Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47441 * 2 1 4 4 H 1.09007 * 109.46990 * 57.91828 * 3 2 1 5 5 C 1.52996 * 109.47379 * 177.92088 * 3 2 1 6 6 C 1.50700 * 109.47257 * 293.83331 * 5 3 2 7 7 O 1.21298 * 119.99688 * 353.64387 * 6 5 3 8 8 N 1.34776 * 120.00485 * 173.63886 * 6 5 3 9 9 C 1.37095 * 120.00385 * 179.97438 * 8 6 5 10 10 H 1.08001 * 120.00041 * 326.57440 * 9 8 6 11 11 C 1.38945 * 119.99882 * 146.57110 * 9 8 6 12 12 N 1.31416 * 120.00218 * 337.18080 * 11 9 8 13 13 Si 1.86805 * 119.99906 * 157.18372 * 11 9 8 14 14 H 1.48502 * 109.47297 * 59.99778 * 13 11 9 15 15 H 1.48501 * 109.46899 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47020 * 299.99735 * 13 11 9 17 17 C 1.46500 * 119.99769 * 0.02562 * 8 6 5 18 18 C 1.53004 * 109.47186 * 85.69933 * 17 8 6 19 19 C 1.50703 * 109.47300 * 297.92289 * 3 2 1 20 20 C 1.38232 * 119.99501 * 299.72748 * 19 3 2 21 21 C 1.38243 * 119.99739 * 179.76349 * 20 19 3 22 22 C 1.38230 * 119.99797 * 0.50629 * 21 20 19 23 23 C 1.50701 * 120.00369 * 179.72011 * 22 21 20 24 24 C 1.38234 * 120.00335 * 359.74685 * 22 21 20 25 25 C 1.38230 * 120.00174 * 119.99728 * 19 3 2 26 26 H 1.09001 * 109.47292 * 57.40656 * 1 2 3 27 27 H 1.09002 * 109.47409 * 177.41444 * 1 2 3 28 28 H 1.09000 * 109.46914 * 297.41395 * 1 2 3 29 29 H 1.08997 * 109.47359 * 120.00372 * 2 1 3 30 30 H 1.08998 * 109.46840 * 240.00277 * 2 1 3 31 31 H 1.08999 * 109.47130 * 53.83497 * 5 3 2 32 32 H 1.09000 * 109.47372 * 173.83416 * 5 3 2 33 33 H 0.97001 * 119.99798 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47326 * 205.70340 * 17 8 6 35 35 H 1.09004 * 109.47072 * 325.70466 * 17 8 6 36 36 H 1.08998 * 109.47320 * 300.00411 * 18 17 8 37 37 H 1.09004 * 109.46680 * 60.00293 * 18 17 8 38 38 H 1.09002 * 109.46794 * 179.97438 * 18 17 8 39 39 H 1.07994 * 120.00645 * 359.97438 * 20 19 3 40 40 H 1.07996 * 119.99985 * 180.22771 * 21 20 19 41 41 H 1.09002 * 109.47493 * 270.02988 * 23 22 21 42 42 H 1.09007 * 109.46796 * 30.02261 * 23 22 21 43 43 H 1.08993 * 109.47479 * 150.01665 * 23 22 21 44 44 H 1.08002 * 120.00723 * 179.97438 * 24 22 21 45 45 H 1.08003 * 120.00213 * 0.02562 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6465 1.9670 0.8708 5 6 3.5691 1.4427 0.0523 6 6 4.0266 0.8845 1.3752 7 8 3.2144 0.6298 2.2395 8 7 5.3381 0.6681 1.5982 9 6 5.7543 0.1607 2.8018 10 1 5.2254 0.4172 3.7079 11 6 6.8565 -0.6835 2.8561 12 7 7.2259 -1.3514 1.7863 13 14 7.8132 -0.8692 4.4498 14 1 6.9122 -1.3869 5.5106 15 1 8.9348 -1.8209 4.2457 16 1 8.3528 0.4520 4.8599 17 6 6.3190 0.9761 0.5545 18 6 6.7130 2.4518 0.6444 19 6 1.5803 2.1379 -1.2554 20 6 1.9615 1.6538 -2.4928 21 6 1.5357 2.2888 -3.6445 22 6 0.7374 3.4140 -3.5586 23 6 0.2784 4.1101 -4.8139 24 6 0.3605 3.9012 -2.3210 25 6 0.7819 3.2631 -1.1694 26 1 -0.3634 0.5536 -0.8658 27 1 -0.3634 -1.0266 -0.0464 28 1 -0.3633 0.4732 0.9123 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 3.9605 0.8264 -0.7570 32 1 3.9363 2.4631 -0.0579 33 1 7.9957 -1.9405 1.8241 34 1 7.2038 0.3547 0.6927 35 1 5.8833 0.7754 -0.4243 36 1 5.8282 3.0732 0.5063 37 1 7.1487 2.6525 1.6232 38 1 7.4432 2.6808 -0.1318 39 1 2.5891 0.7775 -2.5599 40 1 1.8305 1.9085 -4.6114 41 1 1.0067 4.8710 -5.0946 42 1 0.1850 3.3819 -5.6197 43 1 -0.6884 4.5806 -4.6357 44 1 -0.2629 4.7806 -2.2538 45 1 0.4880 3.6441 -0.2025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078090777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = -46.106453 kcal Electronic energy + Delta-G solvation = -23409.077880 eV Core-core repulsion = 20197.067167 eV Total energy + Delta-G solvation = -3212.010713 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03215 -40.05503 -37.34992 -36.38846 -34.01869 -32.84556 -31.76177 -31.35956 -31.09399 -28.13005 -26.71581 -24.89993 -23.81867 -23.72461 -22.69457 -21.16558 -20.08373 -18.71940 -18.03721 -17.11772 -16.54680 -16.31449 -16.00551 -15.94360 -15.65542 -15.24356 -14.88846 -14.52191 -14.38592 -14.33329 -14.18590 -14.05559 -13.60527 -13.34128 -13.28853 -12.94954 -12.88201 -12.76384 -12.71370 -12.62932 -12.27343 -12.20475 -12.09221 -11.91304 -11.80591 -11.70767 -11.46740 -11.38467 -10.85488 -10.22493 -9.74594 -9.43432 -9.28526 -8.32566 -6.01017 0.49915 0.57857 1.38243 1.40866 1.50927 2.09596 2.30629 2.89031 3.03043 3.13781 3.78759 3.79996 4.10867 4.13465 4.17657 4.23053 4.26841 4.31525 4.36450 4.52845 4.56673 4.63062 4.65628 4.69942 4.78386 4.87892 4.90804 4.92594 4.96343 5.02842 5.04822 5.11117 5.19809 5.27214 5.31595 5.35285 5.39971 5.45400 5.48442 5.59126 5.64532 5.77890 5.87024 6.21074 6.22443 6.57171 7.21926 7.53166 8.13455 8.69038 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025461 B = 0.003864 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.450722 B = 7243.793281 C = 7748.549961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.021 4.021 4 H 0.062 0.938 5 C -0.109 4.109 6 C 0.446 3.554 7 O -0.622 6.622 8 N -0.456 5.456 9 C -0.343 4.343 10 H 0.062 0.938 11 C 0.004 3.996 12 N -0.887 5.887 13 Si 0.978 3.022 14 H -0.278 1.278 15 H -0.271 1.271 16 H -0.266 1.266 17 C 0.093 3.907 18 C -0.153 4.153 19 C -0.078 4.078 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.123 4.123 25 C -0.125 4.125 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.273 0.727 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.139 0.861 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 9.444 -14.122 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C -0.040 4.040 4 H 0.081 0.919 5 C -0.149 4.149 6 C 0.236 3.764 7 O -0.509 6.509 8 N -0.175 5.175 9 C -0.471 4.471 10 H 0.080 0.920 11 C -0.199 4.199 12 N -0.525 5.525 13 Si 0.801 3.199 14 H -0.204 1.204 15 H -0.195 1.195 16 H -0.190 1.190 17 C -0.031 4.031 18 C -0.211 4.211 19 C -0.078 4.078 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.100 4.100 23 C -0.167 4.167 24 C -0.141 4.141 25 C -0.143 4.143 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.157 0.843 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.709 9.176 -13.769 18.698 hybrid contribution 0.690 -0.509 1.248 1.514 sum -8.019 8.667 -12.520 17.210 Atomic orbital electron populations 1.21640 0.94586 1.01613 1.01476 1.21537 0.96981 0.95532 1.01126 1.19768 0.92955 0.96238 0.95062 0.91917 1.21589 0.96594 1.02088 0.94659 1.21188 0.82507 0.82511 0.90218 1.90455 1.53556 1.58114 1.48819 1.43815 1.04528 1.55084 1.14037 1.19353 1.13860 1.27854 0.86065 0.92001 1.26004 0.99034 0.93310 1.01502 1.69984 1.26698 1.24505 1.31293 0.85247 0.77824 0.78515 0.78288 1.20390 1.19544 1.19048 1.21692 0.95242 0.96503 0.89631 1.22083 1.01391 0.95868 1.01736 1.19735 0.98054 0.95925 0.94043 1.21105 1.00297 1.00316 0.92058 1.21250 0.98310 0.95968 0.98563 1.20243 0.97722 0.96000 0.96060 1.20807 1.01769 1.00392 0.93682 1.21237 1.00789 1.00439 0.91637 1.21199 0.98352 0.95513 0.99218 0.91995 0.92380 0.93566 0.93834 0.92039 0.89244 0.89082 0.91708 0.89189 0.91705 0.92975 0.94194 0.89775 0.86152 0.84378 0.90516 0.90753 0.90721 0.84324 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.74 71.98 0.70 -3.30 16 2 C -0.11 -4.02 5.07 30.59 0.16 -3.87 16 3 C -0.02 -0.73 1.71 -11.54 -0.02 -0.75 16 4 H 0.06 2.38 7.55 -2.38 -0.02 2.37 16 5 C -0.11 -4.10 3.62 29.85 0.11 -3.99 16 6 C 0.45 22.31 7.19 87.66 0.63 22.94 16 7 O -0.62 -35.76 14.12 -3.09 -0.04 -35.81 16 8 N -0.46 -23.76 2.56 -635.53 -1.62 -25.39 16 9 C -0.34 -19.87 8.98 84.04 0.75 -19.11 16 10 H 0.06 3.85 7.70 -2.91 -0.02 3.82 16 11 C 0.00 0.21 4.92 84.92 0.42 0.62 16 12 N -0.89 -48.14 11.32 21.66 0.25 -47.89 16 13 Si 0.98 42.90 29.61 68.60 2.03 44.93 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 16 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 17 C 0.09 4.05 5.45 86.38 0.47 4.52 16 18 C -0.15 -5.44 10.19 71.98 0.73 -4.71 16 19 C -0.08 -2.16 3.57 -19.87 -0.07 -2.23 16 20 C -0.12 -3.01 8.75 22.27 0.19 -2.81 16 21 C -0.12 -2.58 9.70 22.27 0.22 -2.36 16 22 C -0.10 -1.94 5.88 -19.87 -0.12 -2.05 16 23 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 24 C -0.12 -2.55 9.70 22.27 0.22 -2.34 16 25 C -0.12 -3.13 9.67 22.27 0.22 -2.91 16 26 H 0.06 1.65 7.20 -2.39 -0.02 1.63 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.04 1.91 6.25 -2.39 -0.01 1.90 16 30 H 0.06 2.00 7.33 -2.39 -0.02 1.98 16 31 H 0.09 3.13 6.53 -2.39 -0.02 3.12 16 32 H 0.09 3.12 6.90 -2.39 -0.02 3.10 16 33 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 34 H 0.09 4.38 5.32 -2.39 -0.01 4.36 16 35 H 0.06 2.54 6.44 -2.39 -0.02 2.52 16 36 H 0.05 1.73 6.86 -2.39 -0.02 1.72 16 37 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 39 H 0.12 2.97 7.17 -2.91 -0.02 2.95 16 40 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.81 8.09 -2.38 -0.02 0.79 16 43 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 44 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 45 H 0.12 2.90 7.95 -2.91 -0.02 2.88 16 Total: -1.00 -67.74 357.60 6.89 -60.85 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.96 Total: 26.35 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 5.32 Total: -23.04 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.38 Total: -73.28 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.04 Total: -35.81 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -67.74 6.89 -60.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078090777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.745 kcal (2) G-P(sol) polarization free energy of solvation -67.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds