Wall clock time and date at job start Tue Mar 31 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47432 * 2 1 4 4 H 1.08998 * 109.47385 * 55.12864 * 3 2 1 5 5 C 1.50699 * 109.47249 * 175.13478 * 3 2 1 6 6 H 1.07998 * 120.00483 * 119.99978 * 5 3 2 7 7 C 1.37879 * 119.99758 * 299.99750 * 5 3 2 8 8 N 1.31514 * 119.99942 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47207 * 90.00091 * 9 7 5 11 11 H 1.48498 * 109.47114 * 209.99558 * 9 7 5 12 12 H 1.48500 * 109.47302 * 329.99903 * 9 7 5 13 13 N 1.46907 * 109.47012 * 295.13047 * 3 2 1 14 14 C 1.46896 * 110.99958 * 103.13205 * 13 3 2 15 15 H 1.09007 * 109.24902 * 338.53208 * 14 13 3 16 16 C 1.52728 * 109.25723 * 219.06507 * 14 13 3 17 17 C 1.53321 * 108.37432 * 188.68589 * 16 14 13 18 18 C 1.52728 * 108.37082 * 69.94249 * 17 16 14 19 19 C 1.50650 * 110.56445 * 308.91969 * 18 17 16 20 20 C 1.39034 * 117.63838 * 197.50975 * 19 18 17 21 21 C 1.37832 * 120.61399 * 180.21849 * 20 19 18 22 22 C 1.38763 * 119.70721 * 0.02562 * 21 20 19 23 23 O 1.35903 * 120.17452 * 179.87184 * 22 21 20 24 24 C 1.42903 * 117.00046 * 0.02562 * 23 22 21 25 25 C 1.38420 * 119.65373 * 359.89593 * 22 21 20 26 26 C 1.37633 * 122.59820 * 17.54596 * 19 18 17 27 27 H 1.08997 * 109.47123 * 58.24390 * 1 2 3 28 28 H 1.08997 * 109.47273 * 178.24947 * 1 2 3 29 29 H 1.09002 * 109.46686 * 298.24544 * 1 2 3 30 30 H 1.09005 * 109.47016 * 239.99618 * 2 1 3 31 31 H 1.09005 * 109.47173 * 120.00411 * 2 1 3 32 32 H 0.97004 * 120.00319 * 180.02562 * 8 7 5 33 33 H 1.00904 * 110.99883 * 227.08501 * 13 3 2 34 34 H 1.09001 * 109.68251 * 68.96239 * 16 14 13 35 35 H 1.09010 * 109.68306 * 308.40618 * 16 14 13 36 36 H 1.09005 * 109.68551 * 310.22699 * 17 16 14 37 37 H 1.08997 * 109.69055 * 189.66117 * 17 16 14 38 38 H 1.09001 * 109.25626 * 69.19329 * 18 17 16 39 39 H 1.09002 * 109.24901 * 188.65498 * 18 17 16 40 40 H 1.07999 * 119.70327 * 0.20784 * 20 19 18 41 41 H 1.07994 * 120.14872 * 180.02562 * 21 20 19 42 42 H 1.08998 * 109.46909 * 59.99515 * 24 23 22 43 43 H 1.08996 * 109.47628 * 180.02562 * 24 23 22 44 44 H 1.09003 * 109.47195 * 300.00488 * 24 23 22 45 45 H 1.08004 * 119.74823 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9809 0.8431 5 6 3.5422 1.4441 0.1205 6 1 4.1459 1.8892 -0.6566 7 6 4.1460 0.8773 1.2229 8 7 3.4109 0.3357 2.1695 9 14 6.0080 0.8800 1.3727 10 1 6.4463 2.1124 2.0758 11 1 6.4442 -0.3116 2.1441 12 1 6.6137 0.8413 0.0174 13 7 1.6488 2.1002 -1.2540 14 6 0.5081 3.0012 -1.0421 15 1 -0.0204 2.7049 -0.1359 16 6 -0.4412 2.9010 -2.2343 17 6 -1.5031 3.9988 -2.1002 18 6 -0.8316 5.3497 -2.3384 19 6 0.3957 5.4899 -1.4761 20 6 0.9076 6.7686 -1.2859 21 6 2.0308 6.9670 -0.5121 22 6 2.6571 5.8807 0.0823 23 8 3.7667 6.0652 0.8450 24 6 4.2357 7.4068 0.9942 25 6 2.1461 4.6082 -0.1061 26 6 1.0130 4.4118 -0.8839 27 1 -0.3633 0.5408 -0.8738 28 1 -0.3634 -1.0271 -0.0314 29 1 -0.3633 0.4864 0.9053 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8356 -0.0627 2.9453 33 1 2.4285 2.5937 -1.6620 34 1 -0.9226 1.9231 -2.2391 35 1 0.1165 3.0408 -3.1605 36 1 -1.9325 3.9738 -1.0986 37 1 -2.2877 3.8432 -2.8406 38 1 -0.5451 5.4287 -3.3871 39 1 -1.5338 6.1476 -2.0967 40 1 0.4208 7.6142 -1.7488 41 1 2.4218 7.9635 -0.3690 42 1 3.4579 8.0143 1.4568 43 1 5.1250 7.4129 1.6243 44 1 4.4821 7.8166 0.0146 45 1 2.6321 3.7617 0.3561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092383968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:21 Heat of formation + Delta-G solvation = -45.019452 kcal Electronic energy + Delta-G solvation = -24186.385857 eV Core-core repulsion = 20974.422280 eV Total energy + Delta-G solvation = -3211.963578 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48893 -39.75806 -37.77676 -36.04439 -34.50732 -33.15247 -31.25493 -30.62868 -29.78520 -28.08752 -27.16233 -24.71676 -24.08648 -23.21173 -22.48642 -21.37168 -20.35341 -19.11603 -18.23690 -17.21244 -16.93508 -16.62828 -16.46887 -16.06125 -15.78261 -15.23483 -14.98257 -14.54881 -14.37847 -14.28241 -14.11276 -13.70291 -13.65202 -13.38891 -13.18199 -13.08062 -12.92357 -12.72451 -12.68207 -12.66074 -12.17137 -11.90044 -11.81957 -11.75603 -11.51932 -11.45141 -11.21429 -11.03215 -10.79041 -10.51325 -9.84145 -8.99325 -8.86927 -8.11543 -6.25288 0.39815 0.51805 1.36274 1.37363 1.46893 2.39349 2.44239 2.79000 3.14620 3.66630 3.81170 3.87754 4.03203 4.18912 4.25980 4.34020 4.34862 4.35579 4.41124 4.56694 4.65191 4.65428 4.67792 4.75477 4.83650 4.85542 4.89306 5.09527 5.10916 5.13697 5.15427 5.23230 5.28610 5.42876 5.46546 5.52325 5.55021 5.57379 5.68996 5.74553 5.79406 5.95303 6.00810 6.29231 6.47662 6.56693 6.80938 7.03570 7.43927 8.91452 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.007423 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.969814 B = 3771.246619 C = 5811.763764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C 0.231 3.769 4 H -0.025 1.025 5 C -0.535 4.535 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.269 1.269 13 N -0.673 5.673 14 C 0.128 3.872 15 H 0.056 0.944 16 C -0.097 4.097 17 C -0.116 4.116 18 C -0.068 4.068 19 C -0.114 4.114 20 C -0.085 4.085 21 C -0.205 4.205 22 C 0.102 3.898 23 O -0.350 6.350 24 C 0.020 3.980 25 C -0.183 4.183 26 C -0.073 4.073 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.027 0.973 30 H 0.029 0.971 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.329 0.671 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.160 0.840 41 H 0.153 0.847 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.068 0.932 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.622 14.764 -7.765 18.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.141 4.141 3 C 0.122 3.878 4 H -0.007 1.007 5 C -0.574 4.574 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.194 1.194 13 N -0.302 5.302 14 C 0.018 3.982 15 H 0.074 0.926 16 C -0.135 4.135 17 C -0.154 4.154 18 C -0.105 4.105 19 C -0.115 4.115 20 C -0.102 4.102 21 C -0.223 4.223 22 C 0.057 3.943 23 O -0.265 6.265 24 C -0.074 4.074 25 C -0.202 4.202 26 C -0.074 4.074 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.146 0.854 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.177 0.823 41 H 0.171 0.829 42 H 0.087 0.913 43 H 0.127 0.873 44 H 0.087 0.913 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.867 13.976 -7.694 17.788 hybrid contribution 2.024 0.464 1.331 2.467 sum -5.843 14.440 -6.363 16.827 Atomic orbital electron populations 1.21705 0.96701 1.00260 1.00300 1.21398 0.94199 0.98707 0.99824 1.18912 0.92604 0.91286 0.84954 1.00712 1.21705 0.92983 1.37523 1.05180 0.93263 1.25596 1.02001 0.94882 0.95513 1.70011 1.36262 1.39010 1.09758 0.85704 0.81263 0.77396 0.78191 1.20771 1.20508 1.19396 1.60925 1.09473 1.32039 1.27723 1.20630 0.92952 0.86089 0.98551 0.92611 1.21508 0.95829 0.99411 0.96723 1.21575 0.97615 0.93745 1.02421 1.20460 0.92935 0.98494 0.98615 1.19935 0.99123 0.92021 1.00378 1.21330 0.94909 0.97149 0.96856 1.21413 0.99673 0.98088 1.03128 1.19119 0.87681 0.94458 0.93040 1.86119 1.41639 1.32231 1.66501 1.23307 1.00681 0.80484 1.02936 1.20955 0.99421 0.96206 1.03649 1.20340 0.93970 0.97246 0.95873 0.91843 0.93373 0.95370 0.95231 0.92382 0.92987 0.85376 0.91344 0.91591 0.92522 0.88780 0.89527 0.88797 0.82292 0.82926 0.91344 0.87252 0.91306 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 9.07 71.98 0.65 -4.83 16 2 C -0.10 -5.15 5.45 30.59 0.17 -4.99 16 3 C 0.23 11.98 1.04 44.17 0.05 12.03 16 4 H -0.02 -1.45 6.80 -2.39 -0.02 -1.47 16 5 C -0.54 -30.39 7.48 25.60 0.19 -30.20 16 6 H 0.05 2.81 7.39 -2.91 -0.02 2.79 16 7 C 0.02 1.13 5.29 84.66 0.45 1.58 16 8 N -0.91 -54.08 11.29 21.45 0.24 -53.83 16 9 Si 0.95 45.74 29.54 68.60 2.03 47.77 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.67 -29.49 5.59 -477.70 -2.67 -32.16 16 14 C 0.13 4.77 1.53 44.06 0.07 4.84 16 15 H 0.06 2.33 6.64 -2.38 -0.02 2.31 16 16 C -0.10 -2.77 5.49 30.61 0.17 -2.60 16 17 C -0.12 -2.50 5.98 30.61 0.18 -2.32 16 18 C -0.07 -1.38 5.67 29.74 0.17 -1.21 16 19 C -0.11 -3.19 5.74 -19.83 -0.11 -3.31 16 20 C -0.08 -2.07 9.60 22.36 0.21 -1.85 16 21 C -0.20 -5.61 9.04 22.30 0.20 -5.41 16 22 C 0.10 3.75 6.68 22.44 0.15 3.90 16 23 O -0.35 -12.98 10.50 -92.46 -0.97 -13.95 16 24 C 0.02 0.46 9.82 113.37 1.11 1.58 16 25 C -0.18 -7.79 8.69 22.46 0.20 -7.60 16 26 C -0.07 -2.65 5.30 -19.88 -0.11 -2.75 16 27 H 0.06 2.41 5.48 -2.39 -0.01 2.40 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.06 3.28 5.96 -2.38 -0.01 3.27 16 32 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.33 15.05 6.91 -89.69 -0.62 14.43 16 34 H 0.07 1.95 6.85 -2.39 -0.02 1.94 16 35 H 0.07 1.87 8.10 -2.38 -0.02 1.86 16 36 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 37 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.43 8.12 -2.39 -0.02 1.41 16 40 H 0.16 2.55 8.05 -2.91 -0.02 2.53 16 41 H 0.15 3.09 6.33 -2.91 -0.02 3.08 16 42 H 0.07 1.30 7.67 -2.39 -0.02 1.29 16 43 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.07 1.31 7.67 -2.39 -0.02 1.29 16 45 H 0.11 5.75 4.87 -2.91 -0.01 5.74 16 Total: -1.00 -67.60 342.19 2.74 -64.86 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.37 Total: 30.48 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.75 Total: -43.15 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -2.43 Total: -86.00 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.97 Total: -13.95 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -67.60 2.74 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092383968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.837 kcal (2) G-P(sol) polarization free energy of solvation -67.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds