Wall clock time and date at job start Tue Mar 31 2020 06:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.01747 * 2 1 4 4 C 1.54463 * 110.16183 * 121.25724 * 2 1 3 5 5 C 1.54890 * 104.10368 * 142.74946 * 4 2 1 6 6 C 1.54887 * 102.91108 * 322.30112 * 5 4 2 7 7 C 1.53877 * 110.03157 * 238.60561 * 2 1 3 8 8 H 1.08995 * 110.02951 * 121.38598 * 7 2 1 9 9 N 1.46495 * 110.07415 * 359.97438 * 7 2 1 10 10 C 1.39663 * 120.00274 * 156.35789 * 9 7 2 11 11 C 1.38977 * 120.04445 * 359.97438 * 10 9 7 12 12 C 1.38112 * 120.03381 * 180.02562 * 11 10 9 13 13 C 1.38214 * 120.13292 * 359.96250 * 12 11 10 14 14 C 1.38776 * 120.08988 * 0.02562 * 13 12 11 15 15 O 1.35901 * 120.01610 * 179.97438 * 14 13 12 16 16 C 1.42890 * 117.00210 * 0.02562 * 15 14 13 17 17 C 1.53003 * 109.47516 * 180.02562 * 16 15 14 18 18 C 1.50693 * 109.47206 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00332 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99585 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00081 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99609 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46852 * 90.00299 * 22 20 18 24 24 H 1.48504 * 109.46957 * 209.99827 * 22 20 18 25 25 H 1.48496 * 109.47482 * 330.00457 * 22 20 18 26 26 C 1.38621 * 119.96524 * 359.74661 * 14 13 12 27 27 H 1.09001 * 109.47282 * 181.39133 * 1 2 3 28 28 H 1.08999 * 109.47360 * 301.39523 * 1 2 3 29 29 H 1.09000 * 109.46796 * 61.39531 * 1 2 3 30 30 H 1.09003 * 110.40626 * 24.15971 * 4 2 1 31 31 H 1.09003 * 110.65885 * 261.46196 * 4 2 1 32 32 H 1.09002 * 110.75897 * 203.89231 * 5 4 2 33 33 H 1.09006 * 110.75292 * 80.70460 * 5 4 2 34 34 H 1.09004 * 110.48468 * 156.53190 * 6 5 4 35 35 H 1.09004 * 110.48634 * 279.03637 * 6 5 4 36 36 H 0.97001 * 119.99885 * 336.35136 * 9 7 2 37 37 H 1.08001 * 119.98299 * 0.02562 * 11 10 9 38 38 H 1.08005 * 119.93365 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.95557 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47073 * 299.99665 * 16 15 14 41 41 H 1.09000 * 109.47233 * 59.99800 * 16 15 14 42 42 H 1.08997 * 109.46791 * 299.99915 * 17 16 15 43 43 H 1.08996 * 109.46699 * 59.99739 * 17 16 15 44 44 H 0.97002 * 119.99944 * 179.97438 * 21 20 18 45 45 H 1.07997 * 120.06618 * 180.27343 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0624 -0.7524 1.2395 5 6 3.3150 -1.4997 0.7182 6 6 2.8884 -1.9396 -0.7042 7 6 2.0571 -0.7531 -1.2340 8 1 2.6860 -0.0944 -1.8329 9 7 0.9366 -1.2452 -2.0393 10 6 1.1160 -1.5072 -3.3993 11 6 2.3570 -1.3008 -3.9899 12 6 2.5340 -1.5593 -5.3350 13 6 1.4788 -2.0245 -6.0969 14 6 0.2374 -2.2327 -5.5126 15 8 -0.7993 -2.6896 -6.2632 16 6 -0.5398 -2.9348 -7.6468 17 6 -1.8158 -3.4399 -8.3234 18 6 -1.5423 -3.6980 -9.7827 19 1 -0.5570 -3.5192 -10.1873 20 6 -2.5500 -4.1623 -10.6013 21 7 -3.7499 -4.3795 -10.1087 22 14 -2.2111 -4.4815 -12.4104 23 1 -1.7581 -5.8844 -12.5890 24 1 -3.4531 -4.2589 -13.1934 25 1 -1.1527 -3.5552 -12.8868 26 6 0.0566 -1.9789 -4.1619 27 1 -0.3634 -1.0274 0.0250 28 1 -0.3634 0.5353 0.8772 29 1 -0.3633 0.4920 -0.9022 30 1 1.3184 -1.4616 1.6022 31 1 2.3371 -0.0504 2.0269 32 1 3.5347 -2.3667 1.3412 33 1 4.1739 -0.8299 0.6742 34 1 3.7646 -2.1021 -1.3320 35 1 2.2807 -2.8433 -0.6579 36 1 0.0701 -1.3893 -1.6278 37 1 3.1834 -0.9379 -3.3967 38 1 3.4990 -1.3980 -5.7924 39 1 1.6205 -2.2261 -7.1484 40 1 -0.2169 -2.0103 -8.1254 41 1 0.2441 -3.6862 -7.7419 42 1 -2.1392 -4.3643 -7.8449 43 1 -2.5993 -2.6882 -8.2283 44 1 -4.4589 -4.7058 -10.6847 45 1 -0.9076 -2.1446 -3.7045 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086675034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:02 Heat of formation + Delta-G solvation = -46.839633 kcal Electronic energy + Delta-G solvation = -22205.275692 eV Core-core repulsion = 18993.233185 eV Total energy + Delta-G solvation = -3212.042506 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.15526 -40.13287 -38.33124 -35.53101 -34.91416 -32.58023 -32.25501 -31.07755 -29.75274 -27.85166 -26.86110 -26.01061 -23.86895 -23.30757 -22.02325 -21.55820 -20.11834 -19.34314 -18.41745 -17.44579 -17.15027 -16.90747 -16.65604 -16.55997 -16.07325 -15.73242 -15.17180 -14.59659 -14.51461 -14.40808 -14.31610 -14.15967 -13.65428 -13.53161 -13.21853 -13.09812 -12.86769 -12.63192 -12.53377 -12.42721 -12.00012 -11.92437 -11.83365 -11.65417 -11.60866 -11.54882 -11.46821 -11.40809 -11.37646 -10.76723 -10.61983 -9.21626 -8.30777 -8.26590 -6.40315 0.58109 0.71038 1.40864 1.43497 1.54708 2.18850 2.41348 2.77283 2.97044 3.07628 3.58184 3.71855 3.90498 4.01024 4.25814 4.28017 4.28866 4.33839 4.38503 4.45484 4.51424 4.52261 4.58071 4.61976 4.69691 4.74894 4.78237 4.93452 4.96042 4.98876 5.08401 5.22748 5.25455 5.29072 5.31580 5.33753 5.40966 5.46979 5.50750 5.53755 5.66373 5.67712 5.79346 6.07471 6.47292 6.63042 6.74430 6.82717 7.29653 8.86696 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.040070 B = 0.002448 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.607988 B =11433.610047 C =11860.586214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 H 0.088 0.912 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.139 4.139 7 C 0.147 3.853 8 H 0.085 0.915 9 N -0.734 5.734 10 C 0.254 3.746 11 C -0.237 4.237 12 C -0.032 4.032 13 C -0.283 4.283 14 C 0.152 3.848 15 O -0.343 6.343 16 C 0.087 3.913 17 C 0.028 3.972 18 C -0.546 4.546 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.978 3.022 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.256 4.256 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.403 0.597 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.121 0.879 40 H 0.059 0.941 41 H 0.059 0.941 42 H -0.002 1.002 43 H -0.002 1.002 44 H 0.267 0.733 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.281 9.491 23.205 29.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.155 4.155 5 C -0.159 4.159 6 C -0.178 4.178 7 C 0.042 3.958 8 H 0.103 0.897 9 N -0.366 5.366 10 C 0.149 3.851 11 C -0.259 4.259 12 C -0.050 4.050 13 C -0.304 4.304 14 C 0.106 3.894 15 O -0.257 6.257 16 C 0.012 3.988 17 C -0.009 4.009 18 C -0.583 4.583 19 H 0.089 0.911 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.801 3.199 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.183 1.183 26 C -0.279 4.279 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.243 0.757 37 H 0.162 0.838 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.076 0.924 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.056 9.474 23.323 29.858 hybrid contribution -0.806 -0.528 -1.076 1.444 sum 15.250 8.946 22.247 28.417 Atomic orbital electron populations 1.21809 0.95042 1.01664 1.02258 1.22017 0.96106 0.99964 0.93744 0.89386 1.22478 0.97253 0.99065 0.96677 1.22450 0.98030 1.00377 0.95003 1.22875 0.99658 0.97978 0.97307 1.21729 0.87382 0.94948 0.91714 0.89746 1.45200 1.14158 1.72498 1.04703 1.17474 0.92444 0.90397 0.84761 1.20765 0.96670 1.12717 0.95777 1.20962 0.98057 0.92845 0.93185 1.21205 0.93663 1.14078 1.01452 1.19152 0.87092 0.91996 0.91152 1.86051 1.36427 1.79885 1.23349 1.22836 0.99617 0.99486 0.76825 1.18971 0.92115 0.95127 0.94688 1.21396 0.97724 1.45305 0.93905 0.91121 1.26069 0.94531 0.94683 1.04530 1.70126 1.02986 1.45868 1.38100 0.85263 0.77999 0.79020 0.77647 1.19489 1.20595 1.18298 1.19768 1.00396 1.16056 0.91716 0.92600 0.91251 0.92902 0.91701 0.90242 0.91102 0.90375 0.91314 0.92405 0.75744 0.83836 0.83334 0.86098 0.92296 0.92291 0.98403 0.98384 0.92430 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 7.73 71.98 0.56 -1.24 16 2 C -0.10 -1.10 3.49 -10.00 -0.03 -1.14 16 3 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.09 6.39 31.74 0.20 -0.89 16 5 C -0.12 -1.18 6.90 31.88 0.22 -0.96 16 6 C -0.14 -1.91 6.53 31.67 0.21 -1.70 16 7 C 0.15 2.12 2.87 45.72 0.13 2.26 16 8 H 0.08 1.20 6.51 -2.39 -0.02 1.19 16 9 N -0.73 -14.28 4.68 -315.60 -1.48 -15.76 16 10 C 0.25 6.63 6.65 38.20 0.25 6.88 16 11 C -0.24 -5.64 9.21 22.42 0.21 -5.43 16 12 C -0.03 -0.83 10.03 22.23 0.22 -0.60 16 13 C -0.28 -9.43 9.04 22.39 0.20 -9.22 16 14 C 0.15 5.81 6.68 22.49 0.15 5.96 16 15 O -0.34 -15.59 10.13 -92.43 -0.94 -16.52 16 16 C 0.09 4.01 4.68 71.98 0.34 4.35 16 17 C 0.03 1.60 5.34 29.85 0.16 1.76 16 18 C -0.55 -31.56 9.11 25.60 0.23 -31.32 16 19 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 20 C 0.00 0.02 5.46 84.66 0.46 0.48 16 21 N -0.93 -57.65 13.29 21.45 0.28 -57.36 16 22 Si 0.98 44.18 29.54 68.60 2.03 46.21 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 26 C -0.26 -8.41 9.83 22.49 0.22 -8.19 16 27 H 0.06 0.69 6.93 -2.39 -0.02 0.67 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.76 7.71 -2.39 -0.02 0.74 16 30 H 0.06 0.66 7.84 -2.39 -0.02 0.64 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.06 0.97 8.06 -2.38 -0.02 0.96 16 36 H 0.40 7.39 5.78 -92.71 -0.54 6.85 16 37 H 0.14 2.59 6.25 -2.91 -0.02 2.58 16 38 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 39 H 0.12 4.02 6.29 -2.91 -0.02 4.01 16 40 H 0.06 2.58 7.66 -2.38 -0.02 2.56 16 41 H 0.06 2.58 7.66 -2.39 -0.02 2.56 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.12 3.85 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -67.82 356.91 4.06 -63.77 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.43 Total: 18.69 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 3.73 Total: -39.02 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.19 Total: -73.12 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.94 Total: -16.52 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -67.82 4.06 -63.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086675034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.927 kcal (2) G-P(sol) polarization free energy of solvation -67.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds