Wall clock time and date at job start Tue Mar 31 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47432 * 2 1 4 4 H 1.08998 * 109.47385 * 55.12864 * 3 2 1 5 5 C 1.50699 * 109.47249 * 175.13478 * 3 2 1 6 6 H 1.07998 * 120.00483 * 119.99978 * 5 3 2 7 7 C 1.37879 * 119.99758 * 299.99750 * 5 3 2 8 8 N 1.31514 * 119.99942 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47207 * 90.00091 * 9 7 5 11 11 H 1.48498 * 109.47114 * 209.99558 * 9 7 5 12 12 H 1.48500 * 109.47302 * 329.99903 * 9 7 5 13 13 N 1.46907 * 109.47012 * 295.13047 * 3 2 1 14 14 C 1.46896 * 110.99958 * 103.13205 * 13 3 2 15 15 H 1.09007 * 109.24902 * 338.53208 * 14 13 3 16 16 C 1.52728 * 109.25723 * 219.06507 * 14 13 3 17 17 C 1.53321 * 108.37432 * 188.68589 * 16 14 13 18 18 C 1.52728 * 108.37082 * 69.94249 * 17 16 14 19 19 C 1.50650 * 110.56445 * 308.91969 * 18 17 16 20 20 C 1.39034 * 117.63838 * 197.50975 * 19 18 17 21 21 C 1.37832 * 120.61399 * 180.21849 * 20 19 18 22 22 C 1.38763 * 119.70721 * 0.02562 * 21 20 19 23 23 O 1.35903 * 120.17452 * 179.87184 * 22 21 20 24 24 C 1.42903 * 117.00046 * 0.02562 * 23 22 21 25 25 C 1.38420 * 119.65373 * 359.89593 * 22 21 20 26 26 C 1.37633 * 122.59820 * 17.54596 * 19 18 17 27 27 H 1.08997 * 109.47123 * 58.24390 * 1 2 3 28 28 H 1.08997 * 109.47273 * 178.24947 * 1 2 3 29 29 H 1.09002 * 109.46686 * 298.24544 * 1 2 3 30 30 H 1.09005 * 109.47016 * 239.99618 * 2 1 3 31 31 H 1.09005 * 109.47173 * 120.00411 * 2 1 3 32 32 H 0.97004 * 120.00319 * 180.02562 * 8 7 5 33 33 H 1.00904 * 110.99883 * 227.08501 * 13 3 2 34 34 H 1.09001 * 109.68251 * 68.96239 * 16 14 13 35 35 H 1.09010 * 109.68306 * 308.40618 * 16 14 13 36 36 H 1.09005 * 109.68551 * 310.22699 * 17 16 14 37 37 H 1.08997 * 109.69055 * 189.66117 * 17 16 14 38 38 H 1.09001 * 109.25626 * 69.19329 * 18 17 16 39 39 H 1.09002 * 109.24901 * 188.65498 * 18 17 16 40 40 H 1.07999 * 119.70327 * 0.20784 * 20 19 18 41 41 H 1.07994 * 120.14872 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46909 * 59.99515 * 24 23 22 43 43 H 1.08996 * 109.47628 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47195 * 300.00488 * 24 23 22 45 45 H 1.08004 * 119.74823 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9809 0.8431 5 6 3.5422 1.4441 0.1205 6 1 4.1459 1.8892 -0.6566 7 6 4.1460 0.8773 1.2229 8 7 3.4109 0.3357 2.1695 9 14 6.0080 0.8800 1.3727 10 1 6.4463 2.1124 2.0758 11 1 6.4442 -0.3116 2.1441 12 1 6.6137 0.8413 0.0174 13 7 1.6488 2.1002 -1.2540 14 6 0.5081 3.0012 -1.0421 15 1 -0.0204 2.7049 -0.1359 16 6 -0.4412 2.9010 -2.2343 17 6 -1.5031 3.9988 -2.1002 18 6 -0.8316 5.3497 -2.3384 19 6 0.3957 5.4899 -1.4761 20 6 0.9076 6.7686 -1.2859 21 6 2.0308 6.9670 -0.5121 22 6 2.6571 5.8807 0.0823 23 8 3.7667 6.0652 0.8450 24 6 4.2357 7.4068 0.9942 25 6 2.1461 4.6082 -0.1061 26 6 1.0130 4.4118 -0.8839 27 1 -0.3633 0.5408 -0.8738 28 1 -0.3634 -1.0271 -0.0314 29 1 -0.3633 0.4864 0.9053 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8356 -0.0627 2.9453 33 1 2.4285 2.5937 -1.6620 34 1 -0.9226 1.9231 -2.2391 35 1 0.1165 3.0408 -3.1605 36 1 -1.9325 3.9738 -1.0986 37 1 -2.2877 3.8432 -2.8406 38 1 -0.5451 5.4287 -3.3871 39 1 -1.5338 6.1476 -2.0967 40 1 0.4208 7.6142 -1.7488 41 1 2.4218 7.9635 -0.3690 42 1 3.4579 8.0143 1.4568 43 1 5.1250 7.4129 1.6243 44 1 4.4821 7.8166 0.0146 45 1 2.6321 3.7617 0.3561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092383968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:22 Heat of formation + Delta-G solvation = -28.370666 kcal Electronic energy + Delta-G solvation = -24185.663912 eV Core-core repulsion = 20974.422280 eV Total energy + Delta-G solvation = -3211.241632 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22042 -38.46957 -36.14379 -34.76402 -32.78688 -31.35168 -29.79400 -29.41815 -28.34192 -26.80379 -25.56231 -23.05509 -22.59397 -22.03381 -21.15891 -19.49893 -19.09014 -17.65588 -16.44022 -15.98330 -15.50360 -15.33853 -14.92494 -14.57435 -14.20578 -13.80452 -13.70054 -13.24478 -12.98571 -12.74351 -12.62530 -12.36709 -12.25363 -11.99963 -11.80679 -11.64502 -11.40266 -11.09035 -10.95937 -10.79874 -10.66786 -10.58210 -10.46329 -10.33814 -10.12961 -9.96513 -9.55738 -9.33312 -8.79773 -8.53997 -8.35203 -7.69448 -7.20557 -5.99735 -4.07395 1.66854 1.77325 3.32821 3.39039 3.42733 3.57339 4.05844 4.43784 4.91318 4.98732 5.09437 5.11066 5.23725 5.24455 5.30898 5.33205 5.49492 5.54371 5.55899 5.59337 5.83851 5.92364 6.01438 6.04333 6.13559 6.20269 6.25245 6.39130 6.40689 6.51525 6.58205 6.67429 6.70941 6.76548 6.77683 6.99345 7.14865 7.19051 7.23290 7.50710 7.61472 7.78757 7.81321 7.98296 8.29317 8.42391 8.70314 9.05413 9.59076 11.04529 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.007423 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.969814 B = 3771.246619 C = 5811.763764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.012 0.988 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.680 5.680 14 C 0.126 3.874 15 H 0.081 0.919 16 C -0.103 4.103 17 C -0.121 4.121 18 C -0.071 4.071 19 C -0.114 4.114 20 C -0.094 4.094 21 C -0.213 4.213 22 C 0.120 3.880 23 O -0.311 6.311 24 C 0.030 3.970 25 C -0.145 4.145 26 C -0.056 4.056 27 H 0.048 0.952 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.261 0.739 33 H 0.336 0.664 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 12.153 -5.748 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.030 0.970 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.309 5.309 14 C 0.016 3.984 15 H 0.099 0.901 16 C -0.141 4.141 17 C -0.159 4.159 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.232 4.232 22 C 0.075 3.925 23 O -0.225 6.225 24 C -0.066 4.066 25 C -0.164 4.164 26 C -0.058 4.058 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.154 0.846 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.069 0.931 43 H 0.114 0.886 44 H 0.069 0.931 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.445 11.356 -5.667 14.234 hybrid contribution 1.575 1.175 0.688 2.082 sum -4.870 12.531 -4.979 14.336 Atomic orbital electron populations 1.21857 0.99683 0.98790 0.99956 1.21538 0.91494 0.99586 1.01795 1.19242 0.94080 0.91198 0.84671 0.96983 1.21440 0.91501 1.38166 1.05396 0.92371 1.24884 0.98004 0.94943 0.95663 1.69886 1.34833 1.38200 1.09370 0.86617 0.85946 0.77464 0.78151 1.20652 1.21288 1.19911 1.60911 1.09061 1.31075 1.29900 1.20609 0.93858 0.86036 0.97938 0.90119 1.21557 0.95867 0.98050 0.98631 1.21581 0.97944 0.94663 1.01706 1.20354 0.94040 0.97902 0.98457 1.19530 0.98393 0.92475 1.01103 1.20820 0.95753 0.96416 0.98225 1.21059 0.99957 0.97770 1.04407 1.18962 0.87117 0.94220 0.92221 1.86180 1.41332 1.28742 1.66198 1.22973 0.99652 0.82599 1.01359 1.21161 0.97484 0.96402 1.01308 1.20389 0.93902 0.96643 0.94880 0.93320 0.95423 0.94702 0.94523 0.89363 0.92931 0.84583 0.91226 0.91748 0.91909 0.91859 0.91295 0.91694 0.86633 0.86219 0.93141 0.88615 0.93105 0.82262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.07 37.16 0.34 -2.62 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.23 1.04 -68.86 -0.07 5.16 16 4 H 0.01 0.33 6.80 -51.93 -0.35 -0.02 16 5 C -0.53 -14.05 7.48 -34.44 -0.26 -14.31 16 6 H 0.06 1.56 7.39 -52.49 -0.39 1.17 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.94 11.29 55.43 0.63 -24.32 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -14.14 5.59 -102.34 -0.57 -14.71 16 14 C 0.13 2.28 1.53 -69.03 -0.11 2.18 16 15 H 0.08 1.59 6.64 -51.93 -0.34 1.24 16 16 C -0.10 -1.54 5.49 -26.70 -0.15 -1.69 16 17 C -0.12 -1.51 5.98 -26.70 -0.16 -1.67 16 18 C -0.07 -0.87 5.67 -28.05 -0.16 -1.03 16 19 C -0.11 -1.74 5.74 -104.57 -0.60 -2.34 16 20 C -0.09 -1.33 9.60 -39.43 -0.38 -1.71 16 21 C -0.21 -3.19 9.04 -39.54 -0.36 -3.55 16 22 C 0.12 2.17 6.68 -39.32 -0.26 1.90 16 23 O -0.31 -5.60 10.50 -19.43 -0.20 -5.80 16 24 C 0.03 0.36 9.82 101.05 0.99 1.35 16 25 C -0.15 -2.90 8.69 -39.30 -0.34 -3.24 16 26 C -0.06 -1.01 5.30 -104.65 -0.55 -1.56 16 27 H 0.05 0.92 5.48 -51.93 -0.28 0.64 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.34 7.22 6.91 -39.29 -0.27 6.94 16 34 H 0.07 1.04 6.85 -51.93 -0.36 0.69 16 35 H 0.06 0.97 8.10 -51.92 -0.42 0.55 16 36 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 40 H 0.12 1.30 8.05 -52.49 -0.42 0.88 16 41 H 0.12 1.46 6.33 -52.49 -0.33 1.13 16 42 H 0.05 0.53 7.67 -51.93 -0.40 0.14 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 45 H 0.16 3.73 4.87 -52.48 -0.26 3.47 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -28.54 342.19 -9.37 -37.91 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -7.05 Total: 9.40 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -2.31 Total: -24.05 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.05 Total: -39.03 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.20 Total: -5.80 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.54 -9.37 -37.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092383968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.539 kcal (2) G-P(sol) polarization free energy of solvation -28.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds