Wall clock time and date at job start Tue Mar 31 2020 06:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.01073 * 2 1 4 4 C 1.54260 * 110.07427 * 121.41294 * 2 1 3 5 5 C 1.54886 * 104.19521 * 142.91898 * 4 2 1 6 6 C 1.55014 * 102.75689 * 322.04913 * 5 4 2 7 7 C 1.53875 * 110.03359 * 238.60645 * 2 1 3 8 8 H 1.09000 * 110.02900 * 0.02562 * 7 2 1 9 9 N 1.46509 * 110.02994 * 121.37933 * 7 2 1 10 10 C 1.39659 * 119.99777 * 204.30903 * 9 7 2 11 11 C 1.38972 * 120.04927 * 0.02562 * 10 9 7 12 12 C 1.38120 * 120.03773 * 179.97438 * 11 10 9 13 13 C 1.38217 * 120.12663 * 0.28148 * 12 11 10 14 14 C 1.38774 * 120.09276 * 359.48612 * 13 12 11 15 15 O 1.35891 * 120.01964 * 180.28088 * 14 13 12 16 16 C 1.42899 * 116.99877 * 0.20998 * 15 14 13 17 17 C 1.53003 * 109.47249 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47272 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00274 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99839 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00113 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99752 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47000 * 90.00498 * 22 20 18 24 24 H 1.48502 * 109.47411 * 210.00054 * 22 20 18 25 25 H 1.48503 * 109.47342 * 330.00436 * 22 20 18 26 26 C 1.38614 * 119.96060 * 0.48500 * 14 13 12 27 27 H 1.09001 * 109.46564 * 181.39076 * 1 2 3 28 28 H 1.08998 * 109.47659 * 301.38950 * 1 2 3 29 29 H 1.08998 * 109.47361 * 61.39657 * 1 2 3 30 30 H 1.08995 * 110.48912 * 261.59990 * 4 2 1 31 31 H 1.09004 * 110.48813 * 24.11001 * 4 2 1 32 32 H 1.09000 * 110.75684 * 80.37896 * 5 4 2 33 33 H 1.09007 * 110.75716 * 203.55761 * 5 4 2 34 34 H 1.09005 * 110.50452 * 279.29286 * 6 5 4 35 35 H 1.08994 * 110.52576 * 156.61310 * 6 5 4 36 36 H 0.96999 * 119.99744 * 24.31197 * 9 7 2 37 37 H 1.07998 * 119.98425 * 359.97438 * 11 10 9 38 38 H 1.08002 * 119.93398 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.95494 * 179.74725 * 13 12 11 40 40 H 1.08999 * 109.47110 * 299.99499 * 16 15 14 41 41 H 1.09002 * 109.47366 * 60.00094 * 16 15 14 42 42 H 1.09004 * 109.47293 * 299.99857 * 17 16 15 43 43 H 1.09002 * 109.46900 * 59.99759 * 17 16 15 44 44 H 0.97005 * 120.00171 * 179.97438 * 21 20 18 45 45 H 1.08003 * 120.06267 * 179.79114 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0595 -0.7552 1.2365 5 6 3.3150 -1.4995 0.7182 6 6 2.8883 -1.9402 -0.7054 7 6 2.0572 -0.7531 -1.2340 8 1 1.2229 -1.1181 -1.8331 9 7 2.9024 0.1324 -2.0390 10 6 3.0760 -0.1172 -3.4021 11 6 2.4470 -1.2048 -3.9960 12 6 2.6184 -1.4511 -5.3442 13 6 3.4199 -0.6208 -6.1048 14 6 4.0467 0.4696 -5.5182 15 8 4.8299 1.2883 -6.2685 16 6 4.9598 0.9697 -7.6555 17 6 5.8729 1.9949 -8.3310 18 6 6.0105 1.6585 -9.7934 19 1 5.4976 0.7997 -10.2006 20 6 6.7903 2.4478 -10.6120 21 7 7.4144 3.4938 -10.1163 22 14 6.9614 2.0303 -12.4247 23 1 5.8942 2.7192 -13.1941 24 1 8.2907 2.4779 -12.9125 25 1 6.8352 0.5621 -12.6087 26 6 3.8769 0.7207 -4.1656 27 1 -0.3632 -1.0274 0.0249 28 1 -0.3634 0.5352 0.8772 29 1 -0.3634 0.4920 -0.9022 30 1 2.3305 -0.0532 2.0251 31 1 1.3151 -1.4646 1.5980 32 1 4.1719 -0.8272 0.6740 33 1 3.5367 -2.3647 1.3431 34 1 2.2783 -2.8424 -0.6590 35 1 3.7640 -2.1026 -1.3337 36 1 3.3415 0.8919 -1.6252 37 1 1.8238 -1.8578 -3.4031 38 1 2.1291 -2.2971 -5.8040 39 1 3.5553 -0.8183 -7.1578 40 1 5.3915 -0.0257 -7.7607 41 1 3.9773 0.9914 -8.1269 42 1 5.4418 2.9905 -8.2258 43 1 6.8554 1.9727 -7.8594 44 1 7.9633 4.0490 -10.6921 45 1 4.3666 1.5668 -3.7067 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086675032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:58 Heat of formation + Delta-G solvation = -55.130879 kcal Electronic energy + Delta-G solvation = -22111.879433 eV Core-core repulsion = 18899.477391 eV Total energy + Delta-G solvation = -3212.402042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12779 -40.05238 -38.34932 -35.53772 -34.91969 -32.57178 -32.09521 -31.07475 -29.77950 -28.17856 -26.93907 -25.57555 -23.89008 -23.31282 -22.08427 -21.27305 -20.60207 -19.29072 -18.29067 -17.52798 -16.91832 -16.90790 -16.71275 -16.51984 -16.18029 -15.78337 -15.07501 -14.57318 -14.44638 -14.38869 -14.32110 -14.09392 -13.77021 -13.61222 -13.19935 -13.09070 -12.78235 -12.58825 -12.53560 -12.35660 -12.13578 -11.96911 -11.85983 -11.61627 -11.58329 -11.55718 -11.50526 -11.45278 -11.37793 -10.77098 -10.62022 -9.21693 -8.31761 -8.26597 -6.40353 0.57848 0.70555 1.40865 1.43491 1.54698 2.18136 2.40943 2.76493 2.96682 3.07639 3.56650 3.71918 3.91465 4.01342 4.25746 4.27474 4.28842 4.35633 4.36313 4.48663 4.50107 4.54771 4.62802 4.65489 4.69178 4.74805 4.79014 4.92955 4.98457 5.01703 5.10759 5.17515 5.26035 5.31597 5.32156 5.34287 5.41068 5.46925 5.50817 5.53693 5.66384 5.67489 5.79251 6.07427 6.46622 6.62849 6.74417 6.82830 7.29653 8.86693 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040363 B = 0.002390 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.542893 B =11713.035260 C =11911.664882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.140 4.140 7 C 0.149 3.851 8 H 0.084 0.916 9 N -0.732 5.732 10 C 0.256 3.744 11 C -0.237 4.237 12 C -0.032 4.032 13 C -0.283 4.283 14 C 0.152 3.848 15 O -0.343 6.343 16 C 0.087 3.913 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.977 3.023 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.255 4.255 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.401 0.599 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 -12.472 23.141 30.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.152 4.152 5 C -0.161 4.161 6 C -0.178 4.178 7 C 0.044 3.956 8 H 0.102 0.898 9 N -0.360 5.360 10 C 0.151 3.849 11 C -0.259 4.259 12 C -0.050 4.050 13 C -0.304 4.304 14 C 0.106 3.894 15 O -0.257 6.257 16 C 0.012 3.988 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.183 1.183 26 C -0.278 4.278 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.236 0.764 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.683 -12.290 23.260 30.127 hybrid contribution 0.773 0.640 -1.062 1.461 sum -13.909 -11.649 22.198 28.670 Atomic orbital electron populations 1.21843 0.93606 1.02555 1.01966 1.22014 0.96747 0.99490 0.93694 0.90816 1.22433 0.97202 0.99118 0.96472 1.22493 0.97714 1.00193 0.95717 1.22900 0.99932 0.98143 0.96870 1.21800 0.92278 0.89943 0.91578 0.89790 1.44920 1.54221 1.32492 1.04412 1.17433 0.90981 0.91975 0.84560 1.20756 1.08426 1.01070 0.95670 1.20964 0.93775 0.97123 0.93184 1.21210 1.07899 0.99810 1.01438 1.19153 0.89566 0.89522 0.91191 1.86051 1.64637 1.51916 1.23110 1.22837 0.99797 0.99416 0.76713 1.18973 0.93588 0.93641 0.94703 1.21395 1.30363 1.12913 0.93662 0.91115 1.26067 0.94659 0.94519 1.04565 1.70125 1.31654 1.17296 1.38014 0.85264 0.77675 0.79177 0.77816 1.19481 1.20601 1.18295 1.19776 1.10574 1.05867 0.91620 0.91572 0.91658 0.93273 0.91060 0.90256 0.92427 0.90753 0.89798 0.92671 0.76357 0.83880 0.83308 0.86084 0.92301 0.92265 0.98397 0.98397 0.92429 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.85 71.98 0.64 -0.77 16 2 C -0.10 -1.13 3.26 -10.07 -0.03 -1.17 16 3 H 0.07 0.91 7.61 -2.38 -0.02 0.89 16 4 C -0.11 -1.07 6.36 31.67 0.20 -0.87 16 5 C -0.12 -1.42 6.91 31.93 0.22 -1.20 16 6 C -0.14 -1.88 6.55 31.71 0.21 -1.68 16 7 C 0.15 2.13 2.57 45.71 0.12 2.25 16 8 H 0.08 1.21 6.00 -2.39 -0.01 1.19 16 9 N -0.73 -14.10 5.21 -315.59 -1.64 -15.74 16 10 C 0.26 6.62 6.65 38.20 0.25 6.88 16 11 C -0.24 -5.63 9.21 22.42 0.21 -5.42 16 12 C -0.03 -0.83 10.03 22.24 0.22 -0.60 16 13 C -0.28 -9.39 9.04 22.39 0.20 -9.19 16 14 C 0.15 5.78 6.68 22.49 0.15 5.93 16 15 O -0.34 -15.57 10.13 -92.32 -0.94 -16.51 16 16 C 0.09 4.01 4.68 71.98 0.34 4.35 16 17 C 0.03 1.59 5.34 29.85 0.16 1.75 16 18 C -0.55 -31.55 9.11 25.60 0.23 -31.31 16 19 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 20 C 0.00 0.02 5.46 84.66 0.46 0.48 16 21 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 22 Si 0.98 44.17 29.54 68.60 2.03 46.20 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 26 C -0.25 -8.34 9.83 22.49 0.22 -8.12 16 27 H 0.07 0.55 8.12 -2.39 -0.02 0.53 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.61 7.84 -2.38 -0.02 0.59 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.05 0.98 8.04 -2.39 -0.02 0.96 16 36 H 0.40 7.15 8.32 -92.71 -0.77 6.38 16 37 H 0.14 2.60 6.24 -2.91 -0.02 2.58 16 38 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.12 4.02 6.29 -2.91 -0.02 4.00 16 40 H 0.06 2.58 7.65 -2.39 -0.02 2.56 16 41 H 0.06 2.59 7.67 -2.39 -0.02 2.57 16 42 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 45 H 0.12 3.85 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -67.82 361.10 3.72 -64.09 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.19 Total: 18.02 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 3.80 Total: -38.69 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -1.36 Total: -73.11 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.94 Total: -16.51 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -67.82 3.72 -64.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086675032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -67.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds