Wall clock time and date at job start Tue Mar 31 2020 05:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46843 * 2 1 4 4 H 1.09002 * 109.47124 * 305.64926 * 3 2 1 5 5 C 1.50704 * 109.47083 * 185.65491 * 3 2 1 6 6 H 1.08001 * 119.99888 * 239.99489 * 5 3 2 7 7 C 1.37876 * 119.99821 * 59.99375 * 5 3 2 8 8 N 1.31510 * 120.00292 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99578 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47162 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46975 * 120.00354 * 9 7 5 12 12 H 1.48507 * 109.47169 * 240.00083 * 9 7 5 13 13 N 1.46897 * 109.47487 * 65.65327 * 3 2 1 14 14 C 1.46904 * 111.00155 * 205.58154 * 13 3 2 15 15 C 1.50691 * 109.47355 * 183.76380 * 14 13 3 16 16 C 1.37976 * 119.88053 * 260.00089 * 15 14 13 17 17 C 1.38244 * 120.34768 * 180.27760 * 16 15 14 18 18 C 1.38389 * 119.77171 * 359.63035 * 17 16 15 19 19 C 1.37692 * 119.97521 * 0.53383 * 18 17 16 20 20 C 1.38923 * 120.78533 * 359.36276 * 19 18 17 21 21 O 1.36136 * 111.21354 * 181.03427 * 20 19 18 22 22 C 1.43776 * 109.20341 * 340.65242 * 21 20 19 23 23 C 1.52992 * 110.75338 * 269.57197 * 22 21 20 24 24 C 1.53005 * 110.90156 * 146.29235 * 22 21 20 25 25 C 1.51646 * 132.17493 * 178.85529 * 19 18 17 26 26 H 1.08999 * 109.46964 * 175.53814 * 1 2 3 27 27 H 1.08998 * 109.47297 * 295.53533 * 1 2 3 28 28 H 1.09002 * 109.46944 * 55.54300 * 1 2 3 29 29 H 1.08996 * 109.47928 * 239.99465 * 2 1 3 30 30 H 1.09002 * 109.46973 * 119.99200 * 2 1 3 31 31 H 0.97007 * 120.00066 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99850 * 329.53174 * 13 3 2 33 33 H 1.09006 * 109.46934 * 63.76203 * 14 13 3 34 34 H 1.08997 * 109.46879 * 303.76641 * 14 13 3 35 35 H 1.07999 * 119.83002 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.11231 * 179.90806 * 17 16 15 37 37 H 1.07998 * 120.01464 * 180.25085 * 18 17 16 38 38 H 1.08999 * 109.47385 * 173.36630 * 23 22 21 39 39 H 1.09005 * 109.47562 * 293.36485 * 23 22 21 40 40 H 1.09002 * 109.47198 * 53.36946 * 23 22 21 41 41 H 1.08992 * 109.47682 * 306.54716 * 24 22 21 42 42 H 1.09004 * 109.47204 * 66.55192 * 24 22 21 43 43 H 1.09007 * 109.47074 * 186.53998 * 24 22 21 44 44 H 1.08996 * 110.93844 * 313.76614 * 25 19 18 45 45 H 1.09005 * 110.93348 * 77.44146 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1400 6 1 4.1541 1.8866 0.6312 7 6 4.1299 0.8831 -1.2526 8 7 3.3827 0.3457 -2.1920 9 14 5.9899 0.8855 -1.4258 10 1 6.5964 1.5452 -0.2417 11 1 6.4802 -0.5132 -1.5179 12 1 6.3717 1.6257 -2.6553 13 7 1.6649 2.0946 1.2618 14 6 1.5707 3.5510 1.0941 15 6 1.2758 4.1919 2.4257 16 6 -0.0138 4.5728 2.7346 17 6 -0.2943 5.1668 3.9510 18 6 0.7234 5.3730 4.8659 19 6 2.0117 4.9968 4.5583 20 6 2.3056 4.3971 3.3401 21 8 3.6281 4.0866 3.2503 22 6 4.3625 4.8628 4.2123 23 6 4.8257 6.1865 3.6009 24 6 5.5546 4.0724 4.7557 25 6 3.3156 5.1092 5.3243 26 1 -0.3633 -1.0246 -0.0799 27 1 -0.3634 0.4430 0.9273 28 1 -0.3633 0.5815 -0.8474 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.7974 -0.0492 -2.9750 32 1 0.8019 1.7156 1.6220 33 1 0.7697 3.7850 0.3928 34 1 2.5152 3.9340 0.7077 35 1 -0.8076 4.4105 2.0205 36 1 -1.3049 5.4648 4.1883 37 1 0.5080 5.8331 5.8190 38 1 5.2754 6.8071 4.3760 39 1 5.5616 5.9889 2.8213 40 1 3.9704 6.7066 3.1697 41 1 5.2104 3.1101 5.1343 42 1 6.2781 3.9108 3.9566 43 1 6.0248 4.6336 5.5633 44 1 3.4305 6.1044 5.7537 45 1 3.3806 4.3433 6.0972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080509195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:33 Heat of formation + Delta-G solvation = -17.431460 kcal Electronic energy + Delta-G solvation = -23726.725485 eV Core-core repulsion = 20515.958212 eV Total energy + Delta-G solvation = -3210.767272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10895 -37.72412 -36.13112 -33.80776 -32.74187 -31.58538 -30.84223 -29.43589 -27.46219 -26.56768 -26.41955 -24.31528 -22.48731 -21.88345 -20.46282 -20.26256 -19.44792 -16.97870 -16.20007 -16.00928 -15.69170 -15.14014 -14.74753 -14.48596 -13.94663 -13.79303 -13.62747 -13.41805 -12.88329 -12.73291 -12.62758 -12.42433 -12.31537 -12.08357 -11.99103 -11.89452 -11.65399 -11.51118 -11.16695 -11.00908 -10.84332 -10.79423 -10.61446 -10.52825 -10.39773 -9.86859 -9.61821 -9.54050 -8.98483 -8.49498 -8.26335 -7.78302 -7.09273 -5.88030 -3.90574 1.50616 1.65099 3.36611 3.44133 3.48073 3.51080 3.91285 4.48791 4.53281 4.58071 4.83085 5.00074 5.06766 5.18009 5.34522 5.40530 5.46587 5.49177 5.59186 5.61550 5.66516 5.76065 5.78553 5.83306 5.95721 6.07642 6.13521 6.21496 6.21738 6.22728 6.27102 6.46792 6.57783 6.62435 6.65349 6.84605 6.90889 6.96125 7.15126 7.27464 7.54346 7.60006 7.86023 8.03773 8.39974 8.48890 8.87166 9.19673 9.73891 11.17589 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.005733 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.144379 B = 4882.635744 C = 6443.686787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.000 1.000 5 C -0.485 4.485 6 H 0.064 0.936 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.676 5.676 14 C 0.110 3.890 15 C -0.090 4.090 16 C -0.086 4.086 17 C -0.156 4.156 18 C -0.080 4.080 19 C -0.185 4.185 20 C 0.140 3.860 21 O -0.271 6.271 22 C 0.096 3.904 23 C -0.161 4.161 24 C -0.140 4.140 25 C -0.097 4.097 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.099 0.901 30 H 0.040 0.960 31 H 0.257 0.743 32 H 0.315 0.685 33 H 0.022 0.978 34 H 0.082 0.918 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 10.855 14.002 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.112 3.888 4 H 0.018 0.982 5 C -0.524 4.524 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.307 5.307 14 C -0.019 4.019 15 C -0.092 4.092 16 C -0.104 4.104 17 C -0.174 4.174 18 C -0.098 4.098 19 C -0.186 4.186 20 C 0.094 3.906 21 O -0.184 6.184 22 C 0.058 3.942 23 C -0.218 4.218 24 C -0.197 4.197 25 C -0.134 4.134 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.132 0.868 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.219 10.622 13.900 17.634 hybrid contribution 0.055 0.084 -0.580 0.588 sum -2.165 10.706 13.320 17.226 Atomic orbital electron populations 1.21878 0.99669 0.99613 0.99533 1.21761 0.91179 1.00389 1.03030 1.19170 0.95583 0.89901 0.84179 0.98194 1.21304 0.91324 1.35698 1.04034 0.91743 1.24953 0.97939 0.95863 0.95942 1.69887 1.34443 1.40069 1.09617 0.86524 0.86139 0.77490 0.77779 1.19744 1.21240 1.21352 1.60692 1.36185 1.01095 1.32762 1.20678 1.00684 0.90343 0.90183 1.19412 0.91035 1.02129 0.96579 1.20808 0.94980 0.97752 0.96896 1.20878 0.98686 1.03238 0.94643 1.20147 0.90900 0.99629 0.99126 1.20755 0.95475 1.06526 0.95862 1.19284 0.84953 0.93741 0.92672 1.87122 1.14788 1.58898 1.57620 1.22713 0.92726 0.91641 0.87128 1.22185 1.02312 0.95652 1.01681 1.21808 0.96258 1.00398 1.01270 1.21831 0.90825 1.03004 0.97750 0.94450 0.94625 0.93924 0.88238 0.94090 0.93302 0.86773 0.96025 0.89969 0.85729 0.86067 0.86542 0.91190 0.91171 0.91974 0.91273 0.91114 0.90865 0.89697 0.89479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.67 37.16 0.36 -2.62 16 2 C -0.13 -3.04 5.36 -26.73 -0.14 -3.18 16 3 C 0.22 5.62 2.02 -68.86 -0.14 5.48 16 4 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 16 5 C -0.48 -13.82 8.58 -34.44 -0.30 -14.12 16 6 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -26.15 11.29 55.43 0.63 -25.52 16 9 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.68 -15.21 6.26 -109.22 -0.68 -15.90 16 14 C 0.11 2.25 5.54 -4.98 -0.03 2.23 16 15 C -0.09 -1.60 5.45 -104.35 -0.57 -2.17 16 16 C -0.09 -1.26 9.63 -39.67 -0.38 -1.64 16 17 C -0.16 -1.99 10.07 -39.52 -0.40 -2.38 16 18 C -0.08 -1.02 10.03 -39.73 -0.40 -1.42 16 19 C -0.19 -2.69 6.27 -104.10 -0.65 -3.34 16 20 C 0.14 2.47 6.62 -38.95 -0.26 2.21 16 21 O -0.27 -5.06 10.48 -20.17 -0.21 -5.27 16 22 C 0.10 1.30 1.26 -89.73 -0.11 1.19 16 23 C -0.16 -1.91 8.86 37.15 0.33 -1.58 16 24 C -0.14 -1.65 8.95 37.16 0.33 -1.31 16 25 C -0.10 -1.16 6.18 -26.52 -0.16 -1.32 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.64 6.61 -51.93 -0.34 0.30 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 2.70 5.94 -51.93 -0.31 2.39 16 30 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 32 H 0.32 6.56 6.61 -39.29 -0.26 6.30 16 33 H 0.02 0.42 7.98 -51.93 -0.41 0.01 16 34 H 0.08 1.88 7.96 -51.93 -0.41 1.46 16 35 H 0.12 1.62 8.02 -52.49 -0.42 1.19 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 45 H 0.09 0.97 7.93 -51.93 -0.41 0.56 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -30.90 360.91 -10.05 -40.95 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -7.58 Total: 5.78 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.61 Total: -22.58 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: -0.06 Total: -41.42 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.21 Total: -5.27 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.90 -10.05 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080509195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.516 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds