Wall clock time and date at job start Tue Mar 31 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47127 * 2 1 4 4 N 1.46903 * 109.47291 * 240.00249 * 2 1 3 5 5 C 1.46897 * 110.99783 * 84.99670 * 4 2 1 6 6 H 1.08994 * 110.02156 * 34.30072 * 5 4 2 7 7 C 1.54268 * 110.03286 * 272.90722 * 5 4 2 8 8 C 1.54888 * 104.19687 * 217.11073 * 7 5 4 9 9 C 1.54888 * 102.75111 * 37.94209 * 8 7 5 10 10 C 1.53881 * 110.03035 * 155.69269 * 5 4 2 11 11 H 1.08994 * 110.03100 * 238.56484 * 10 5 4 12 12 C 1.52997 * 110.03261 * 359.97438 * 10 5 4 13 13 C 1.50694 * 109.47392 * 119.99836 * 2 1 3 14 14 C 1.38301 * 119.93262 * 260.00062 * 13 2 1 15 15 C 1.38100 * 120.06954 * 180.02562 * 14 13 2 16 16 C 1.38880 * 119.93180 * 0.02562 * 15 14 13 17 17 O 1.35753 * 120.06801 * 179.97438 * 16 15 14 18 18 C 1.34821 * 117.00047 * 5.52931 * 17 16 15 19 19 H 1.07994 * 120.00555 * 354.94530 * 18 17 16 20 20 C 1.38658 * 119.99851 * 174.94789 * 18 17 16 21 21 N 1.31558 * 119.99765 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99990 * 359.97438 * 20 18 17 23 23 H 1.48511 * 109.47027 * 90.00420 * 22 20 18 24 24 H 1.48498 * 109.47442 * 330.00675 * 22 20 18 25 25 H 1.48500 * 109.47423 * 210.00317 * 22 20 18 26 26 C 1.38883 * 119.86060 * 0.24761 * 16 15 14 27 27 C 1.38096 * 119.92664 * 359.50043 * 26 16 15 28 28 H 1.08994 * 109.47474 * 60.00244 * 1 2 3 29 29 H 1.09004 * 109.46418 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47029 * 299.99371 * 1 2 3 31 31 H 1.00902 * 110.99530 * 321.04275 * 4 2 1 32 32 H 1.09002 * 110.48571 * 335.78267 * 7 5 4 33 33 H 1.08993 * 110.48759 * 98.42913 * 7 5 4 34 34 H 1.08996 * 110.75906 * 156.25487 * 8 7 5 35 35 H 1.09002 * 110.75479 * 279.44062 * 8 7 5 36 36 H 1.08993 * 110.48715 * 80.73597 * 9 8 7 37 37 H 1.09005 * 110.48604 * 203.25067 * 9 8 7 38 38 H 1.09004 * 109.46650 * 60.00066 * 12 10 5 39 39 H 1.08994 * 109.47072 * 179.97438 * 12 10 5 40 40 H 1.08995 * 109.47365 * 300.00353 * 12 10 5 41 41 H 1.08002 * 119.96460 * 0.02562 * 14 13 2 42 42 H 1.08005 * 120.03545 * 179.97438 * 15 14 13 43 43 H 0.97005 * 119.99347 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.03116 * 179.72180 * 26 16 15 45 45 H 1.08003 * 119.96436 * 180.22542 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3468 6 1 2.3522 1.2240 -2.0112 7 6 0.7205 0.2569 -3.0705 8 6 1.0901 0.3654 -4.5708 9 6 2.3394 -0.5434 -4.6816 10 6 3.1127 -0.2855 -3.3706 11 1 3.8819 0.4696 -3.5325 12 6 3.7497 -1.5844 -2.8727 13 6 2.0324 -0.7103 1.2304 14 6 2.4587 0.0213 2.3239 15 6 2.9201 -0.6268 3.4528 16 6 2.9563 -2.0146 3.4890 17 8 3.4099 -2.6545 4.5970 18 6 3.7021 -1.8903 5.6686 19 1 3.6503 -0.8141 5.5948 20 6 4.0695 -2.4861 6.8655 21 7 4.3542 -1.7404 7.9113 22 14 4.1586 -4.3476 6.9935 23 1 5.5255 -4.8036 6.6339 24 1 3.1734 -4.9555 6.0635 25 1 3.8481 -4.7636 8.3848 26 6 2.5329 -2.7464 2.3871 27 6 2.0677 -2.0925 1.2633 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.4496 -1.4979 -1.4100 32 1 0.1642 -0.6609 -2.8802 33 1 0.1431 1.1263 -2.7561 34 1 0.2812 -0.0121 -5.1962 35 1 1.3328 1.3946 -4.8353 36 1 2.0446 -1.5903 -4.7514 37 1 2.9424 -0.2595 -5.5442 38 1 2.9757 -2.3401 -2.7379 39 1 4.4769 -1.9362 -3.6043 40 1 4.2496 -1.4026 -1.9214 41 1 2.4306 1.1005 2.2950 42 1 3.2532 -0.0549 4.3063 43 1 4.6115 -2.1573 8.7486 44 1 2.5641 -3.8257 2.4106 45 1 1.7348 -2.6610 0.4074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071206433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:56 Heat of formation + Delta-G solvation = -14.958393 kcal Electronic energy + Delta-G solvation = -22908.236383 eV Core-core repulsion = 19697.576350 eV Total energy + Delta-G solvation = -3210.660032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.66852 -38.92886 -37.08390 -34.81459 -32.33706 -31.40055 -30.47730 -30.09501 -28.01059 -26.73164 -25.26266 -24.85182 -22.54090 -21.99628 -20.99432 -20.00267 -19.23321 -17.78037 -17.30332 -16.47126 -15.75010 -14.89578 -14.77524 -14.31632 -14.02203 -13.85574 -13.74480 -13.61755 -13.50505 -13.20433 -12.90362 -12.76887 -12.53106 -12.26191 -12.22223 -12.08450 -11.71015 -11.38153 -11.18593 -11.09545 -11.01441 -10.92401 -10.73927 -10.70236 -10.52627 -10.51626 -10.28667 -10.08794 -9.33726 -8.82538 -8.30132 -8.16928 -7.22540 -6.38063 -4.04401 2.20439 2.29618 3.25007 3.27674 3.42645 4.13940 4.26791 4.39381 4.46276 4.55026 4.77095 4.90616 5.09159 5.13978 5.16142 5.20415 5.27640 5.36559 5.41125 5.41759 5.47626 5.54549 5.62787 5.65466 5.72436 5.77838 5.82217 5.88388 5.94153 5.96570 6.02521 6.15325 6.17018 6.20656 6.30792 6.41712 6.53783 6.63543 6.83596 7.03413 7.19550 7.34940 7.43076 7.44772 7.67508 7.84804 8.08595 8.97690 9.61539 10.69863 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.003090 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.838958 B = 9058.728670 C = 9393.836224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.138 3.862 3 H 0.075 0.925 4 N -0.668 5.668 5 C 0.087 3.913 6 H 0.077 0.923 7 C -0.152 4.152 8 C -0.124 4.124 9 C -0.122 4.122 10 C -0.088 4.088 11 H 0.068 0.932 12 C -0.124 4.124 13 C -0.156 4.156 14 C -0.071 4.071 15 C -0.220 4.220 16 C 0.158 3.842 17 O -0.220 6.220 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.260 1.260 25 H -0.283 1.283 26 C -0.194 4.194 27 C -0.056 4.056 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.339 0.661 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.279 0.721 44 H 0.114 0.886 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 3.411 -22.512 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.029 3.971 3 H 0.093 0.907 4 N -0.297 5.297 5 C -0.023 4.023 6 H 0.095 0.905 7 C -0.191 4.191 8 C -0.162 4.162 9 C -0.160 4.160 10 C -0.107 4.107 11 H 0.086 0.914 12 C -0.181 4.181 13 C -0.157 4.157 14 C -0.089 4.089 15 C -0.239 4.239 16 C 0.106 3.894 17 O -0.126 6.126 18 C -0.464 4.464 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.184 1.184 25 H -0.209 1.209 26 C -0.213 4.213 27 C -0.074 4.074 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.124 0.876 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.848 3.249 -22.037 23.030 hybrid contribution -0.873 -0.438 0.114 0.984 sum -6.722 2.811 -21.923 23.102 Atomic orbital electron populations 1.22609 0.97303 1.02073 1.01775 1.20277 0.91854 0.96659 0.88306 0.90697 1.60794 1.57198 1.08884 1.02833 1.22289 0.93333 0.96158 0.90546 0.90495 1.23223 0.98285 1.01649 0.95987 1.22432 0.97758 0.99846 0.96182 1.22500 0.96315 0.99694 0.97468 1.21784 0.96804 0.98622 0.93467 0.91351 1.21535 0.99766 0.95850 1.00959 1.19159 1.07977 0.93525 0.95051 1.20595 0.97317 0.98317 0.92698 1.21222 1.08294 0.94324 1.00071 1.19125 0.91813 0.90941 0.87496 1.83568 1.72865 1.36637 1.19502 1.20760 1.46492 0.92146 0.86958 0.87706 1.24462 0.95796 1.00167 0.93638 1.69653 1.44549 1.36140 1.01721 0.86180 0.79483 0.83792 0.77435 1.19912 1.18374 1.20893 1.20201 1.08425 0.99170 0.93506 1.20299 0.97865 0.93450 0.95807 0.92892 0.92556 0.92100 0.84100 0.91536 0.91829 0.91989 0.91675 0.91645 0.92049 0.93027 0.94428 0.91188 0.87610 0.85134 0.91133 0.86806 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 8.93 37.16 0.33 -1.62 16 2 C 0.14 1.71 2.79 -68.86 -0.19 1.51 16 3 H 0.07 0.93 7.30 -51.92 -0.38 0.55 16 4 N -0.67 -7.28 3.69 -99.78 -0.37 -7.65 16 5 C 0.09 0.82 3.20 -66.59 -0.21 0.61 16 6 H 0.08 0.77 7.45 -51.93 -0.39 0.38 16 7 C -0.15 -1.22 4.89 -25.07 -0.12 -1.35 16 8 C -0.12 -0.91 6.91 -24.74 -0.17 -1.08 16 9 C -0.12 -0.95 6.36 -25.01 -0.16 -1.10 16 10 C -0.09 -0.80 3.51 -89.44 -0.31 -1.11 16 11 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 12 C -0.12 -1.25 8.06 37.16 0.30 -0.95 16 13 C -0.16 -2.51 4.96 -104.58 -0.52 -3.02 16 14 C -0.07 -1.27 9.66 -39.61 -0.38 -1.66 16 15 C -0.22 -4.78 9.17 -39.39 -0.36 -5.14 16 16 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 17 O -0.22 -5.90 8.59 0.07 0.00 -5.90 16 18 C -0.39 -11.07 9.95 30.89 0.31 -10.76 16 19 H 0.11 3.05 5.44 -52.49 -0.29 2.77 16 20 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 21 N -0.88 -25.77 13.96 55.48 0.77 -25.00 16 22 Si 0.91 21.94 28.62 -169.99 -4.86 17.08 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 C -0.19 -3.87 9.99 -39.39 -0.39 -4.26 16 27 C -0.06 -0.93 9.31 -39.61 -0.37 -1.30 16 28 H 0.05 0.49 5.88 -51.93 -0.31 0.19 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.34 3.50 6.73 -39.29 -0.26 3.24 16 32 H 0.07 0.55 7.57 -51.93 -0.39 0.15 16 33 H 0.06 0.51 7.36 -51.93 -0.38 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 7.84 -51.93 -0.41 0.11 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 0.51 7.46 -51.93 -0.39 0.13 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.85 7.81 -51.93 -0.41 0.45 16 41 H 0.11 1.66 8.03 -52.49 -0.42 1.24 16 42 H 0.13 3.00 5.64 -52.48 -0.30 2.70 16 43 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.11 2.14 8.06 -52.49 -0.42 1.72 16 45 H 0.11 1.54 7.24 -52.48 -0.38 1.16 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -28.79 351.10 -8.99 -37.78 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -7.21 Total: 4.53 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -2.61 Total: -26.14 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.41 Total: -32.65 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: 0.00 Total: -5.90 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.86 Total: 17.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.79 -8.99 -37.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071206433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.826 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds