2.28 Total: -74.31 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.22 Total: -14.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -67.49 3.95 -63.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071206432.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.099 kcal (2) G-P(sol) polarization free energy of solvation -67.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds