Wall clock time and date at job start Tue Mar 31 2020 05:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47441 * 2 1 4 4 H 1.09007 * 109.46990 * 57.91828 * 3 2 1 5 5 C 1.52996 * 109.47379 * 177.92088 * 3 2 1 6 6 C 1.50700 * 109.47257 * 293.83331 * 5 3 2 7 7 O 1.21298 * 119.99688 * 353.64387 * 6 5 3 8 8 N 1.34776 * 120.00485 * 173.63886 * 6 5 3 9 9 C 1.37095 * 120.00385 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00041 * 326.57440 * 9 8 6 11 11 C 1.38945 * 119.99882 * 146.57110 * 9 8 6 12 12 N 1.31416 * 120.00218 * 337.18080 * 11 9 8 13 13 Si 1.86805 * 119.99906 * 157.18372 * 11 9 8 14 14 H 1.48502 * 109.47297 * 59.99778 * 13 11 9 15 15 H 1.48501 * 109.46899 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47020 * 299.99735 * 13 11 9 17 17 C 1.46500 * 119.99769 * 0.02562 * 8 6 5 18 18 C 1.53004 * 109.47186 * 85.69933 * 17 8 6 19 19 C 1.50703 * 109.47300 * 297.92289 * 3 2 1 20 20 C 1.38232 * 119.99501 * 299.72748 * 19 3 2 21 21 C 1.38243 * 119.99739 * 179.76349 * 20 19 3 22 22 C 1.38230 * 119.99797 * 0.50629 * 21 20 19 23 23 C 1.50701 * 120.00369 * 179.72011 * 22 21 20 24 24 C 1.38234 * 120.00335 * 359.74685 * 22 21 20 25 25 C 1.38230 * 120.00174 * 119.99728 * 19 3 2 26 26 H 1.09001 * 109.47292 * 57.40656 * 1 2 3 27 27 H 1.09002 * 109.47409 * 177.41444 * 1 2 3 28 28 H 1.09000 * 109.46914 * 297.41395 * 1 2 3 29 29 H 1.08997 * 109.47359 * 120.00372 * 2 1 3 30 30 H 1.08998 * 109.46840 * 240.00277 * 2 1 3 31 31 H 1.08999 * 109.47130 * 53.83497 * 5 3 2 32 32 H 1.09000 * 109.47372 * 173.83416 * 5 3 2 33 33 H 0.97001 * 119.99798 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47326 * 205.70340 * 17 8 6 35 35 H 1.09004 * 109.47072 * 325.70466 * 17 8 6 36 36 H 1.08998 * 109.47320 * 300.00411 * 18 17 8 37 37 H 1.09004 * 109.46680 * 60.00293 * 18 17 8 38 38 H 1.09002 * 109.46794 * 179.97438 * 18 17 8 39 39 H 1.07994 * 120.00645 * 359.97438 * 20 19 3 40 40 H 1.07996 * 119.99985 * 180.22771 * 21 20 19 41 41 H 1.09002 * 109.47493 * 270.02988 * 23 22 21 42 42 H 1.09007 * 109.46796 * 30.02261 * 23 22 21 43 43 H 1.08993 * 109.47479 * 150.01665 * 23 22 21 44 44 H 1.08002 * 120.00723 * 179.97438 * 24 22 21 45 45 H 1.08003 * 120.00213 * 0.02562 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6465 1.9670 0.8708 5 6 3.5691 1.4427 0.0523 6 6 4.0266 0.8845 1.3752 7 8 3.2144 0.6298 2.2395 8 7 5.3381 0.6681 1.5982 9 6 5.7543 0.1607 2.8018 10 1 5.2254 0.4172 3.7079 11 6 6.8565 -0.6835 2.8561 12 7 7.2259 -1.3514 1.7863 13 14 7.8132 -0.8692 4.4498 14 1 6.9122 -1.3869 5.5106 15 1 8.9348 -1.8209 4.2457 16 1 8.3528 0.4520 4.8599 17 6 6.3190 0.9761 0.5545 18 6 6.7130 2.4518 0.6444 19 6 1.5803 2.1379 -1.2554 20 6 1.9615 1.6538 -2.4928 21 6 1.5357 2.2888 -3.6445 22 6 0.7374 3.4140 -3.5586 23 6 0.2784 4.1101 -4.8139 24 6 0.3605 3.9012 -2.3210 25 6 0.7819 3.2631 -1.1694 26 1 -0.3634 0.5536 -0.8658 27 1 -0.3634 -1.0266 -0.0464 28 1 -0.3633 0.4732 0.9123 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.9605 0.8264 -0.7570 32 1 3.9363 2.4631 -0.0579 33 1 7.9957 -1.9405 1.8241 34 1 7.2038 0.3547 0.6927 35 1 5.8833 0.7754 -0.4243 36 1 5.8282 3.0732 0.5063 37 1 7.1487 2.6525 1.6232 38 1 7.4432 2.6808 -0.1318 39 1 2.5891 0.7775 -2.5599 40 1 1.8305 1.9085 -4.6114 41 1 1.0067 4.8710 -5.0946 42 1 0.1850 3.3819 -5.6197 43 1 -0.6884 4.5806 -4.6357 44 1 -0.2629 4.7806 -2.2538 45 1 0.4880 3.6441 -0.2025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078090777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:44 Heat of formation + Delta-G solvation = -31.878156 kcal Electronic energy + Delta-G solvation = -23408.460895 eV Core-core repulsion = 20197.067167 eV Total energy + Delta-G solvation = -3211.393728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.75762 -38.48962 -35.86985 -34.67265 -32.04882 -31.85913 -30.81319 -29.88807 -29.39497 -26.96432 -25.05019 -23.43560 -22.75425 -22.12146 -21.59802 -19.83329 -18.42587 -16.82168 -16.47640 -15.46139 -15.35472 -14.85231 -14.78303 -14.27767 -14.13332 -14.04818 -13.71317 -13.34089 -13.26788 -12.88828 -12.75702 -12.59321 -12.29288 -12.06512 -11.84334 -11.77012 -11.56462 -11.37664 -11.10181 -11.02046 -10.95228 -10.80962 -10.49678 -10.36407 -10.33288 -10.18696 -10.05832 -9.95043 -8.89649 -8.80223 -8.39672 -8.19757 -7.44222 -6.29777 -3.89806 1.46475 1.52275 3.20806 3.26800 3.30750 3.86193 3.97842 4.18937 4.77140 4.85942 4.92637 5.03590 5.11782 5.17625 5.23639 5.40938 5.47823 5.56056 5.58592 5.64390 5.72928 5.77922 5.81781 5.89307 5.98305 6.00921 6.13188 6.16985 6.23448 6.27204 6.32549 6.36518 6.46959 6.52025 6.54154 6.58929 6.65540 6.67396 6.91249 6.92814 7.00049 7.15460 7.31168 7.63003 8.28777 8.56174 9.24099 9.48026 10.08483 10.73626 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025461 B = 0.003864 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.450722 B = 7243.793281 C = 7748.549961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.031 4.031 4 H 0.084 0.916 5 C -0.125 4.125 6 C 0.458 3.542 7 O -0.581 6.581 8 N -0.442 5.442 9 C -0.307 4.307 10 H 0.091 0.909 11 C 0.035 3.965 12 N -0.870 5.870 13 Si 0.915 3.085 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.094 3.906 18 C -0.163 4.163 19 C -0.063 4.063 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.121 4.121 25 C -0.115 4.115 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.267 0.733 34 H 0.113 0.887 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.116 0.884 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.450 8.141 -11.740 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.050 4.050 4 H 0.102 0.898 5 C -0.165 4.165 6 C 0.247 3.753 7 O -0.466 6.466 8 N -0.161 5.161 9 C -0.435 4.435 10 H 0.109 0.891 11 C -0.169 4.169 12 N -0.508 5.508 13 Si 0.742 3.258 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.030 4.030 18 C -0.222 4.222 19 C -0.063 4.063 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.167 4.167 24 C -0.139 4.139 25 C -0.133 4.133 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.131 0.869 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.679 7.863 -11.358 16.314 hybrid contribution 0.714 -0.094 0.562 0.914 sum -7.965 7.768 -10.796 15.503 Atomic orbital electron populations 1.21730 0.96518 1.00785 1.01222 1.21619 0.95227 0.95504 1.03023 1.19949 0.94421 0.96422 0.94170 0.89800 1.21673 0.95154 1.01700 0.97993 1.20257 0.83081 0.83217 0.88754 1.90491 1.52566 1.56550 1.46966 1.43531 1.03406 1.55101 1.14019 1.19413 1.12490 1.25968 0.85611 0.89115 1.25292 0.99082 0.94238 0.98249 1.69919 1.26508 1.24626 1.29769 0.86175 0.79169 0.78068 0.82380 1.19791 1.21036 1.19980 1.21597 0.96846 0.94683 0.89879 1.22193 1.00206 0.98330 1.01453 1.20028 0.96234 0.94979 0.95108 1.21040 0.99925 1.00019 0.91884 1.20978 0.98603 0.95932 0.98254 1.19832 0.98930 0.96482 0.94980 1.20745 1.00995 1.00060 0.94949 1.20957 1.00917 0.99963 0.92050 1.21088 0.98274 0.95651 0.98294 0.93340 0.93401 0.92951 0.89409 0.92897 0.90378 0.90591 0.92271 0.86937 0.93452 0.93971 0.92525 0.93214 0.86059 0.86487 0.91519 0.91854 0.91902 0.86559 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.74 37.16 0.36 -1.77 16 2 C -0.12 -1.99 5.07 -26.73 -0.14 -2.12 16 3 C -0.03 -0.52 1.71 -91.77 -0.16 -0.67 16 4 H 0.08 1.52 7.55 -51.92 -0.39 1.13 16 5 C -0.12 -2.32 3.62 -27.89 -0.10 -2.42 16 6 C 0.46 11.03 7.19 -10.99 -0.08 10.95 16 7 O -0.58 -15.73 14.12 5.54 0.08 -15.66 16 8 N -0.44 -11.16 2.56 -114.81 -0.29 -11.45 16 9 C -0.31 -8.53 8.98 -14.94 -0.13 -8.66 16 10 H 0.09 2.65 7.70 -52.49 -0.40 2.24 16 11 C 0.03 0.93 4.92 -17.47 -0.09 0.84 16 12 N -0.87 -23.38 11.32 55.50 0.63 -22.75 16 13 Si 0.92 20.66 29.61 -169.99 -5.03 15.63 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 C 0.09 2.06 5.45 -4.04 -0.02 2.04 16 18 C -0.16 -3.01 10.19 37.16 0.38 -2.63 16 19 C -0.06 -0.91 3.57 -104.63 -0.37 -1.29 16 20 C -0.11 -1.49 8.75 -39.58 -0.35 -1.83 16 21 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 22 C -0.10 -1.16 5.88 -104.63 -0.62 -1.77 16 23 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 24 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 25 C -0.12 -1.52 9.67 -39.58 -0.38 -1.90 16 26 H 0.05 0.67 7.20 -51.93 -0.37 0.30 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.82 6.25 -51.93 -0.32 1.49 16 30 H 0.05 0.85 7.33 -51.93 -0.38 0.47 16 31 H 0.08 1.38 6.53 -51.93 -0.34 1.04 16 32 H 0.08 1.33 6.90 -51.93 -0.36 0.97 16 33 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.11 2.72 5.32 -51.93 -0.28 2.44 16 35 H 0.05 0.94 6.44 -51.93 -0.33 0.61 16 36 H 0.04 0.73 6.86 -51.93 -0.36 0.38 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.12 1.58 7.17 -52.49 -0.38 1.21 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 43 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.12 1.47 7.95 -52.48 -0.42 1.06 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -30.06 357.60 -8.60 -38.66 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -7.27 Total: 5.61 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.10 Total: -15.44 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.33 Total: -34.20 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: 0.08 Total: -15.66 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.06 -8.60 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078090777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.781 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds