Wall clock time and date at job start Tue Mar 31 2020 05:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46843 * 2 1 4 4 H 1.09002 * 109.47124 * 305.64926 * 3 2 1 5 5 C 1.50704 * 109.47083 * 185.65491 * 3 2 1 6 6 H 1.08001 * 119.99888 * 239.99489 * 5 3 2 7 7 C 1.37876 * 119.99821 * 59.99375 * 5 3 2 8 8 N 1.31510 * 120.00292 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99578 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47162 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46975 * 120.00354 * 9 7 5 12 12 H 1.48507 * 109.47169 * 240.00083 * 9 7 5 13 13 N 1.46897 * 109.47487 * 65.65327 * 3 2 1 14 14 C 1.46904 * 111.00155 * 205.58154 * 13 3 2 15 15 C 1.50691 * 109.47355 * 183.76380 * 14 13 3 16 16 C 1.37976 * 119.88053 * 260.00089 * 15 14 13 17 17 C 1.38244 * 120.34768 * 180.27760 * 16 15 14 18 18 C 1.38389 * 119.77171 * 359.63035 * 17 16 15 19 19 C 1.37692 * 119.97521 * 0.53383 * 18 17 16 20 20 C 1.38923 * 120.78533 * 359.36276 * 19 18 17 21 21 O 1.36136 * 111.21354 * 181.03427 * 20 19 18 22 22 C 1.43776 * 109.20341 * 340.65242 * 21 20 19 23 23 C 1.52992 * 110.75338 * 269.57197 * 22 21 20 24 24 C 1.53005 * 110.90156 * 146.29235 * 22 21 20 25 25 C 1.51646 * 132.17493 * 178.85529 * 19 18 17 26 26 H 1.08999 * 109.46964 * 175.53814 * 1 2 3 27 27 H 1.08998 * 109.47297 * 295.53533 * 1 2 3 28 28 H 1.09002 * 109.46944 * 55.54300 * 1 2 3 29 29 H 1.08996 * 109.47928 * 239.99465 * 2 1 3 30 30 H 1.09002 * 109.46973 * 119.99200 * 2 1 3 31 31 H 0.97007 * 120.00066 * 179.97438 * 8 7 5 32 32 H 1.00904 * 110.99850 * 329.53174 * 13 3 2 33 33 H 1.09006 * 109.46934 * 63.76203 * 14 13 3 34 34 H 1.08997 * 109.46879 * 303.76641 * 14 13 3 35 35 H 1.07999 * 119.83002 * 359.97438 * 16 15 14 36 36 H 1.08003 * 120.11231 * 179.90806 * 17 16 15 37 37 H 1.07998 * 120.01464 * 180.25085 * 18 17 16 38 38 H 1.08999 * 109.47385 * 173.36630 * 23 22 21 39 39 H 1.09005 * 109.47562 * 293.36485 * 23 22 21 40 40 H 1.09002 * 109.47198 * 53.36946 * 23 22 21 41 41 H 1.08992 * 109.47682 * 306.54716 * 24 22 21 42 42 H 1.09004 * 109.47204 * 66.55192 * 24 22 21 43 43 H 1.09007 * 109.47074 * 186.53998 * 24 22 21 44 44 H 1.08996 * 110.93844 * 313.76614 * 25 19 18 45 45 H 1.09005 * 110.93348 * 77.44146 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5963 1.9847 -0.8351 5 6 3.5405 1.4449 -0.1400 6 1 4.1541 1.8866 0.6312 7 6 4.1299 0.8831 -1.2526 8 7 3.3827 0.3457 -2.1920 9 14 5.9899 0.8855 -1.4258 10 1 6.5964 1.5452 -0.2417 11 1 6.4802 -0.5132 -1.5179 12 1 6.3717 1.6257 -2.6553 13 7 1.6649 2.0946 1.2618 14 6 1.5707 3.5510 1.0941 15 6 1.2758 4.1919 2.4257 16 6 -0.0138 4.5728 2.7346 17 6 -0.2943 5.1668 3.9510 18 6 0.7234 5.3730 4.8659 19 6 2.0117 4.9968 4.5583 20 6 2.3056 4.3971 3.3401 21 8 3.6281 4.0866 3.2503 22 6 4.3625 4.8628 4.2123 23 6 4.8257 6.1865 3.6009 24 6 5.5546 4.0724 4.7557 25 6 3.3156 5.1092 5.3243 26 1 -0.3633 -1.0246 -0.0799 27 1 -0.3634 0.4430 0.9273 28 1 -0.3633 0.5815 -0.8474 29 1 1.8935 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 3.7974 -0.0492 -2.9750 32 1 0.8019 1.7156 1.6220 33 1 0.7697 3.7850 0.3928 34 1 2.5152 3.9340 0.7077 35 1 -0.8076 4.4105 2.0205 36 1 -1.3049 5.4648 4.1883 37 1 0.5080 5.8331 5.8190 38 1 5.2754 6.8071 4.3760 39 1 5.5616 5.9889 2.8213 40 1 3.9704 6.7066 3.1697 41 1 5.2104 3.1101 5.1343 42 1 6.2781 3.9108 3.9566 43 1 6.0248 4.6336 5.5633 44 1 3.4305 6.1044 5.7537 45 1 3.3806 4.3433 6.0972 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080509195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:32 Heat of formation + Delta-G solvation = -35.687448 kcal Electronic energy + Delta-G solvation = -23727.517124 eV Core-core repulsion = 20515.958212 eV Total energy + Delta-G solvation = -3211.558911 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.21954 -38.98250 -37.88514 -35.11622 -34.36330 -33.36395 -32.07518 -30.83847 -28.54116 -28.37947 -27.43379 -26.00911 -24.33188 -23.01134 -21.63564 -21.49423 -21.34149 -18.41208 -18.06583 -17.22413 -16.85613 -16.74315 -16.18074 -16.04338 -15.75285 -14.98972 -14.98098 -14.62846 -14.45143 -14.12224 -13.82007 -13.77905 -13.53346 -13.45188 -13.17121 -13.15745 -12.94467 -12.89731 -12.79194 -12.59550 -12.55585 -12.33274 -12.04265 -11.96839 -11.74151 -11.60046 -11.53977 -11.25885 -11.05426 -10.44766 -9.64129 -8.98882 -8.93715 -8.08114 -6.19084 0.39633 0.52590 1.35720 1.36960 1.50512 2.41981 2.43382 2.79755 3.16097 3.49573 3.59538 3.75096 3.89037 3.94377 4.08880 4.19423 4.32208 4.38906 4.48565 4.54847 4.55671 4.63970 4.65700 4.67831 4.72047 4.73997 4.80419 4.85752 4.90531 5.03683 5.07398 5.12284 5.21288 5.27000 5.28200 5.34732 5.51944 5.53730 5.58181 5.65921 5.74324 5.88519 5.91008 6.34929 6.43305 6.50205 6.94449 6.99433 7.49337 8.95266 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.005733 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.144379 B = 4882.635744 C = 6443.686787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.226 3.774 4 H -0.032 1.032 5 C -0.506 4.506 6 H 0.041 0.959 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.276 1.276 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.121 3.879 15 C -0.122 4.122 16 C -0.090 4.090 17 C -0.146 4.146 18 C -0.073 4.073 19 C -0.188 4.188 20 C 0.107 3.893 21 O -0.319 6.319 22 C 0.080 3.920 23 C -0.156 4.156 24 C -0.138 4.138 25 C -0.087 4.087 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.326 0.674 33 H 0.026 0.974 34 H 0.042 0.958 35 H 0.138 0.862 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 12.138 16.700 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.118 3.882 4 H -0.015 1.015 5 C -0.544 4.544 6 H 0.059 0.941 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.204 1.204 13 N -0.310 5.310 14 C -0.008 4.008 15 C -0.123 4.123 16 C -0.108 4.108 17 C -0.164 4.164 18 C -0.091 4.091 19 C -0.188 4.188 20 C 0.061 3.939 21 O -0.234 6.234 22 C 0.043 3.957 23 C -0.213 4.213 24 C -0.194 4.194 25 C -0.124 4.124 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.124 0.876 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.158 11.910 16.607 20.679 hybrid contribution 0.323 -0.263 -1.385 1.446 sum -2.835 11.647 15.223 19.376 Atomic orbital electron populations 1.21734 0.96034 1.01259 1.00457 1.21576 0.94439 0.98696 1.01107 1.18943 0.94033 0.90760 0.84465 1.01456 1.21447 0.92882 1.36170 1.03943 0.94072 1.25646 1.02225 0.95390 0.95537 1.69998 1.36013 1.40156 1.09848 0.85586 0.81002 0.77880 0.77650 1.20125 1.20109 1.20431 1.60568 1.36957 1.02470 1.30969 1.20457 0.98664 0.89053 0.92617 1.19331 0.92950 1.04527 0.95486 1.21008 0.93839 0.97633 0.98336 1.21309 1.00506 1.01347 0.93266 1.20643 0.89856 0.98119 1.00445 1.21136 0.97264 1.05578 0.94860 1.19604 0.84682 0.95325 0.94302 1.87063 1.15967 1.60647 1.59682 1.23123 0.93398 0.91966 0.87216 1.22170 1.01475 0.95373 1.02288 1.21850 0.95469 1.00378 1.01754 1.21869 0.88556 1.05085 0.96897 0.92189 0.92550 0.94313 0.91190 0.94808 0.93021 0.85573 0.95627 0.93987 0.84453 0.82380 0.82716 0.87555 0.92739 0.93285 0.92413 0.92806 0.87026 0.86482 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 9.67 71.98 0.70 -4.72 16 2 C -0.12 -5.98 5.36 30.59 0.16 -5.82 16 3 C 0.23 12.23 2.02 44.17 0.09 12.32 16 4 H -0.03 -1.90 7.84 -2.39 -0.02 -1.92 16 5 C -0.51 -30.43 8.58 25.60 0.22 -30.21 16 6 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 7 C 0.01 0.57 5.29 84.65 0.45 1.02 16 8 N -0.92 -55.06 11.29 21.45 0.24 -54.82 16 9 Si 0.95 46.82 29.54 68.60 2.03 48.84 16 10 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 N -0.68 -31.99 6.26 -499.46 -3.13 -35.12 16 14 C 0.12 5.28 5.54 85.55 0.47 5.75 16 15 C -0.12 -4.42 5.45 -19.69 -0.11 -4.53 16 16 C -0.09 -2.52 9.63 22.21 0.21 -2.30 16 17 C -0.15 -3.20 10.07 22.31 0.22 -2.98 16 18 C -0.07 -1.57 10.03 22.18 0.22 -1.35 16 19 C -0.19 -5.08 6.27 -19.53 -0.12 -5.20 16 20 C 0.11 3.84 6.62 22.68 0.15 3.99 16 21 O -0.32 -12.53 10.48 -95.10 -1.00 -13.53 16 22 C 0.08 2.15 1.26 -10.21 -0.01 2.14 16 23 C -0.16 -3.62 8.86 71.98 0.64 -2.98 16 24 C -0.14 -3.17 8.95 71.98 0.64 -2.52 16 25 C -0.09 -1.86 6.18 30.73 0.19 -1.67 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 1.97 6.61 -2.39 -0.02 1.95 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 3.93 5.94 -2.39 -0.01 3.91 16 30 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 32 H 0.33 13.85 6.61 -89.69 -0.59 13.26 16 33 H 0.03 1.06 7.98 -2.38 -0.02 1.04 16 34 H 0.04 2.11 7.96 -2.39 -0.02 2.09 16 35 H 0.14 3.36 8.02 -2.91 -0.02 3.34 16 36 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 37 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.24 8.07 -2.39 -0.02 1.22 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.12 1.72 7.92 -2.39 -0.02 1.70 16 45 H 0.10 1.88 7.93 -2.38 -0.02 1.86 16 Total: -1.00 -72.00 360.91 2.64 -69.36 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.37 Total: 24.33 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 4.13 Total: -39.07 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -2.89 Total: -89.94 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -1.00 Total: -13.53 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -72.00 2.64 -69.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080509195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.674 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds