Wall clock time and date at job start Tue Mar 31 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47325 * 2 1 4 4 H 1.09007 * 109.47238 * 54.57715 * 3 2 1 5 5 C 1.50696 * 109.47450 * 174.57714 * 3 2 1 6 6 H 1.08008 * 119.99834 * 120.00015 * 5 3 2 7 7 C 1.37870 * 120.00325 * 299.72720 * 5 3 2 8 8 N 1.31517 * 119.99723 * 0.27388 * 7 5 3 9 9 Si 1.86802 * 120.00427 * 180.27261 * 7 5 3 10 10 H 1.48503 * 109.46639 * 59.99972 * 9 7 5 11 11 H 1.48501 * 109.47384 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46829 * 300.00433 * 9 7 5 13 13 N 1.46902 * 109.47264 * 294.58345 * 3 2 1 14 14 C 1.46897 * 111.00540 * 154.46167 * 13 3 2 15 15 C 1.50694 * 109.47309 * 174.74048 * 14 13 3 16 16 C 1.37979 * 119.88184 * 259.72576 * 15 14 13 17 17 C 1.38244 * 120.35155 * 179.72321 * 16 15 14 18 18 C 1.38394 * 119.76308 * 0.73944 * 17 16 15 19 19 C 1.37698 * 119.98036 * 359.72246 * 18 17 16 20 20 C 1.38924 * 120.78276 * 359.63110 * 19 18 17 21 21 O 1.36130 * 111.21088 * 181.02917 * 20 19 18 22 22 C 1.43781 * 109.20744 * 340.65002 * 21 20 19 23 23 C 1.53006 * 110.75194 * 269.57619 * 22 21 20 24 24 C 1.53003 * 110.90877 * 146.29498 * 22 21 20 25 25 C 1.51639 * 132.17346 * 179.11207 * 19 18 17 26 26 H 1.09001 * 109.46865 * 185.84972 * 1 2 3 27 27 H 1.08996 * 109.47139 * 305.85062 * 1 2 3 28 28 H 1.09002 * 109.47117 * 65.84774 * 1 2 3 29 29 H 1.09005 * 109.47658 * 240.00144 * 2 1 3 30 30 H 1.08996 * 109.47509 * 120.00203 * 2 1 3 31 31 H 0.97005 * 120.00020 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99942 * 30.50502 * 13 3 2 33 33 H 1.09001 * 109.47042 * 294.74735 * 14 13 3 34 34 H 1.09002 * 109.46779 * 54.73719 * 14 13 3 35 35 H 1.07996 * 119.82448 * 0.02562 * 16 15 14 36 36 H 1.07996 * 120.11614 * 180.43956 * 17 16 15 37 37 H 1.08006 * 120.00760 * 179.70441 * 18 17 16 38 38 H 1.08991 * 109.47214 * 173.35953 * 23 22 21 39 39 H 1.09005 * 109.46793 * 293.36455 * 23 22 21 40 40 H 1.08999 * 109.46506 * 53.36122 * 23 22 21 41 41 H 1.08997 * 109.46731 * 306.54602 * 24 22 21 42 42 H 1.08997 * 109.47160 * 66.54475 * 24 22 21 43 43 H 1.09003 * 109.47030 * 186.54736 * 24 22 21 44 44 H 1.09004 * 110.93855 * 313.76996 * 25 19 18 45 45 H 1.08997 * 110.94100 * 77.45186 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9836 0.8375 5 6 3.5410 1.4446 0.1343 6 1 4.1516 1.8873 -0.6388 7 6 4.1344 0.8865 1.2465 8 7 3.3908 0.3474 2.1878 9 14 5.9947 0.8960 1.4166 10 1 6.4848 2.2978 1.4138 11 1 6.3785 0.2394 2.6920 12 1 6.5994 0.1579 0.2788 13 7 1.6600 2.0963 -1.2594 14 6 1.5676 3.5525 -1.0898 15 6 1.3040 4.1981 -2.4257 16 6 2.3416 4.7795 -3.1250 17 6 2.1118 5.3694 -4.3539 18 6 0.8308 5.3898 -4.8774 19 6 -0.2079 4.8185 -4.1769 20 6 0.0130 4.2109 -2.9472 21 8 -1.1392 3.6935 -2.4394 22 6 -2.2625 4.3158 -3.0860 23 6 -2.7071 5.5629 -2.3190 24 6 -3.4233 3.3298 -3.2328 25 6 -1.6906 4.6993 -4.4715 26 1 -0.3633 -1.0223 0.1047 27 1 -0.3633 0.6018 0.8329 28 1 -0.3633 0.4205 -0.9377 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8083 -0.0456 2.9703 32 1 0.7953 1.7182 -1.6166 33 1 0.7526 3.7875 -0.4054 34 1 2.5050 3.9309 -0.6820 35 1 3.3396 4.7693 -2.7124 36 1 2.9280 5.8171 -4.9013 37 1 0.6459 5.8538 -5.8350 38 1 -3.4789 6.0826 -2.8866 39 1 -3.1057 5.2692 -1.3479 40 1 -1.8531 6.2251 -2.1761 41 1 -3.0716 2.4262 -3.7306 42 1 -3.8097 3.0742 -2.2462 43 1 -4.2153 3.7867 -3.8261 44 1 -2.0981 5.6516 -4.8109 45 1 -1.8807 3.9133 -5.2023 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080509194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:30 Heat of formation + Delta-G solvation = -36.731160 kcal Electronic energy + Delta-G solvation = -23617.143485 eV Core-core repulsion = 20405.539314 eV Total energy + Delta-G solvation = -3211.604170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.27773 -38.97571 -37.91720 -35.16605 -34.34499 -33.38271 -32.11162 -30.87148 -28.55670 -28.37624 -27.42001 -26.03306 -24.36026 -23.01613 -21.71523 -21.53399 -21.32541 -18.40787 -18.07521 -17.10423 -16.95876 -16.82378 -16.34767 -15.93690 -15.69779 -15.28938 -14.82725 -14.65662 -14.30343 -14.18442 -14.02393 -13.73246 -13.54051 -13.42263 -13.21826 -13.06395 -12.92536 -12.90145 -12.76309 -12.62213 -12.54827 -12.43655 -12.02351 -11.96801 -11.74346 -11.62285 -11.56559 -11.28788 -11.09247 -10.44073 -9.65048 -9.08442 -8.95696 -8.06840 -6.19630 0.39360 0.47248 1.41362 1.43704 1.51418 2.33249 2.43897 2.76897 3.17863 3.47904 3.57161 3.75147 3.88434 4.00202 4.05659 4.08512 4.32731 4.38920 4.44573 4.52000 4.56035 4.63742 4.66102 4.67117 4.71988 4.75785 4.79941 4.83216 4.89532 5.04812 5.05914 5.10750 5.18381 5.24877 5.28426 5.31356 5.47782 5.52582 5.55018 5.67478 5.72926 5.84962 5.86459 6.31968 6.36082 6.45908 6.91447 6.93320 7.49110 8.96738 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018749 B = 0.004573 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.015997 B = 6121.623157 C = 7210.879052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.225 3.775 4 H -0.037 1.037 5 C -0.513 4.513 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.960 3.040 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.119 3.881 15 C -0.112 4.112 16 C -0.086 4.086 17 C -0.145 4.145 18 C -0.075 4.075 19 C -0.181 4.181 20 C 0.093 3.907 21 O -0.323 6.323 22 C 0.086 3.914 23 C -0.158 4.158 24 C -0.138 4.138 25 C -0.090 4.090 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.261 0.739 32 H 0.324 0.676 33 H 0.007 0.993 34 H 0.061 0.939 35 H 0.126 0.874 36 H 0.154 0.846 37 H 0.156 0.844 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 11.281 -15.140 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C 0.117 3.883 4 H -0.019 1.019 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.785 3.215 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.198 1.198 13 N -0.307 5.307 14 C -0.010 4.010 15 C -0.113 4.113 16 C -0.105 4.105 17 C -0.163 4.163 18 C -0.093 4.093 19 C -0.182 4.182 20 C 0.047 3.953 21 O -0.238 6.238 22 C 0.049 3.951 23 C -0.216 4.216 24 C -0.195 4.195 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.025 0.975 34 H 0.079 0.921 35 H 0.144 0.856 36 H 0.172 0.828 37 H 0.174 0.826 38 H 0.123 0.877 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.134 0.866 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.231 11.036 -15.009 22.286 hybrid contribution 0.384 -0.175 1.346 1.411 sum -11.847 10.861 -13.663 21.095 Atomic orbital electron populations 1.21713 0.96516 1.01062 1.00059 1.21578 0.94004 0.98891 1.01241 1.18964 0.94367 0.90619 0.84381 1.01928 1.21405 0.92435 1.36989 1.04303 0.93135 1.25721 1.02618 0.95158 0.95380 1.70009 1.36471 1.39833 1.09802 0.85591 0.80313 0.78320 0.77258 1.19831 1.20783 1.19760 1.60694 1.36615 1.02436 1.30981 1.20499 0.98747 0.89215 0.92538 1.19248 0.91195 1.03110 0.97731 1.20957 0.97695 0.96482 0.95335 1.21316 0.97829 1.01655 0.95516 1.20637 0.90842 0.97706 1.00069 1.21106 0.97793 1.04317 0.95014 1.19521 0.87407 0.95350 0.93030 1.86898 1.13286 1.60009 1.63598 1.23113 0.86478 0.94208 0.91296 1.22194 1.02139 0.96007 1.01215 1.21867 0.95843 0.98372 1.03386 1.21910 0.89222 1.04701 0.96803 0.92043 0.94761 0.93173 0.94540 0.91038 0.93005 0.85827 0.97456 0.92059 0.85562 0.82794 0.82632 0.87722 0.92125 0.93570 0.92028 0.91965 0.87318 0.86608 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 9.64 71.98 0.69 -4.99 16 2 C -0.12 -6.03 5.36 30.59 0.16 -5.87 16 3 C 0.22 12.24 2.02 44.17 0.09 12.33 16 4 H -0.04 -2.24 7.85 -2.38 -0.02 -2.26 16 5 C -0.51 -30.02 8.56 25.60 0.22 -29.80 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.53 5.29 84.65 0.45 0.98 16 8 N -0.92 -54.84 11.30 21.44 0.24 -54.60 16 9 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 13 N -0.68 -32.37 6.26 -499.47 -3.12 -35.50 16 14 C 0.12 5.26 5.55 85.56 0.47 5.74 16 15 C -0.11 -4.12 5.46 -19.69 -0.11 -4.23 16 16 C -0.09 -2.74 9.63 22.21 0.21 -2.53 16 17 C -0.15 -3.53 10.07 22.31 0.22 -3.31 16 18 C -0.07 -1.64 10.03 22.18 0.22 -1.42 16 19 C -0.18 -4.63 6.27 -19.53 -0.12 -4.75 16 20 C 0.09 3.06 6.62 22.68 0.15 3.21 16 21 O -0.32 -10.53 10.48 -95.03 -1.00 -11.53 16 22 C 0.09 1.86 1.26 -10.21 -0.01 1.85 16 23 C -0.16 -2.97 8.86 71.98 0.64 -2.34 16 24 C -0.14 -2.30 8.95 71.98 0.64 -1.66 16 25 C -0.09 -1.64 6.18 30.73 0.19 -1.45 16 26 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 27 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.94 6.65 -2.39 -0.02 1.93 16 29 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 4.04 5.96 -2.39 -0.01 4.03 16 31 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 32 H 0.32 14.81 6.63 -89.69 -0.59 14.22 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.06 2.87 7.78 -2.39 -0.02 2.85 16 35 H 0.13 3.99 8.02 -2.91 -0.02 3.96 16 36 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.05 1.02 8.07 -2.39 -0.02 1.00 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.12 1.44 7.92 -2.39 -0.02 1.42 16 45 H 0.10 1.61 7.92 -2.39 -0.02 1.59 16 Total: -1.00 -69.03 360.96 2.64 -66.39 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.36 Total: 25.99 kcal Atomic # 6 Polarization: -42.36 SS G_CDS: 4.13 Total: -38.23 kcal Atomic # 7 Polarization: -87.22 SS G_CDS: -2.88 Total: -90.10 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -1.00 Total: -11.53 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.03 2.64 -66.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080509194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.660 kcal (2) G-P(sol) polarization free energy of solvation -69.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds