Wall clock time and date at job start Tue Mar 31 2020 06:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.01747 * 2 1 4 4 C 1.54463 * 110.16183 * 121.25724 * 2 1 3 5 5 C 1.54890 * 104.10368 * 142.74946 * 4 2 1 6 6 C 1.54887 * 102.91108 * 322.30112 * 5 4 2 7 7 C 1.53877 * 110.03157 * 238.60561 * 2 1 3 8 8 H 1.08995 * 110.02951 * 121.38598 * 7 2 1 9 9 N 1.46495 * 110.07415 * 359.97438 * 7 2 1 10 10 C 1.39663 * 120.00274 * 156.35789 * 9 7 2 11 11 C 1.38977 * 120.04445 * 359.97438 * 10 9 7 12 12 C 1.38112 * 120.03381 * 180.02562 * 11 10 9 13 13 C 1.38214 * 120.13292 * 359.96250 * 12 11 10 14 14 C 1.38776 * 120.08988 * 0.02562 * 13 12 11 15 15 O 1.35901 * 120.01610 * 179.97438 * 14 13 12 16 16 C 1.42890 * 117.00210 * 0.02562 * 15 14 13 17 17 C 1.53003 * 109.47516 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47206 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00332 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99585 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00081 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99609 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46852 * 90.00299 * 22 20 18 24 24 H 1.48504 * 109.46957 * 209.99827 * 22 20 18 25 25 H 1.48496 * 109.47482 * 330.00457 * 22 20 18 26 26 C 1.38621 * 119.96524 * 359.74661 * 14 13 12 27 27 H 1.09001 * 109.47282 * 181.39133 * 1 2 3 28 28 H 1.08999 * 109.47360 * 301.39523 * 1 2 3 29 29 H 1.09000 * 109.46796 * 61.39531 * 1 2 3 30 30 H 1.09003 * 110.40626 * 24.15971 * 4 2 1 31 31 H 1.09003 * 110.65885 * 261.46196 * 4 2 1 32 32 H 1.09002 * 110.75897 * 203.89231 * 5 4 2 33 33 H 1.09006 * 110.75292 * 80.70460 * 5 4 2 34 34 H 1.09004 * 110.48468 * 156.53190 * 6 5 4 35 35 H 1.09004 * 110.48634 * 279.03637 * 6 5 4 36 36 H 0.97001 * 119.99885 * 336.35136 * 9 7 2 37 37 H 1.08001 * 119.98299 * 0.02562 * 11 10 9 38 38 H 1.08005 * 119.93365 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.95557 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47073 * 299.99665 * 16 15 14 41 41 H 1.09000 * 109.47233 * 59.99800 * 16 15 14 42 42 H 1.08997 * 109.46791 * 299.99915 * 17 16 15 43 43 H 1.08996 * 109.46699 * 59.99739 * 17 16 15 44 44 H 0.97002 * 119.99944 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.06618 * 180.27343 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0624 -0.7524 1.2395 5 6 3.3150 -1.4997 0.7182 6 6 2.8884 -1.9396 -0.7042 7 6 2.0571 -0.7531 -1.2340 8 1 2.6860 -0.0944 -1.8329 9 7 0.9366 -1.2452 -2.0393 10 6 1.1160 -1.5072 -3.3993 11 6 2.3570 -1.3008 -3.9899 12 6 2.5340 -1.5593 -5.3350 13 6 1.4788 -2.0245 -6.0969 14 6 0.2374 -2.2327 -5.5126 15 8 -0.7993 -2.6896 -6.2632 16 6 -0.5398 -2.9348 -7.6468 17 6 -1.8158 -3.4399 -8.3234 18 6 -1.5423 -3.6980 -9.7827 19 1 -0.5570 -3.5192 -10.1873 20 6 -2.5500 -4.1623 -10.6013 21 7 -3.7499 -4.3795 -10.1087 22 14 -2.2111 -4.4815 -12.4104 23 1 -1.7581 -5.8844 -12.5890 24 1 -3.4531 -4.2589 -13.1934 25 1 -1.1527 -3.5552 -12.8868 26 6 0.0566 -1.9789 -4.1619 27 1 -0.3634 -1.0274 0.0250 28 1 -0.3634 0.5353 0.8772 29 1 -0.3633 0.4920 -0.9022 30 1 1.3184 -1.4616 1.6022 31 1 2.3371 -0.0504 2.0269 32 1 3.5347 -2.3667 1.3412 33 1 4.1739 -0.8299 0.6742 34 1 3.7646 -2.1021 -1.3320 35 1 2.2807 -2.8433 -0.6579 36 1 0.0701 -1.3893 -1.6278 37 1 3.1834 -0.9379 -3.3967 38 1 3.4990 -1.3980 -5.7924 39 1 1.6205 -2.2261 -7.1484 40 1 -0.2169 -2.0103 -8.1254 41 1 0.2441 -3.6862 -7.7419 42 1 -2.1392 -4.3643 -7.8449 43 1 -2.5993 -2.6882 -8.2283 44 1 -4.4589 -4.7058 -10.6847 45 1 -0.9076 -2.1446 -3.7045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086675034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:03 Heat of formation + Delta-G solvation = -31.084876 kcal Electronic energy + Delta-G solvation = -22204.592514 eV Core-core repulsion = 18993.233185 eV Total energy + Delta-G solvation = -3211.359329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06622 -39.09813 -37.11044 -34.07508 -33.29505 -31.68227 -30.82958 -29.69787 -28.60111 -26.97352 -25.47046 -24.88249 -22.50290 -21.87609 -21.07706 -20.43036 -19.29666 -18.11198 -16.71921 -16.30436 -15.95864 -15.58551 -15.21906 -15.02957 -14.92093 -14.55833 -14.23598 -13.99641 -13.44130 -13.17713 -12.91391 -12.65214 -12.60283 -12.29796 -12.23731 -11.61916 -11.48941 -11.39956 -11.23444 -11.16721 -11.08540 -10.97701 -10.88142 -10.77495 -10.70327 -10.39661 -9.92972 -9.65796 -9.60791 -9.26034 -8.42214 -7.89823 -7.25683 -6.07454 -4.11705 1.76874 1.92796 3.29429 3.29997 3.35604 3.38913 4.04289 4.13135 4.17659 4.29852 4.45216 4.48085 4.90798 5.02668 5.05915 5.12060 5.13243 5.16966 5.28919 5.30002 5.43360 5.44549 5.50873 5.58921 5.59776 5.66736 5.73313 5.79698 5.82519 5.85245 5.98109 6.02005 6.11939 6.13988 6.18879 6.47903 6.67007 6.72383 6.81934 6.94645 7.46644 7.56176 7.68758 7.74154 7.87293 8.16098 8.28394 8.94019 9.52310 11.04197 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040070 B = 0.002448 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.607988 B =11433.610047 C =11860.586214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.140 4.140 7 C 0.153 3.847 8 H 0.081 0.919 9 N -0.743 5.743 10 C 0.247 3.753 11 C -0.245 4.245 12 C -0.037 4.037 13 C -0.266 4.266 14 C 0.188 3.812 15 O -0.317 6.317 16 C 0.067 3.933 17 C 0.025 3.975 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.240 4.240 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.263 0.737 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.654 8.514 22.426 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.122 4.122 3 H 0.097 0.903 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.179 4.179 7 C 0.047 3.953 8 H 0.099 0.901 9 N -0.376 5.376 10 C 0.145 3.855 11 C -0.267 4.267 12 C -0.056 4.056 13 C -0.286 4.286 14 C 0.140 3.860 15 O -0.230 6.230 16 C -0.007 4.007 17 C -0.012 4.012 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.263 4.263 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.408 8.480 22.487 27.520 hybrid contribution -0.023 -0.279 -1.050 1.087 sum 13.384 8.201 21.437 26.570 Atomic orbital electron populations 1.21820 0.94844 1.01784 1.02319 1.22016 0.96315 0.99614 0.94244 0.90319 1.22487 0.97501 0.98985 0.96804 1.22459 0.97610 0.99984 0.96267 1.22911 1.00055 0.98886 0.96020 1.21501 0.87978 0.94524 0.91305 0.90083 1.45036 1.13145 1.73668 1.05755 1.17394 0.92915 0.91581 0.83655 1.20409 0.96294 1.14204 0.95810 1.20615 0.97638 0.94380 0.92984 1.21130 0.93509 1.12741 1.01233 1.18824 0.86942 0.89775 0.90493 1.86141 1.34463 1.78493 1.23861 1.23303 1.02288 0.99154 0.76001 1.19126 0.90636 0.97281 0.94195 1.20983 0.96986 1.45146 0.93204 0.92350 1.24997 0.94961 0.95291 0.99003 1.69979 1.01797 1.45092 1.35969 0.86487 0.77770 0.78666 0.84461 1.20510 1.21076 1.19757 1.19657 0.99472 1.15035 0.92158 0.92379 0.92314 0.91754 0.91404 0.91561 0.91504 0.91442 0.91367 0.90930 0.76159 0.86711 0.86478 0.85665 0.93122 0.93122 0.95453 0.95446 0.92744 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.73 37.16 0.29 -0.73 16 2 C -0.10 -0.70 3.49 -89.40 -0.31 -1.01 16 3 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.72 6.39 -24.97 -0.16 -0.88 16 5 C -0.13 -0.78 6.90 -24.74 -0.17 -0.95 16 6 C -0.14 -1.11 6.53 -25.07 -0.16 -1.28 16 7 C 0.15 1.28 2.87 -66.81 -0.19 1.09 16 8 H 0.08 0.71 6.51 -51.93 -0.34 0.37 16 9 N -0.74 -7.74 4.68 -51.11 -0.24 -7.98 16 10 C 0.25 3.36 6.65 -83.81 -0.56 2.80 16 11 C -0.24 -3.22 9.21 -39.35 -0.36 -3.58 16 12 C -0.04 -0.52 10.03 -39.64 -0.40 -0.92 16 13 C -0.27 -4.44 9.04 -39.39 -0.36 -4.80 16 14 C 0.19 3.47 6.68 -39.24 -0.26 3.21 16 15 O -0.32 -6.83 10.13 -19.43 -0.20 -7.02 16 16 C 0.07 1.48 4.68 37.16 0.17 1.66 16 17 C 0.02 0.66 5.34 -27.88 -0.15 0.52 16 18 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 22 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 26 C -0.24 -3.87 9.83 -39.23 -0.39 -4.25 16 27 H 0.06 0.39 6.93 -51.93 -0.36 0.03 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.50 7.71 -51.93 -0.40 0.10 16 30 H 0.07 0.42 7.84 -51.93 -0.41 0.01 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.40 3.82 5.78 -40.82 -0.24 3.58 16 37 H 0.11 1.26 6.25 -52.49 -0.33 0.93 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 39 H 0.13 2.08 6.29 -52.49 -0.33 1.75 16 40 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 41 H 0.05 1.08 7.66 -51.93 -0.40 0.68 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 356.91 15.07 5.38 5.38 Total: -1.00 -30.54 356.91 -10.14 -40.68 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.38 Total: 1.22 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.42 Total: -22.70 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.50 Total: -34.04 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.20 Total: -7.02 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.54 -10.14 -40.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086675034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.596 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds