Wall clock time and date at job start Tue Mar 31 2020 05:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 H 1.09007 * 109.47238 * 54.57715 * 3 2 1 5 5 C 1.50696 * 109.47450 * 174.57714 * 3 2 1 6 6 H 1.08008 * 119.99834 * 120.00015 * 5 3 2 7 7 C 1.37870 * 120.00325 * 299.72720 * 5 3 2 8 8 N 1.31517 * 119.99723 * 0.27388 * 7 5 3 9 9 Si 1.86802 * 120.00427 * 180.27261 * 7 5 3 10 10 H 1.48503 * 109.46639 * 59.99972 * 9 7 5 11 11 H 1.48501 * 109.47384 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46829 * 300.00433 * 9 7 5 13 13 N 1.46902 * 109.47264 * 294.58345 * 3 2 1 14 14 C 1.46897 * 111.00540 * 154.46167 * 13 3 2 15 15 C 1.50694 * 109.47309 * 174.74048 * 14 13 3 16 16 C 1.37979 * 119.88184 * 259.72576 * 15 14 13 17 17 C 1.38244 * 120.35155 * 179.72321 * 16 15 14 18 18 C 1.38394 * 119.76308 * 0.73944 * 17 16 15 19 19 C 1.37698 * 119.98036 * 359.72246 * 18 17 16 20 20 C 1.38924 * 120.78276 * 359.63110 * 19 18 17 21 21 O 1.36130 * 111.21088 * 181.02917 * 20 19 18 22 22 C 1.43781 * 109.20744 * 340.65002 * 21 20 19 23 23 C 1.53006 * 110.75194 * 269.57619 * 22 21 20 24 24 C 1.53003 * 110.90877 * 146.29498 * 22 21 20 25 25 C 1.51639 * 132.17346 * 179.11207 * 19 18 17 26 26 H 1.09001 * 109.46865 * 185.84972 * 1 2 3 27 27 H 1.08996 * 109.47139 * 305.85062 * 1 2 3 28 28 H 1.09002 * 109.47117 * 65.84774 * 1 2 3 29 29 H 1.09005 * 109.47658 * 240.00144 * 2 1 3 30 30 H 1.08996 * 109.47509 * 120.00203 * 2 1 3 31 31 H 0.97005 * 120.00020 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99942 * 30.50502 * 13 3 2 33 33 H 1.09001 * 109.47042 * 294.74735 * 14 13 3 34 34 H 1.09002 * 109.46779 * 54.73719 * 14 13 3 35 35 H 1.07996 * 119.82448 * 0.02562 * 16 15 14 36 36 H 1.07996 * 120.11614 * 180.43956 * 17 16 15 37 37 H 1.08006 * 120.00760 * 179.70441 * 18 17 16 38 38 H 1.08991 * 109.47214 * 173.35953 * 23 22 21 39 39 H 1.09005 * 109.46793 * 293.36455 * 23 22 21 40 40 H 1.08999 * 109.46506 * 53.36122 * 23 22 21 41 41 H 1.08997 * 109.46731 * 306.54602 * 24 22 21 42 42 H 1.08997 * 109.47160 * 66.54475 * 24 22 21 43 43 H 1.09003 * 109.47030 * 186.54736 * 24 22 21 44 44 H 1.09004 * 110.93855 * 313.76996 * 25 19 18 45 45 H 1.08997 * 110.94100 * 77.45186 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9836 0.8375 5 6 3.5410 1.4446 0.1343 6 1 4.1516 1.8873 -0.6388 7 6 4.1344 0.8865 1.2465 8 7 3.3908 0.3474 2.1878 9 14 5.9947 0.8960 1.4166 10 1 6.4848 2.2978 1.4138 11 1 6.3785 0.2394 2.6920 12 1 6.5994 0.1579 0.2788 13 7 1.6600 2.0963 -1.2594 14 6 1.5676 3.5525 -1.0898 15 6 1.3040 4.1981 -2.4257 16 6 2.3416 4.7795 -3.1250 17 6 2.1118 5.3694 -4.3539 18 6 0.8308 5.3898 -4.8774 19 6 -0.2079 4.8185 -4.1769 20 6 0.0130 4.2109 -2.9472 21 8 -1.1392 3.6935 -2.4394 22 6 -2.2625 4.3158 -3.0860 23 6 -2.7071 5.5629 -2.3190 24 6 -3.4233 3.3298 -3.2328 25 6 -1.6906 4.6993 -4.4715 26 1 -0.3633 -1.0223 0.1047 27 1 -0.3633 0.6018 0.8329 28 1 -0.3633 0.4205 -0.9377 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8083 -0.0456 2.9703 32 1 0.7953 1.7182 -1.6166 33 1 0.7526 3.7875 -0.4054 34 1 2.5050 3.9309 -0.6820 35 1 3.3396 4.7693 -2.7124 36 1 2.9280 5.8171 -4.9013 37 1 0.6459 5.8538 -5.8350 38 1 -3.4789 6.0826 -2.8866 39 1 -3.1057 5.2692 -1.3479 40 1 -1.8531 6.2251 -2.1761 41 1 -3.0716 2.4262 -3.7306 42 1 -3.8097 3.0742 -2.2462 43 1 -4.2153 3.7867 -3.8261 44 1 -2.0981 5.6516 -4.8109 45 1 -1.8807 3.9133 -5.2023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080509194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:31 Heat of formation + Delta-G solvation = -19.369597 kcal Electronic energy + Delta-G solvation = -23616.390631 eV Core-core repulsion = 20405.539314 eV Total energy + Delta-G solvation = -3210.851316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23366 -37.74649 -36.14207 -33.94688 -32.76742 -31.62319 -30.88884 -29.44383 -27.62816 -26.64153 -26.41732 -24.34325 -22.50251 -21.89702 -20.59821 -20.34545 -19.41330 -17.03383 -16.25413 -16.02180 -15.82458 -15.27857 -14.71997 -14.40097 -14.19873 -13.87381 -13.76763 -13.23168 -13.06522 -12.83841 -12.65735 -12.55922 -12.24407 -12.16505 -12.09495 -11.94637 -11.68440 -11.57456 -11.15587 -11.06309 -10.98592 -10.78833 -10.69809 -10.59649 -10.41053 -9.88816 -9.60294 -9.53876 -9.04192 -8.46750 -8.27766 -7.88082 -7.10056 -5.89929 -3.93958 1.52175 1.60611 3.31293 3.38098 3.42030 3.45553 3.89912 4.37579 4.46454 4.50386 4.68002 4.89679 5.00412 5.24717 5.27598 5.33586 5.37975 5.39098 5.48909 5.55430 5.61192 5.65390 5.70562 5.81582 5.91516 5.92760 6.04334 6.12883 6.23522 6.27175 6.29721 6.50225 6.55468 6.57615 6.65238 6.82199 6.94666 6.98489 7.17252 7.28228 7.43700 7.58809 7.85824 7.99212 8.39548 8.47798 8.86327 9.13743 9.70630 11.15390 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.004573 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.015997 B = 6121.623157 C = 7210.879052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.679 5.679 14 C 0.108 3.892 15 C -0.079 4.079 16 C -0.070 4.070 17 C -0.151 4.151 18 C -0.083 4.083 19 C -0.181 4.181 20 C 0.111 3.889 21 O -0.291 6.291 22 C 0.099 3.901 23 C -0.161 4.161 24 C -0.141 4.141 25 C -0.097 4.097 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.099 0.901 31 H 0.259 0.741 32 H 0.320 0.680 33 H 0.024 0.976 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.923 10.219 -12.409 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.021 4.021 15 C -0.080 4.080 16 C -0.088 4.088 17 C -0.169 4.169 18 C -0.101 4.101 19 C -0.181 4.181 20 C 0.065 3.935 21 O -0.205 6.205 22 C 0.061 3.939 23 C -0.219 4.219 24 C -0.198 4.198 25 C -0.134 4.134 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.117 0.883 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.307 9.965 -12.265 19.431 hybrid contribution 0.159 0.106 0.525 0.558 sum -11.148 10.071 -11.740 19.066 Atomic orbital electron populations 1.21866 0.99569 0.99516 0.99700 1.21748 0.91265 1.00316 1.02924 1.19158 0.95351 0.89971 0.84350 0.98150 1.21185 0.91280 1.36491 1.04066 0.92130 1.24957 0.98000 0.95730 0.95863 1.69874 1.34714 1.39617 1.09518 0.86618 0.85917 0.78091 0.77071 1.20458 1.21523 1.20345 1.60747 1.36390 1.01085 1.32845 1.20690 1.00562 0.90461 0.90391 1.19415 0.89349 1.00733 0.98548 1.20864 0.98345 0.95645 0.93989 1.20973 0.96308 1.02849 0.96772 1.20164 0.91691 0.99170 0.99063 1.20656 0.95695 1.05564 0.96230 1.19379 0.87767 0.94599 0.91709 1.86932 1.12249 1.58994 1.62354 1.22693 0.87082 0.93332 0.90751 1.22188 1.01998 0.96634 1.01056 1.21823 0.95900 0.98856 1.03208 1.21820 0.91578 1.02760 0.97264 0.94523 0.93962 0.94481 0.94132 0.88321 0.93110 0.86283 0.95808 0.90003 0.85009 0.85877 0.86509 0.91041 0.91353 0.91836 0.91300 0.91275 0.90642 0.89618 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.64 37.15 0.36 -2.73 16 2 C -0.12 -3.05 5.36 -26.73 -0.14 -3.20 16 3 C 0.22 5.66 2.02 -68.87 -0.14 5.52 16 4 H 0.00 0.02 7.85 -51.93 -0.41 -0.38 16 5 C -0.49 -13.82 8.56 -34.44 -0.29 -14.11 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.05 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.90 -25.96 11.30 55.43 0.63 -25.33 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 N -0.68 -15.46 6.26 -109.22 -0.68 -16.14 16 14 C 0.11 2.22 5.55 -4.98 -0.03 2.20 16 15 C -0.08 -1.41 5.46 -104.35 -0.57 -1.98 16 16 C -0.07 -1.10 9.63 -39.67 -0.38 -1.48 16 17 C -0.15 -2.00 10.07 -39.52 -0.40 -2.40 16 18 C -0.08 -1.05 10.03 -39.72 -0.40 -1.45 16 19 C -0.18 -2.51 6.27 -104.10 -0.65 -3.16 16 20 C 0.11 1.83 6.62 -38.96 -0.26 1.58 16 21 O -0.29 -4.70 10.48 -20.15 -0.21 -4.91 16 22 C 0.10 1.16 1.26 -89.72 -0.11 1.05 16 23 C -0.16 -1.64 8.86 37.16 0.33 -1.32 16 24 C -0.14 -1.32 8.95 37.16 0.33 -0.99 16 25 C -0.10 -1.05 6.18 -26.52 -0.16 -1.22 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.71 6.65 -51.93 -0.35 0.37 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.10 2.69 5.96 -51.93 -0.31 2.38 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.32 7.03 6.63 -39.29 -0.26 6.76 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.75 7.78 -51.93 -0.40 1.35 16 35 H 0.13 1.99 8.02 -52.49 -0.42 1.57 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.72 8.07 -51.93 -0.42 0.31 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.09 0.74 7.92 -51.93 -0.41 0.33 16 45 H 0.09 0.87 7.92 -51.93 -0.41 0.46 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -30.32 360.96 -10.05 -40.37 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.58 Total: 6.06 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.62 Total: -22.25 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.06 Total: -41.47 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.21 Total: -4.91 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.32 -10.05 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080509194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.005 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds