Wall clock time and date at job start Tue Mar 31 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47195 * 2 1 4 4 H 1.09000 * 109.47195 * 305.00403 * 3 2 1 5 5 C 1.52998 * 109.47283 * 184.99931 * 3 2 1 6 6 C 1.50706 * 109.46868 * 65.00043 * 5 3 2 7 7 O 1.21289 * 120.00159 * 0.02562 * 6 5 3 8 8 N 1.34774 * 119.99572 * 179.97438 * 6 5 3 9 9 C 1.37105 * 119.99822 * 180.02562 * 8 6 5 10 10 H 1.08007 * 119.99452 * 326.16354 * 9 8 6 11 11 C 1.38946 * 120.00260 * 146.16743 * 9 8 6 12 12 N 1.31417 * 119.99795 * 337.67804 * 11 9 8 13 13 Si 1.86798 * 120.00108 * 157.68355 * 11 9 8 14 14 H 1.48497 * 109.46997 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47022 * 119.99972 * 13 11 9 16 16 H 1.48499 * 109.46753 * 239.99891 * 13 11 9 17 17 C 1.46499 * 120.00670 * 0.02562 * 8 6 5 18 18 C 1.53001 * 109.46958 * 84.74682 * 17 8 6 19 19 C 1.50699 * 109.46849 * 65.00245 * 3 2 1 20 20 C 1.38236 * 119.99951 * 59.72362 * 19 3 2 21 21 C 1.38243 * 119.99670 * 179.78983 * 20 19 3 22 22 C 1.38227 * 120.00171 * 0.44208 * 21 20 19 23 23 C 1.50703 * 120.00420 * 179.83535 * 22 21 20 24 24 C 1.38238 * 119.99874 * 359.81299 * 22 21 20 25 25 C 1.38228 * 120.00188 * 359.97438 * 24 22 21 26 26 H 1.08996 * 109.47034 * 299.99791 * 1 2 3 27 27 H 1.09001 * 109.46940 * 59.99667 * 1 2 3 28 28 H 1.08997 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46871 * 240.00697 * 2 1 3 30 30 H 1.09003 * 109.47370 * 120.00027 * 2 1 3 31 31 H 1.08998 * 109.47310 * 184.99992 * 5 3 2 32 32 H 1.08998 * 109.47120 * 305.00863 * 5 3 2 33 33 H 0.96998 * 119.99699 * 179.97438 * 12 11 9 34 34 H 1.08998 * 109.47428 * 204.75050 * 17 8 6 35 35 H 1.08999 * 109.46749 * 324.75219 * 17 8 6 36 36 H 1.09000 * 109.47389 * 180.02562 * 18 17 8 37 37 H 1.09011 * 109.47034 * 300.00402 * 18 17 8 38 38 H 1.09001 * 109.46971 * 60.00120 * 18 17 8 39 39 H 1.07992 * 120.00269 * 0.02562 * 20 19 3 40 40 H 1.08003 * 119.99478 * 180.28167 * 21 20 19 41 41 H 1.08993 * 109.47051 * 269.98235 * 23 22 21 42 42 H 1.09004 * 109.46423 * 29.98001 * 23 22 21 43 43 H 1.08999 * 109.47292 * 149.97670 * 23 22 21 44 44 H 1.07999 * 119.99830 * 179.97438 * 24 22 21 45 45 H 1.08005 * 120.00075 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 6 3.9589 0.8822 -1.4673 7 8 3.1043 0.5165 -2.2464 8 7 5.2610 0.7868 -1.8017 9 6 5.6196 0.2758 -3.0224 10 1 5.0290 -0.5074 -3.4745 11 6 6.7426 0.7654 -3.6778 12 7 7.2028 1.9619 -3.3884 13 14 7.5983 -0.2770 -4.9703 14 1 6.8890 -1.5742 -5.1091 15 1 7.5834 0.4377 -6.2720 16 1 9.0032 -0.5233 -4.5569 17 6 6.2933 1.2289 -0.8610 18 6 6.6079 0.0976 0.1198 19 6 1.6414 2.1162 1.2877 20 6 2.0721 1.6047 2.4976 21 6 1.7100 2.2252 3.6786 22 6 0.9097 3.3519 3.6502 23 6 0.5118 4.0263 4.9379 24 6 0.4746 3.8604 2.4406 25 6 0.8403 3.2425 1.2595 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 3.9355 2.4655 -0.0366 32 1 3.9954 0.8311 0.6658 33 1 7.9871 2.3035 -3.8457 34 1 7.1962 1.4947 -1.4108 35 1 5.9344 2.0982 -0.3099 36 1 7.3756 0.4266 0.8201 37 1 5.7049 -0.1682 0.6697 38 1 6.9668 -0.7717 -0.4313 39 1 2.6947 0.7225 2.5199 40 1 2.0503 1.8282 4.6236 41 1 -0.4216 3.5956 5.3002 42 1 1.2938 3.8775 5.6825 43 1 0.3756 5.0933 4.7622 44 1 -0.1511 4.7404 2.4185 45 1 0.5000 3.6395 0.3144 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078090778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:45 Heat of formation + Delta-G solvation = -45.673967 kcal Electronic energy + Delta-G solvation = -23412.962852 eV Core-core repulsion = 20200.970893 eV Total energy + Delta-G solvation = -3211.991959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03664 -40.05376 -37.35825 -36.36057 -34.02279 -32.84682 -31.76448 -31.34494 -31.09011 -28.12792 -26.71966 -24.86736 -23.84485 -23.71925 -22.66851 -21.15029 -20.12804 -18.73302 -17.99914 -17.06070 -16.66760 -16.37792 -15.95808 -15.78841 -15.71497 -15.23997 -14.90637 -14.52732 -14.38602 -14.26488 -14.17582 -13.99223 -13.68839 -13.48914 -13.12690 -12.96276 -12.89563 -12.77976 -12.69020 -12.64089 -12.33051 -12.13874 -11.99002 -11.92967 -11.86250 -11.66455 -11.45875 -11.37677 -10.86390 -10.19228 -9.74753 -9.42128 -9.28502 -8.32715 -6.01413 0.49901 0.57701 1.35334 1.40848 1.54593 2.09529 2.30538 2.88862 3.03175 3.13909 3.78562 3.81284 4.10289 4.14544 4.19144 4.22857 4.27732 4.33491 4.38167 4.50722 4.55162 4.63128 4.66972 4.71690 4.82062 4.87392 4.90477 4.90857 4.97991 5.03718 5.05870 5.12616 5.21256 5.27358 5.32499 5.35532 5.41844 5.46882 5.50498 5.59409 5.65785 5.77585 5.86735 6.21055 6.23143 6.57256 7.22177 7.53288 8.13555 8.69529 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.003854 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.848807 B = 7262.535887 C = 7718.655039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C -0.022 4.022 4 H 0.055 0.945 5 C -0.110 4.110 6 C 0.446 3.554 7 O -0.620 6.620 8 N -0.457 5.457 9 C -0.340 4.340 10 H 0.063 0.937 11 C 0.002 3.998 12 N -0.889 5.889 13 Si 0.979 3.021 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.263 1.263 17 C 0.094 3.906 18 C -0.153 4.153 19 C -0.079 4.079 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.101 4.101 23 C -0.110 4.110 24 C -0.125 4.125 25 C -0.128 4.128 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.273 0.727 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.040 0.960 39 H 0.126 0.874 40 H 0.141 0.859 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.137 0.863 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.857 2.546 17.257 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.153 4.153 3 C -0.041 4.041 4 H 0.074 0.926 5 C -0.150 4.150 6 C 0.236 3.764 7 O -0.507 6.507 8 N -0.176 5.176 9 C -0.468 4.468 10 H 0.081 0.919 11 C -0.200 4.200 12 N -0.528 5.528 13 Si 0.802 3.198 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.188 1.188 17 C -0.030 4.030 18 C -0.211 4.211 19 C -0.079 4.079 20 C -0.136 4.136 21 C -0.140 4.140 22 C -0.101 4.101 23 C -0.166 4.166 24 C -0.142 4.142 25 C -0.146 4.146 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.144 0.856 40 H 0.159 0.841 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.155 0.845 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.084 2.497 16.823 18.831 hybrid contribution 0.579 -0.325 -1.333 1.489 sum -7.505 2.172 15.490 17.349 Atomic orbital electron populations 1.21635 0.94971 1.01555 1.01217 1.21600 0.96738 0.95232 1.01722 1.19772 0.93209 0.96714 0.94369 0.92632 1.21590 0.96929 1.01827 0.94604 1.21191 0.82778 0.82190 0.90243 1.90443 1.50292 1.54725 1.55197 1.43835 1.04281 1.55081 1.14381 1.19428 1.11763 1.17973 0.97632 0.91918 1.26033 0.98640 0.95754 0.99607 1.70004 1.24416 1.14917 1.43437 0.85115 0.78447 0.78508 0.77700 1.19666 1.20536 1.18813 1.21663 0.94408 0.96177 0.90717 1.22095 1.01738 0.98643 0.98607 1.19772 0.98008 0.95840 0.94266 1.21119 1.00285 1.00320 0.91877 1.21269 0.98533 0.95852 0.98364 1.20248 0.97619 0.96106 0.96125 1.20806 1.02279 1.00363 0.93191 1.21224 1.00715 1.00609 0.91692 1.21198 0.98691 0.95816 0.98882 0.92233 0.93964 0.92228 0.92882 0.91536 0.90008 0.88325 0.91770 0.89355 0.92045 0.89806 0.92626 0.94063 0.85620 0.84132 0.90406 0.90670 0.90916 0.84534 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.73 71.98 0.70 -3.23 16 2 C -0.12 -3.88 5.08 30.60 0.16 -3.72 16 3 C -0.02 -0.74 1.69 -11.54 -0.02 -0.76 16 4 H 0.06 2.17 7.69 -2.39 -0.02 2.15 16 5 C -0.11 -4.10 3.52 29.85 0.11 -3.99 16 6 C 0.45 22.24 7.27 87.66 0.64 22.87 16 7 O -0.62 -35.35 13.81 -3.06 -0.04 -35.40 16 8 N -0.46 -23.76 2.56 -635.53 -1.63 -25.39 16 9 C -0.34 -19.63 8.98 84.04 0.75 -18.87 16 10 H 0.06 3.89 7.70 -2.91 -0.02 3.87 16 11 C 0.00 0.09 4.92 84.92 0.42 0.51 16 12 N -0.89 -48.56 11.33 21.66 0.25 -48.32 16 13 Si 0.98 42.93 29.61 68.60 2.03 44.96 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 17 C 0.09 4.09 5.43 86.38 0.47 4.56 16 18 C -0.15 -5.32 10.15 71.98 0.73 -4.59 16 19 C -0.08 -2.21 3.76 -19.87 -0.07 -2.28 16 20 C -0.12 -2.88 8.71 22.27 0.19 -2.68 16 21 C -0.12 -2.51 9.70 22.27 0.22 -2.29 16 22 C -0.10 -1.98 5.88 -19.87 -0.12 -2.09 16 23 C -0.11 -1.43 10.01 71.24 0.71 -0.71 16 24 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 25 C -0.13 -3.34 9.67 22.27 0.22 -3.12 16 26 H 0.06 1.56 7.38 -2.39 -0.02 1.54 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 2.22 5.88 -2.39 -0.01 2.20 16 30 H 0.07 1.97 7.21 -2.39 -0.02 1.95 16 31 H 0.08 2.99 7.41 -2.39 -0.02 2.97 16 32 H 0.10 3.22 5.98 -2.39 -0.01 3.21 16 33 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 34 H 0.09 4.31 5.34 -2.39 -0.01 4.30 16 35 H 0.06 2.44 6.66 -2.39 -0.02 2.43 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.05 1.77 6.60 -2.38 -0.02 1.75 16 38 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.13 2.85 7.13 -2.91 -0.02 2.83 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.83 8.09 -2.38 -0.02 0.81 16 43 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.12 3.01 7.95 -2.91 -0.02 2.99 16 Total: -1.00 -67.90 357.06 6.88 -61.02 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.96 Total: 26.01 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 5.31 Total: -22.89 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -1.38 Total: -73.71 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.04 Total: -35.40 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.90 6.88 -61.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078090778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.342 kcal (2) G-P(sol) polarization free energy of solvation -67.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds