Wall clock time and date at job start Tue Mar 31 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47195 * 2 1 4 4 H 1.09000 * 109.47195 * 305.00403 * 3 2 1 5 5 C 1.52998 * 109.47283 * 184.99931 * 3 2 1 6 6 C 1.50706 * 109.46868 * 65.00043 * 5 3 2 7 7 O 1.21289 * 120.00159 * 0.02562 * 6 5 3 8 8 N 1.34774 * 119.99572 * 179.97438 * 6 5 3 9 9 C 1.37105 * 119.99822 * 180.02562 * 8 6 5 10 10 H 1.08007 * 119.99452 * 326.16354 * 9 8 6 11 11 C 1.38946 * 120.00260 * 146.16743 * 9 8 6 12 12 N 1.31417 * 119.99795 * 337.67804 * 11 9 8 13 13 Si 1.86798 * 120.00108 * 157.68355 * 11 9 8 14 14 H 1.48497 * 109.46997 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47022 * 119.99972 * 13 11 9 16 16 H 1.48499 * 109.46753 * 239.99891 * 13 11 9 17 17 C 1.46499 * 120.00670 * 0.02562 * 8 6 5 18 18 C 1.53001 * 109.46958 * 84.74682 * 17 8 6 19 19 C 1.50699 * 109.46849 * 65.00245 * 3 2 1 20 20 C 1.38236 * 119.99951 * 59.72362 * 19 3 2 21 21 C 1.38243 * 119.99670 * 179.78983 * 20 19 3 22 22 C 1.38227 * 120.00171 * 0.44208 * 21 20 19 23 23 C 1.50703 * 120.00420 * 179.83535 * 22 21 20 24 24 C 1.38238 * 119.99874 * 359.81299 * 22 21 20 25 25 C 1.38228 * 120.00188 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47034 * 299.99791 * 1 2 3 27 27 H 1.09001 * 109.46940 * 59.99667 * 1 2 3 28 28 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46871 * 240.00697 * 2 1 3 30 30 H 1.09003 * 109.47370 * 120.00027 * 2 1 3 31 31 H 1.08998 * 109.47310 * 184.99992 * 5 3 2 32 32 H 1.08998 * 109.47120 * 305.00863 * 5 3 2 33 33 H 0.96998 * 119.99699 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47428 * 204.75050 * 17 8 6 35 35 H 1.08999 * 109.46749 * 324.75219 * 17 8 6 36 36 H 1.09000 * 109.47389 * 180.02562 * 18 17 8 37 37 H 1.09011 * 109.47034 * 300.00402 * 18 17 8 38 38 H 1.09001 * 109.46971 * 60.00120 * 18 17 8 39 39 H 1.07992 * 120.00269 * 0.02562 * 20 19 3 40 40 H 1.08003 * 119.99478 * 180.28167 * 21 20 19 41 41 H 1.08993 * 109.47051 * 269.98235 * 23 22 21 42 42 H 1.09004 * 109.46423 * 29.98001 * 23 22 21 43 43 H 1.08999 * 109.47292 * 149.97670 * 23 22 21 44 44 H 1.07999 * 119.99830 * 179.97438 * 24 22 21 45 45 H 1.08005 * 120.00075 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 6 3.9589 0.8822 -1.4673 7 8 3.1043 0.5165 -2.2464 8 7 5.2610 0.7868 -1.8017 9 6 5.6196 0.2758 -3.0224 10 1 5.0290 -0.5074 -3.4745 11 6 6.7426 0.7654 -3.6778 12 7 7.2028 1.9619 -3.3884 13 14 7.5983 -0.2770 -4.9703 14 1 6.8890 -1.5742 -5.1091 15 1 7.5834 0.4377 -6.2720 16 1 9.0032 -0.5233 -4.5569 17 6 6.2933 1.2289 -0.8610 18 6 6.6079 0.0976 0.1198 19 6 1.6414 2.1162 1.2877 20 6 2.0721 1.6047 2.4976 21 6 1.7100 2.2252 3.6786 22 6 0.9097 3.3519 3.6502 23 6 0.5118 4.0263 4.9379 24 6 0.4746 3.8604 2.4406 25 6 0.8403 3.2425 1.2595 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.9355 2.4655 -0.0366 32 1 3.9954 0.8311 0.6658 33 1 7.9871 2.3035 -3.8457 34 1 7.1962 1.4947 -1.4108 35 1 5.9344 2.0982 -0.3099 36 1 7.3756 0.4266 0.8201 37 1 5.7049 -0.1682 0.6697 38 1 6.9668 -0.7717 -0.4313 39 1 2.6947 0.7225 2.5199 40 1 2.0503 1.8282 4.6236 41 1 -0.4216 3.5956 5.3002 42 1 1.2938 3.8775 5.6825 43 1 0.3756 5.0933 4.7622 44 1 -0.1511 4.7404 2.4185 45 1 0.5000 3.6395 0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078090778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:46 Heat of formation + Delta-G solvation = -31.400003 kcal Electronic energy + Delta-G solvation = -23412.343887 eV Core-core repulsion = 20200.970893 eV Total energy + Delta-G solvation = -3211.372994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.75790 -38.50167 -35.87664 -34.66471 -32.05643 -31.86732 -30.81442 -29.88975 -29.40386 -26.96266 -25.05286 -23.42132 -22.76544 -22.15011 -21.58207 -19.82583 -18.46926 -16.84686 -16.43842 -15.47167 -15.32453 -14.97787 -14.73023 -14.25968 -14.17905 -13.98144 -13.67613 -13.40035 -13.28438 -12.87474 -12.76010 -12.49505 -12.34052 -12.16392 -11.85146 -11.78601 -11.57328 -11.29769 -11.13544 -11.05872 -10.96090 -10.82157 -10.47151 -10.38971 -10.29076 -10.21188 -10.03498 -9.96256 -8.90620 -8.80040 -8.38363 -8.19188 -7.43630 -6.29902 -3.90304 1.46698 1.52488 3.16757 3.27776 3.34342 3.86239 3.97537 4.18618 4.77114 4.86367 4.91994 5.04784 5.12012 5.15638 5.24244 5.40677 5.47948 5.55275 5.57578 5.63658 5.72875 5.77654 5.85124 5.86830 5.94643 6.01145 6.13500 6.15462 6.23186 6.26165 6.28994 6.43479 6.45350 6.46457 6.54557 6.59191 6.64980 6.67271 6.91090 6.93039 6.98987 7.15610 7.30900 7.62938 8.29182 8.55936 9.24054 9.47725 10.08139 10.73797 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.003854 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.848807 B = 7262.535887 C = 7718.655039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.031 4.031 4 H 0.083 0.917 5 C -0.125 4.125 6 C 0.459 3.541 7 O -0.580 6.580 8 N -0.442 5.442 9 C -0.305 4.305 10 H 0.092 0.908 11 C 0.034 3.966 12 N -0.870 5.870 13 Si 0.915 3.085 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.095 3.905 18 C -0.164 4.164 19 C -0.064 4.064 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.114 4.114 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.050 2.122 14.516 16.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.049 4.049 4 H 0.101 0.899 5 C -0.166 4.166 6 C 0.247 3.753 7 O -0.464 6.464 8 N -0.161 5.161 9 C -0.433 4.433 10 H 0.110 0.890 11 C -0.170 4.170 12 N -0.509 5.509 13 Si 0.741 3.259 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.029 4.029 18 C -0.222 4.222 19 C -0.064 4.064 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.102 4.102 23 C -0.167 4.167 24 C -0.138 4.138 25 C -0.132 4.132 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.295 2.058 14.057 16.451 hybrid contribution 0.679 -0.261 -0.504 0.885 sum -7.616 1.797 13.553 15.650 Atomic orbital electron populations 1.21717 0.96564 1.00734 1.01185 1.21692 0.95292 0.95594 1.03026 1.19950 0.94792 0.96575 0.93615 0.89902 1.21677 0.95351 1.01962 0.97570 1.20266 0.83420 0.83048 0.88546 1.90474 1.49279 1.53265 1.53414 1.43551 1.03079 1.55101 1.14394 1.19500 1.10658 1.17375 0.95777 0.89038 1.25311 0.98856 0.94911 0.97883 1.69938 1.24164 1.14129 1.42647 0.86057 0.79063 0.80464 0.80272 1.19224 1.20846 1.20665 1.21576 0.96333 0.94194 0.90808 1.22206 1.00128 1.00745 0.99121 1.20040 0.96186 0.94945 0.95217 1.21009 1.00076 0.99951 0.91882 1.20968 0.98926 0.95938 0.97979 1.19832 0.98799 0.96499 0.95087 1.20745 1.01397 1.00024 0.94583 1.20962 1.00690 1.00107 0.92066 1.21100 0.98339 0.95717 0.98074 0.93475 0.92881 0.93465 0.88922 0.93147 0.90368 0.90526 0.92378 0.86983 0.93477 0.93195 0.93948 0.92516 0.86171 0.86521 0.91591 0.91828 0.91847 0.86529 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.73 37.16 0.36 -1.72 16 2 C -0.12 -1.96 5.08 -26.73 -0.14 -2.09 16 3 C -0.03 -0.51 1.69 -91.77 -0.15 -0.67 16 4 H 0.08 1.53 7.69 -51.93 -0.40 1.13 16 5 C -0.13 -2.33 3.52 -27.88 -0.10 -2.43 16 6 C 0.46 11.01 7.27 -10.98 -0.08 10.93 16 7 O -0.58 -15.60 13.81 5.55 0.08 -15.52 16 8 N -0.44 -11.16 2.56 -114.81 -0.29 -11.45 16 9 C -0.31 -8.47 8.98 -14.93 -0.13 -8.60 16 10 H 0.09 2.67 7.70 -52.48 -0.40 2.26 16 11 C 0.03 0.90 4.92 -17.47 -0.09 0.81 16 12 N -0.87 -23.51 11.33 55.50 0.63 -22.88 16 13 Si 0.91 20.66 29.61 -169.99 -5.03 15.62 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 C 0.10 2.08 5.43 -4.04 -0.02 2.06 16 18 C -0.16 -2.97 10.15 37.16 0.38 -2.59 16 19 C -0.06 -0.92 3.76 -104.62 -0.39 -1.32 16 20 C -0.11 -1.48 8.71 -39.58 -0.34 -1.82 16 21 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 22 C -0.10 -1.16 5.88 -104.62 -0.62 -1.78 16 23 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 24 C -0.12 -1.43 9.70 -39.59 -0.38 -1.82 16 25 C -0.11 -1.54 9.67 -39.59 -0.38 -1.92 16 26 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.84 5.88 -51.93 -0.31 1.53 16 30 H 0.05 0.76 7.21 -51.93 -0.37 0.39 16 31 H 0.08 1.43 7.41 -51.93 -0.38 1.05 16 32 H 0.08 1.29 5.98 -51.93 -0.31 0.98 16 33 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.11 2.72 5.34 -51.93 -0.28 2.44 16 35 H 0.05 0.95 6.66 -51.93 -0.35 0.60 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.71 6.60 -51.92 -0.34 0.37 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.12 1.51 7.13 -52.49 -0.37 1.13 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 43 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.12 1.52 7.95 -52.48 -0.42 1.11 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -30.11 357.06 -8.61 -38.72 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.25 Total: 5.46 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -2.12 Total: -15.34 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.34 Total: -34.33 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.08 Total: -15.52 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.11 -8.61 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078090778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.322 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds