Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.01073 * 2 1 4 4 C 1.54260 * 110.07427 * 121.41294 * 2 1 3 5 5 C 1.54886 * 104.19521 * 142.91898 * 4 2 1 6 6 C 1.55014 * 102.75689 * 322.04913 * 5 4 2 7 7 C 1.53875 * 110.03359 * 238.60645 * 2 1 3 8 8 H 1.09000 * 110.02900 * 0.02562 * 7 2 1 9 9 N 1.46509 * 110.02994 * 121.37933 * 7 2 1 10 10 C 1.39659 * 119.99777 * 204.30903 * 9 7 2 11 11 C 1.38972 * 120.04927 * 0.02562 * 10 9 7 12 12 C 1.38120 * 120.03773 * 179.97438 * 11 10 9 13 13 C 1.38217 * 120.12663 * 0.28148 * 12 11 10 14 14 C 1.38774 * 120.09276 * 359.48612 * 13 12 11 15 15 O 1.35891 * 120.01964 * 180.28088 * 14 13 12 16 16 C 1.42899 * 116.99877 * 0.20998 * 15 14 13 17 17 C 1.53003 * 109.47249 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47272 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00274 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99839 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00113 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99752 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47000 * 90.00498 * 22 20 18 24 24 H 1.48502 * 109.47411 * 210.00054 * 22 20 18 25 25 H 1.48503 * 109.47342 * 330.00436 * 22 20 18 26 26 C 1.38614 * 119.96060 * 0.48500 * 14 13 12 27 27 H 1.09001 * 109.46564 * 181.39076 * 1 2 3 28 28 H 1.08998 * 109.47659 * 301.38950 * 1 2 3 29 29 H 1.08998 * 109.47361 * 61.39657 * 1 2 3 30 30 H 1.08995 * 110.48912 * 261.59990 * 4 2 1 31 31 H 1.09004 * 110.48813 * 24.11001 * 4 2 1 32 32 H 1.09000 * 110.75684 * 80.37896 * 5 4 2 33 33 H 1.09007 * 110.75716 * 203.55761 * 5 4 2 34 34 H 1.09005 * 110.50452 * 279.29286 * 6 5 4 35 35 H 1.08994 * 110.52576 * 156.61310 * 6 5 4 36 36 H 0.96999 * 119.99744 * 24.31197 * 9 7 2 37 37 H 1.07998 * 119.98425 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.93398 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.95494 * 179.74725 * 13 12 11 40 40 H 1.08999 * 109.47110 * 299.99499 * 16 15 14 41 41 H 1.09002 * 109.47366 * 60.00094 * 16 15 14 42 42 H 1.09004 * 109.47293 * 299.99857 * 17 16 15 43 43 H 1.09002 * 109.46900 * 59.99759 * 17 16 15 44 44 H 0.97005 * 120.00171 * 179.97438 * 21 20 18 45 45 H 1.08003 * 120.06267 * 179.79114 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0595 -0.7552 1.2365 5 6 3.3150 -1.4995 0.7182 6 6 2.8883 -1.9402 -0.7054 7 6 2.0572 -0.7531 -1.2340 8 1 1.2229 -1.1181 -1.8331 9 7 2.9024 0.1324 -2.0390 10 6 3.0760 -0.1172 -3.4021 11 6 2.4470 -1.2048 -3.9960 12 6 2.6184 -1.4511 -5.3442 13 6 3.4199 -0.6208 -6.1048 14 6 4.0467 0.4696 -5.5182 15 8 4.8299 1.2883 -6.2685 16 6 4.9598 0.9697 -7.6555 17 6 5.8729 1.9949 -8.3310 18 6 6.0105 1.6585 -9.7934 19 1 5.4976 0.7997 -10.2006 20 6 6.7903 2.4478 -10.6120 21 7 7.4144 3.4938 -10.1163 22 14 6.9614 2.0303 -12.4247 23 1 5.8942 2.7192 -13.1941 24 1 8.2907 2.4779 -12.9125 25 1 6.8352 0.5621 -12.6087 26 6 3.8769 0.7207 -4.1656 27 1 -0.3632 -1.0274 0.0249 28 1 -0.3634 0.5352 0.8772 29 1 -0.3634 0.4920 -0.9022 30 1 2.3305 -0.0532 2.0251 31 1 1.3151 -1.4646 1.5980 32 1 4.1719 -0.8272 0.6740 33 1 3.5367 -2.3647 1.3431 34 1 2.2783 -2.8424 -0.6590 35 1 3.7640 -2.1026 -1.3337 36 1 3.3415 0.8919 -1.6252 37 1 1.8238 -1.8578 -3.4031 38 1 2.1291 -2.2971 -5.8040 39 1 3.5553 -0.8183 -7.1578 40 1 5.3915 -0.0257 -7.7607 41 1 3.9773 0.9914 -8.1269 42 1 5.4418 2.9905 -8.2258 43 1 6.8554 1.9727 -7.8594 44 1 7.9633 4.0490 -10.6921 45 1 4.3666 1.5668 -3.7067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086675032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = -39.068226 kcal Electronic energy + Delta-G solvation = -22111.182904 eV Core-core repulsion = 18899.477391 eV Total energy + Delta-G solvation = -3211.705513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00042 -39.05597 -37.13782 -34.06609 -33.29065 -31.56416 -30.83254 -29.69422 -28.61025 -27.38536 -25.21524 -24.69793 -22.60049 -21.85408 -21.00598 -20.19613 -19.86681 -17.89837 -16.68500 -16.35679 -15.71912 -15.67270 -15.21527 -15.12722 -14.97295 -14.53783 -14.12367 -13.92024 -13.35280 -13.23527 -13.15511 -12.70886 -12.52769 -12.29739 -12.07497 -11.78909 -11.45412 -11.33270 -11.31666 -11.20844 -11.06185 -10.94822 -10.88174 -10.84130 -10.71166 -10.40089 -9.93275 -9.66282 -9.60960 -9.26139 -8.42316 -7.90236 -7.26963 -6.07511 -4.11800 1.76214 1.91969 3.27956 3.29464 3.35496 3.38757 4.04890 4.12762 4.15615 4.31372 4.45102 4.48633 4.90534 5.04309 5.06780 5.11998 5.15062 5.19946 5.28871 5.32174 5.42955 5.47292 5.52953 5.57314 5.59943 5.62805 5.74446 5.78656 5.82099 5.86653 5.98913 6.01863 6.11714 6.13808 6.17525 6.47501 6.66699 6.71875 6.81385 6.94097 7.45666 7.55917 7.68608 7.73319 7.87118 8.15781 8.28253 8.93935 9.52247 11.04138 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040363 B = 0.002390 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.542893 B =11713.035260 C =11911.664882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.142 4.142 7 C 0.153 3.847 8 H 0.082 0.918 9 N -0.741 5.741 10 C 0.248 3.752 11 C -0.245 4.245 12 C -0.037 4.037 13 C -0.265 4.265 14 C 0.187 3.813 15 O -0.317 6.317 16 C 0.067 3.933 17 C 0.025 3.975 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.239 4.239 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.397 0.603 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 -10.323 22.352 27.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.181 4.181 7 C 0.047 3.953 8 H 0.100 0.900 9 N -0.371 5.371 10 C 0.145 3.855 11 C -0.267 4.267 12 C -0.056 4.056 13 C -0.286 4.286 14 C 0.139 3.861 15 O -0.230 6.230 16 C -0.007 4.007 17 C -0.012 4.012 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.263 4.263 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.231 0.769 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.834 -10.128 22.415 27.744 hybrid contribution 0.269 -0.007 -1.034 1.069 sum -12.565 -10.135 21.381 26.791 Atomic orbital electron populations 1.21854 0.94315 1.01971 1.02010 1.22034 0.96245 0.99820 0.94135 0.90411 1.22455 0.97510 0.99002 0.96832 1.22498 0.97603 0.99907 0.96155 1.22929 1.00625 0.97858 0.96658 1.21587 0.92571 0.89865 0.91252 0.89981 1.44761 1.54620 1.32231 1.05451 1.17362 0.92107 0.92552 0.83445 1.20404 1.09167 1.01431 0.95696 1.20618 0.94940 0.97083 0.92975 1.21136 1.06735 0.99481 1.01227 1.18822 0.88226 0.88482 0.90524 1.86142 1.62880 1.50295 1.23634 1.23305 1.00587 1.00975 0.75880 1.19128 0.94277 0.93633 0.94203 1.20981 1.30026 1.12360 0.92957 0.92350 1.24994 0.95338 0.94902 0.99012 1.69978 1.30907 1.16085 1.35867 0.86489 0.77493 0.78739 0.84668 1.20509 1.21075 1.19755 1.19666 1.09480 1.05030 0.92079 0.92424 0.92461 0.92373 0.91649 0.91331 0.91522 0.91646 0.91210 0.90749 0.76851 0.86700 0.86450 0.85652 0.93115 0.93116 0.95453 0.95443 0.92742 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 8.85 37.16 0.33 -0.57 16 2 C -0.10 -0.70 3.26 -89.50 -0.29 -1.00 16 3 H 0.08 0.55 7.61 -51.93 -0.40 0.16 16 4 C -0.12 -0.73 6.36 -25.08 -0.16 -0.88 16 5 C -0.12 -0.85 6.91 -24.67 -0.17 -1.02 16 6 C -0.14 -1.12 6.55 -25.01 -0.16 -1.29 16 7 C 0.15 1.28 2.57 -66.81 -0.17 1.10 16 8 H 0.08 0.72 6.00 -51.93 -0.31 0.41 16 9 N -0.74 -7.65 5.21 -51.10 -0.27 -7.92 16 10 C 0.25 3.35 6.65 -83.82 -0.56 2.79 16 11 C -0.24 -3.20 9.21 -39.35 -0.36 -3.56 16 12 C -0.04 -0.52 10.03 -39.63 -0.40 -0.92 16 13 C -0.27 -4.42 9.04 -39.39 -0.36 -4.78 16 14 C 0.19 3.46 6.68 -39.24 -0.26 3.20 16 15 O -0.32 -6.82 10.13 -19.40 -0.20 -7.01 16 16 C 0.07 1.48 4.68 37.16 0.17 1.65 16 17 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 18 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 22 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.24 -3.84 9.83 -39.24 -0.39 -4.23 16 27 H 0.06 0.33 8.12 -51.93 -0.42 -0.09 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 7.84 -51.93 -0.41 -0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.72 8.04 -51.93 -0.42 0.31 16 36 H 0.40 3.71 8.32 -40.82 -0.34 3.37 16 37 H 0.12 1.26 6.24 -52.49 -0.33 0.94 16 38 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.13 2.07 6.29 -52.49 -0.33 1.74 16 40 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -30.51 361.10 -10.16 -40.67 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.51 Total: 0.95 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -3.34 Total: -22.55 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.47 Total: -33.98 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -0.20 Total: -7.01 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.51 -10.16 -40.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086675032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.600 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds