Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 110.05462 * 2 1 4 4 C 1.54266 * 110.03283 * 238.58723 * 2 1 3 5 5 C 1.54899 * 104.19319 * 217.10138 * 4 2 1 6 6 C 1.54891 * 102.74611 * 37.94376 * 5 4 2 7 7 C 1.53869 * 110.03436 * 121.41631 * 2 1 3 8 8 H 1.09001 * 110.03290 * 238.57680 * 7 2 1 9 9 N 1.46508 * 110.03177 * 0.02562 * 7 2 1 10 10 C 1.39663 * 120.00205 * 203.62291 * 9 7 2 11 11 C 1.38977 * 120.04508 * 359.72550 * 10 9 7 12 12 C 1.38115 * 120.03476 * 179.72434 * 11 10 9 13 13 C 1.38219 * 120.12512 * 0.55410 * 12 11 10 14 14 C 1.38773 * 120.09388 * 359.71708 * 13 12 11 15 15 O 1.35899 * 120.01479 * 180.02562 * 14 13 12 16 16 C 1.42900 * 117.00468 * 359.97438 * 15 14 13 17 17 C 1.52992 * 109.47113 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.46907 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99921 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99934 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99941 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 120.00160 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46921 * 89.99942 * 22 20 18 24 24 H 1.48495 * 109.47173 * 210.00209 * 22 20 18 25 25 H 1.48499 * 109.47058 * 330.00539 * 22 20 18 26 26 C 1.38615 * 119.96350 * 0.02562 * 14 13 12 27 27 H 1.08999 * 109.47387 * 298.58495 * 1 2 3 28 28 H 1.09008 * 109.46956 * 58.58503 * 1 2 3 29 29 H 1.08996 * 109.47117 * 178.58027 * 1 2 3 30 30 H 1.08998 * 110.48811 * 98.43123 * 4 2 1 31 31 H 1.08991 * 110.48773 * 335.77702 * 4 2 1 32 32 H 1.08997 * 110.75810 * 279.62763 * 5 4 2 33 33 H 1.08996 * 110.91000 * 156.32706 * 5 4 2 34 34 H 1.09000 * 110.48374 * 203.37774 * 6 5 4 35 35 H 1.08995 * 110.49176 * 80.73636 * 6 5 4 36 36 H 0.96994 * 119.99335 * 23.62024 * 9 7 2 37 37 H 1.07996 * 119.98449 * 359.97438 * 11 10 9 38 38 H 1.07993 * 119.94032 * 180.25393 * 12 11 10 39 39 H 1.08004 * 119.95114 * 179.74742 * 13 12 11 40 40 H 1.09000 * 109.47184 * 300.00071 * 16 15 14 41 41 H 1.09003 * 109.46779 * 59.99940 * 16 15 14 42 42 H 1.09000 * 109.47603 * 300.00365 * 17 16 15 43 43 H 1.09003 * 109.46897 * 60.00564 * 17 16 15 44 44 H 0.97004 * 119.99456 * 180.02562 * 21 20 18 45 45 H 1.07997 * 120.05967 * 180.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0584 -0.7554 -1.2369 5 6 3.3137 -1.5006 -0.7191 6 6 2.8875 -1.9406 0.7035 7 6 2.0571 -0.7535 1.2337 8 1 2.6866 -0.0953 1.8324 9 7 0.9358 -1.2456 2.0381 10 6 1.1145 -1.5085 3.3981 11 6 2.3569 -1.3091 3.9881 12 6 2.5318 -1.5637 5.3342 13 6 1.4757 -2.0281 6.0954 14 6 0.2343 -2.2344 5.5105 15 8 -0.8032 -2.6905 6.2605 16 6 -0.5445 -2.9371 7.6441 17 6 -1.8213 -3.4410 8.3198 18 6 -1.5483 -3.7016 9.7788 19 1 -0.5628 -3.5250 10.1836 20 6 -2.5567 -4.1654 10.5967 21 7 -2.3185 -4.3924 11.8701 22 14 -4.2612 -4.4716 9.8963 23 1 -4.3516 -5.8712 9.4082 24 1 -5.2786 -4.2498 10.9549 25 1 -4.5081 -3.5373 8.7687 26 6 0.0531 -1.9750 4.1610 27 1 -0.3634 0.4917 0.9024 28 1 -0.3633 0.5357 -0.8771 29 1 -0.3633 -1.0273 -0.0255 30 1 2.3297 -0.0535 -2.0254 31 1 1.3143 -1.4659 -1.5966 32 1 4.1710 -0.8289 -0.6751 33 1 3.5357 -2.3676 -1.3413 34 1 3.7637 -2.1036 1.3309 35 1 2.2772 -2.8425 0.6571 36 1 0.0695 -1.3887 1.6261 37 1 3.1850 -0.9510 3.3945 38 1 3.4969 -1.4043 5.7919 39 1 1.6167 -2.2301 7.1469 40 1 0.2384 -3.6895 7.7389 41 1 -0.2205 -2.0132 8.1234 42 1 -2.6040 -2.6883 8.2249 43 1 -2.1456 -4.3648 7.8406 44 1 -3.0279 -4.7191 12.4454 45 1 -0.9125 -2.1347 3.7043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086675031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = -43.648500 kcal Electronic energy + Delta-G solvation = -22259.358368 eV Core-core repulsion = 19047.454240 eV Total energy + Delta-G solvation = -3211.904129 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.16990 -40.15262 -38.35331 -35.48986 -34.91684 -32.91926 -32.26324 -31.20886 -29.77958 -27.89405 -26.91341 -26.00755 -23.74555 -23.14889 -21.97095 -21.56798 -20.13946 -19.45836 -18.72955 -17.48952 -17.15809 -16.96029 -16.66369 -16.35488 -16.12051 -15.71746 -15.20813 -14.78972 -14.58714 -14.49720 -14.44097 -14.18004 -13.68181 -13.58958 -13.25733 -13.14919 -12.91268 -12.60806 -12.45076 -12.24309 -12.02102 -11.91198 -11.81121 -11.74681 -11.65040 -11.59035 -11.47243 -11.43401 -11.39149 -10.82172 -10.77286 -9.22681 -8.35300 -8.31237 -6.42000 0.57357 0.69976 1.35548 1.36896 1.50006 2.18579 2.32924 2.72096 2.96250 2.99445 3.57831 3.72215 3.90328 3.99876 4.23128 4.23471 4.27540 4.33063 4.37576 4.45121 4.49891 4.51140 4.58063 4.60953 4.66021 4.70421 4.77770 4.91903 4.96005 4.97554 5.08108 5.12130 5.22881 5.25706 5.29602 5.29861 5.32920 5.40691 5.49635 5.50646 5.52713 5.66772 5.76211 6.16067 6.45312 6.59341 6.63410 6.83542 7.23013 8.80442 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033551 B = 0.002612 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.352664 B =10715.896599 C =11265.710286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 H 0.087 0.913 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.139 4.139 7 C 0.147 3.853 8 H 0.083 0.917 9 N -0.733 5.733 10 C 0.254 3.746 11 C -0.236 4.236 12 C -0.034 4.034 13 C -0.285 4.285 14 C 0.154 3.846 15 O -0.337 6.337 16 C 0.089 3.911 17 C -0.006 4.006 18 C -0.537 4.537 19 H 0.041 0.959 20 C 0.013 3.987 21 N -0.942 5.942 22 Si 0.950 3.050 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.251 1.251 26 C -0.251 4.251 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.404 0.596 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.117 0.883 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.270 0.730 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.888 9.521 -29.797 33.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.178 4.178 7 C 0.042 3.958 8 H 0.101 0.899 9 N -0.365 5.365 10 C 0.149 3.851 11 C -0.259 4.259 12 C -0.052 4.052 13 C -0.305 4.305 14 C 0.108 3.892 15 O -0.251 6.251 16 C 0.014 3.986 17 C -0.043 4.043 18 C -0.575 4.575 19 H 0.060 0.940 20 C -0.185 4.185 21 N -0.582 5.582 22 Si 0.772 3.228 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.175 1.175 26 C -0.275 4.275 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.244 0.756 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.761 9.499 -29.788 33.066 hybrid contribution -0.949 -0.486 0.701 1.276 sum 9.812 9.013 -29.086 31.993 Atomic orbital electron populations 1.21811 0.94929 1.01727 1.02284 1.21984 0.96224 0.99904 0.93724 0.89444 1.22442 0.97250 0.99046 0.96725 1.22454 0.98016 1.00378 0.95060 1.22879 0.99645 0.98034 0.97269 1.21727 0.87413 0.94920 0.91740 0.89867 1.45189 1.14137 1.72467 1.04684 1.17473 0.92430 0.90429 0.84794 1.20756 0.96757 1.12727 0.95638 1.20942 0.98032 0.92996 0.93274 1.21201 0.93945 1.14080 1.01317 1.19078 0.86892 0.92104 0.91152 1.85998 1.36159 1.79981 1.22950 1.22639 0.99353 0.99593 0.76978 1.19447 0.94155 0.96932 0.93801 1.21107 0.98033 1.45162 0.93154 0.94022 1.25889 1.03539 0.94189 0.94893 1.70030 1.35279 1.46592 1.06257 0.85666 0.78475 0.79795 0.78818 1.18922 1.20333 1.17499 1.19756 1.00391 1.15779 0.91551 0.92825 0.91292 0.92476 0.90351 0.91594 0.90483 0.91079 0.91421 0.92281 0.75624 0.83987 0.83692 0.86485 0.92550 0.92558 0.95449 0.95557 0.92075 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.72 71.98 0.56 -1.05 16 2 C -0.10 -1.02 3.50 -10.07 -0.04 -1.05 16 3 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 4 C -0.12 -1.00 6.36 31.67 0.20 -0.80 16 5 C -0.12 -1.12 6.91 31.89 0.22 -0.90 16 6 C -0.14 -1.81 6.53 31.67 0.21 -1.60 16 7 C 0.15 1.99 2.87 45.71 0.13 2.12 16 8 H 0.08 1.14 6.53 -2.39 -0.02 1.12 16 9 N -0.73 -13.20 4.68 -315.59 -1.48 -14.68 16 10 C 0.25 6.24 6.65 38.20 0.25 6.49 16 11 C -0.24 -5.47 9.21 22.42 0.21 -5.27 16 12 C -0.03 -0.87 10.03 22.24 0.22 -0.65 16 13 C -0.28 -9.30 9.04 22.39 0.20 -9.10 16 14 C 0.15 5.53 6.68 22.49 0.15 5.68 16 15 O -0.34 -13.97 10.13 -92.41 -0.94 -14.91 16 16 C 0.09 3.89 4.68 71.98 0.34 4.23 16 17 C -0.01 -0.29 4.41 29.85 0.13 -0.16 16 18 C -0.54 -31.49 9.66 25.60 0.25 -31.24 16 19 H 0.04 2.64 7.99 -2.91 -0.02 2.61 16 20 C 0.01 0.77 5.47 84.66 0.46 1.23 16 21 N -0.94 -58.93 13.96 21.45 0.30 -58.63 16 22 Si 0.95 44.91 27.47 68.60 1.88 46.80 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 26 C -0.25 -7.65 9.83 22.49 0.22 -7.42 16 27 H 0.05 0.69 7.71 -2.39 -0.02 0.67 16 28 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.06 0.61 6.92 -2.39 -0.02 0.60 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.61 7.84 -2.39 -0.02 0.59 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.94 8.05 -2.39 -0.02 0.92 16 36 H 0.40 6.67 5.78 -92.71 -0.54 6.13 16 37 H 0.14 2.52 6.26 -2.91 -0.02 2.50 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 39 H 0.12 3.94 6.29 -2.91 -0.02 3.93 16 40 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 41 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 42 H 0.03 1.35 7.20 -2.39 -0.02 1.34 16 43 H 0.03 1.28 7.57 -2.39 -0.02 1.27 16 44 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 45 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -66.98 353.26 3.86 -63.12 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.38 Total: 17.79 kcal Atomic # 6 Polarization: -43.21 SS G_CDS: 3.72 Total: -39.49 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.18 Total: -73.31 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.94 Total: -14.91 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.80 kcal Total: -66.98 3.86 -63.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086675031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.472 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds