Wall clock time and date at job start Tue Mar 31 2020 06:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47127 * 2 1 4 4 N 1.46903 * 109.47291 * 240.00249 * 2 1 3 5 5 C 1.46897 * 110.99783 * 84.99670 * 4 2 1 6 6 H 1.08994 * 110.02156 * 34.30072 * 5 4 2 7 7 C 1.54268 * 110.03286 * 272.90722 * 5 4 2 8 8 C 1.54888 * 104.19687 * 217.11073 * 7 5 4 9 9 C 1.54888 * 102.75111 * 37.94209 * 8 7 5 10 10 C 1.53881 * 110.03035 * 155.69269 * 5 4 2 11 11 H 1.08994 * 110.03100 * 238.56484 * 10 5 4 12 12 C 1.52997 * 110.03261 * 359.97438 * 10 5 4 13 13 C 1.50694 * 109.47392 * 119.99836 * 2 1 3 14 14 C 1.38301 * 119.93262 * 260.00062 * 13 2 1 15 15 C 1.38100 * 120.06954 * 180.02562 * 14 13 2 16 16 C 1.38880 * 119.93180 * 0.02562 * 15 14 13 17 17 O 1.35753 * 120.06801 * 179.97438 * 16 15 14 18 18 C 1.34821 * 117.00047 * 5.52931 * 17 16 15 19 19 H 1.07994 * 120.00555 * 354.94530 * 18 17 16 20 20 C 1.38658 * 119.99851 * 174.94789 * 18 17 16 21 21 N 1.31558 * 119.99765 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99990 * 359.97438 * 20 18 17 23 23 H 1.48511 * 109.47027 * 90.00420 * 22 20 18 24 24 H 1.48498 * 109.47442 * 330.00675 * 22 20 18 25 25 H 1.48500 * 109.47423 * 210.00317 * 22 20 18 26 26 C 1.38883 * 119.86060 * 0.24761 * 16 15 14 27 27 C 1.38096 * 119.92664 * 359.50043 * 26 16 15 28 28 H 1.08994 * 109.47474 * 60.00244 * 1 2 3 29 29 H 1.09004 * 109.46418 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47029 * 299.99371 * 1 2 3 31 31 H 1.00902 * 110.99530 * 321.04275 * 4 2 1 32 32 H 1.09002 * 110.48571 * 335.78267 * 7 5 4 33 33 H 1.08993 * 110.48759 * 98.42913 * 7 5 4 34 34 H 1.08996 * 110.75906 * 156.25487 * 8 7 5 35 35 H 1.09002 * 110.75479 * 279.44062 * 8 7 5 36 36 H 1.08993 * 110.48715 * 80.73597 * 9 8 7 37 37 H 1.09005 * 110.48604 * 203.25067 * 9 8 7 38 38 H 1.09004 * 109.46650 * 60.00066 * 12 10 5 39 39 H 1.08994 * 109.47072 * 179.97438 * 12 10 5 40 40 H 1.08995 * 109.47365 * 300.00353 * 12 10 5 41 41 H 1.08002 * 119.96460 * 0.02562 * 14 13 2 42 42 H 1.08005 * 120.03545 * 179.97438 * 15 14 13 43 43 H 0.97005 * 119.99347 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.03116 * 179.72180 * 26 16 15 45 45 H 1.08003 * 119.96436 * 180.22542 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0824 0.2227 -2.3468 6 1 2.3522 1.2240 -2.0112 7 6 0.7205 0.2569 -3.0705 8 6 1.0901 0.3654 -4.5708 9 6 2.3394 -0.5434 -4.6816 10 6 3.1127 -0.2855 -3.3706 11 1 3.8819 0.4696 -3.5325 12 6 3.7497 -1.5844 -2.8727 13 6 2.0324 -0.7103 1.2304 14 6 2.4587 0.0213 2.3239 15 6 2.9201 -0.6268 3.4528 16 6 2.9563 -2.0146 3.4890 17 8 3.4099 -2.6545 4.5970 18 6 3.7021 -1.8903 5.6686 19 1 3.6503 -0.8141 5.5948 20 6 4.0695 -2.4861 6.8655 21 7 4.3542 -1.7404 7.9113 22 14 4.1586 -4.3476 6.9935 23 1 5.5255 -4.8036 6.6339 24 1 3.1734 -4.9555 6.0635 25 1 3.8481 -4.7636 8.3848 26 6 2.5329 -2.7464 2.3871 27 6 2.0677 -2.0925 1.2633 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.4496 -1.4979 -1.4100 32 1 0.1642 -0.6609 -2.8802 33 1 0.1431 1.1263 -2.7561 34 1 0.2812 -0.0121 -5.1962 35 1 1.3328 1.3946 -4.8353 36 1 2.0446 -1.5903 -4.7514 37 1 2.9424 -0.2595 -5.5442 38 1 2.9757 -2.3401 -2.7379 39 1 4.4769 -1.9362 -3.6043 40 1 4.2496 -1.4026 -1.9214 41 1 2.4306 1.1005 2.2950 42 1 3.2532 -0.0549 4.3063 43 1 4.6115 -2.1573 8.7486 44 1 2.5641 -3.8257 2.4106 45 1 1.7348 -2.6610 0.4074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071206433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:55 Heat of formation + Delta-G solvation = -29.826477 kcal Electronic energy + Delta-G solvation = -22908.881111 eV Core-core repulsion = 19697.576350 eV Total energy + Delta-G solvation = -3211.304761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98924 -40.12115 -38.56036 -35.96598 -34.40712 -32.13850 -31.83539 -31.37300 -29.33264 -27.51381 -27.17817 -25.59024 -23.91062 -23.53365 -21.68842 -21.34408 -20.04310 -19.66084 -19.08740 -17.44679 -16.72874 -16.49668 -15.96660 -15.69940 -15.60719 -15.28905 -15.05527 -14.70109 -14.36071 -14.33796 -14.18567 -13.97129 -13.93302 -13.66378 -13.60689 -13.06845 -12.93446 -12.67270 -12.54005 -12.27700 -12.06250 -12.01962 -11.83720 -11.78008 -11.56668 -11.42186 -11.26038 -11.23981 -11.18096 -10.88035 -9.74679 -9.17001 -8.89224 -8.49182 -6.21257 0.62340 0.71589 1.31209 1.36085 1.51858 2.28704 2.77791 3.06620 3.19243 3.34912 3.73830 3.80065 4.04869 4.09553 4.11003 4.19478 4.37941 4.43816 4.49180 4.59875 4.62162 4.64846 4.73552 4.74117 4.81575 4.85754 4.92602 4.95798 5.01673 5.07030 5.12901 5.18258 5.27971 5.30050 5.31767 5.37571 5.45106 5.49207 5.57334 5.62064 5.70527 5.79855 5.85853 5.94664 6.27573 6.35783 6.62524 6.85548 7.61834 8.62741 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033332 B = 0.003090 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.838958 B = 9058.728670 C = 9393.836224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.143 3.857 3 H 0.080 0.920 4 N -0.674 5.674 5 C 0.088 3.912 6 H 0.072 0.928 7 C -0.147 4.147 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.088 4.088 11 H 0.065 0.935 12 C -0.119 4.119 13 C -0.129 4.129 14 C -0.075 4.075 15 C -0.236 4.236 16 C 0.115 3.885 17 O -0.248 6.248 18 C -0.398 4.398 19 H 0.079 0.921 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.972 3.028 23 H -0.266 1.266 24 H -0.263 1.263 25 H -0.267 1.267 26 C -0.193 4.193 27 C -0.048 4.048 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.346 0.654 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.045 0.955 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.284 0.716 44 H 0.124 0.876 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 2.868 -26.009 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.034 3.966 3 H 0.098 0.902 4 N -0.304 5.304 5 C -0.022 4.022 6 H 0.090 0.910 7 C -0.186 4.186 8 C -0.159 4.159 9 C -0.156 4.156 10 C -0.107 4.107 11 H 0.083 0.917 12 C -0.177 4.177 13 C -0.130 4.130 14 C -0.093 4.093 15 C -0.256 4.256 16 C 0.066 3.934 17 O -0.156 6.156 18 C -0.474 4.474 19 H 0.096 0.904 20 C -0.190 4.190 21 N -0.567 5.567 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.187 1.187 25 H -0.192 1.192 26 C -0.212 4.212 27 C -0.066 4.066 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.166 0.834 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.149 0.851 42 H 0.122 0.878 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.408 2.724 -25.584 26.774 hybrid contribution -0.481 -0.105 0.859 0.990 sum -7.889 2.619 -24.725 26.085 Atomic orbital electron populations 1.22541 0.95555 1.02544 1.02527 1.20211 0.92978 0.96332 0.87108 0.90205 1.60693 1.57400 1.09409 1.02913 1.22287 0.94412 0.95450 0.90018 0.91003 1.23157 0.97247 1.01996 0.96226 1.22425 0.97702 0.99986 0.95805 1.22461 0.96430 0.99931 0.96764 1.21781 0.96826 0.97929 0.94179 0.91670 1.21471 0.99806 0.96523 0.99873 1.19706 1.04139 0.93586 0.95612 1.20885 0.96682 0.99805 0.91971 1.21222 1.09497 0.94057 1.00795 1.19661 0.93980 0.91992 0.87740 1.83507 1.75504 1.36601 1.19991 1.20701 1.46972 0.91466 0.88279 0.90352 1.25289 0.95606 1.04930 0.93148 1.69738 1.46493 1.38040 1.02443 0.85201 0.79532 0.77955 0.77919 1.19100 1.18695 1.19202 1.20520 1.07639 0.99888 0.93174 1.20714 0.96233 0.93982 0.95658 0.90747 0.92238 0.92855 0.83369 0.91205 0.91393 0.91088 0.91349 0.91539 0.91467 0.92766 0.94004 0.93549 0.85145 0.87789 0.90626 0.85756 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 8.93 71.98 0.64 -2.45 16 2 C 0.14 3.04 2.79 44.17 0.12 3.16 16 3 H 0.08 1.69 7.30 -2.38 -0.02 1.68 16 4 N -0.67 -12.34 3.69 -469.59 -1.73 -14.07 16 5 C 0.09 1.37 3.20 45.64 0.15 1.52 16 6 H 0.07 1.22 7.45 -2.39 -0.02 1.20 16 7 C -0.15 -1.79 4.89 31.67 0.15 -1.63 16 8 C -0.12 -1.33 6.91 31.88 0.22 -1.11 16 9 C -0.12 -1.45 6.36 31.71 0.20 -1.25 16 10 C -0.09 -1.36 3.51 -10.03 -0.04 -1.40 16 11 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 12 C -0.12 -2.14 8.06 71.98 0.58 -1.56 16 13 C -0.13 -3.84 4.96 -19.84 -0.10 -3.94 16 14 C -0.07 -2.65 9.66 22.25 0.21 -2.43 16 15 C -0.24 -10.71 9.17 22.39 0.21 -10.50 16 16 C 0.11 5.53 6.65 22.58 0.15 5.68 16 17 O -0.25 -13.87 8.59 -22.68 -0.19 -14.06 16 18 C -0.40 -24.06 9.95 67.92 0.68 -23.39 16 19 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 20 C 0.01 0.48 5.49 84.83 0.47 0.95 16 21 N -0.93 -56.43 13.96 21.61 0.30 -56.13 16 22 Si 0.97 46.42 28.62 68.60 1.96 48.38 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 26 C -0.19 -7.56 9.99 22.39 0.22 -7.33 16 27 C -0.05 -1.47 9.31 22.25 0.21 -1.27 16 28 H 0.07 1.06 5.88 -2.39 -0.01 1.04 16 29 H 0.06 1.05 8.13 -2.38 -0.02 1.03 16 30 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.35 5.66 6.73 -89.69 -0.60 5.06 16 32 H 0.07 0.83 7.57 -2.39 -0.02 0.82 16 33 H 0.07 0.79 7.36 -2.39 -0.02 0.78 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.82 7.84 -2.39 -0.02 0.80 16 37 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.05 0.93 7.46 -2.38 -0.02 0.91 16 39 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 1.05 7.81 -2.39 -0.02 1.03 16 41 H 0.13 3.91 8.03 -2.91 -0.02 3.89 16 42 H 0.10 5.21 5.64 -2.91 -0.02 5.19 16 43 H 0.28 15.86 8.31 -92.70 -0.77 15.08 16 44 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 45 H 0.15 3.48 7.24 -2.91 -0.02 3.46 16 Total: -1.00 -65.81 351.10 4.78 -61.03 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.37 Total: 21.82 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 4.08 Total: -46.96 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.43 Total: -70.20 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.19 Total: -14.06 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 1.96 Total: 48.38 kcal Total: -65.81 4.78 -61.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071206433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.201 kcal (2) G-P(sol) polarization free energy of solvation -65.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds