Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 6 6 C 1.50697 * 109.47229 * 64.99905 * 5 3 2 7 7 O 1.21280 * 120.00114 * 359.97438 * 6 5 3 8 8 N 1.34770 * 120.00201 * 179.97438 * 6 5 3 9 9 C 1.46502 * 119.99850 * 359.97438 * 8 6 5 10 10 C 1.52998 * 109.47074 * 90.00314 * 9 8 6 11 11 C 1.46508 * 120.00236 * 179.97438 * 8 6 5 12 12 C 1.50701 * 109.46866 * 89.99814 * 11 8 6 13 13 H 1.07998 * 120.00140 * 0.02562 * 12 11 8 14 14 C 1.37875 * 119.99839 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00017 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99925 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46496 * 90.00117 * 16 14 12 18 18 H 1.48496 * 109.47069 * 209.99709 * 16 14 12 19 19 H 1.48498 * 109.47320 * 330.00370 * 16 14 12 20 20 C 1.50695 * 109.47196 * 64.99596 * 3 2 1 21 21 C 1.38244 * 119.99684 * 59.73190 * 20 3 2 22 22 C 1.38234 * 119.99307 * 179.78742 * 21 20 3 23 23 C 1.38234 * 120.00518 * 0.43770 * 22 21 20 24 24 C 1.38231 * 119.99689 * 359.81185 * 23 22 21 25 25 C 1.38228 * 120.00390 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 1.09002 * 109.47069 * 184.99753 * 5 3 2 32 32 H 1.08996 * 109.46875 * 304.99826 * 5 3 2 33 33 H 1.09008 * 109.47117 * 209.99825 * 9 8 6 34 34 H 1.08998 * 109.47064 * 329.99888 * 9 8 6 35 35 H 1.08998 * 109.47523 * 59.99855 * 10 9 8 36 36 H 1.09007 * 109.46887 * 180.02562 * 10 9 8 37 37 H 1.09008 * 109.46750 * 299.99736 * 10 9 8 38 38 H 1.09003 * 109.47035 * 209.99678 * 11 8 6 39 39 H 1.08994 * 109.46870 * 329.99934 * 11 8 6 40 40 H 0.97004 * 119.99680 * 180.02562 * 15 14 12 41 41 H 1.07991 * 119.99965 * 359.97438 * 21 20 3 42 42 H 1.08008 * 119.99706 * 180.26970 * 22 21 20 43 43 H 1.07999 * 120.00054 * 179.83622 * 23 22 21 44 44 H 1.08001 * 120.00039 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.00617 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4444 -0.1257 6 6 3.9590 0.8821 -1.4672 7 8 3.1045 0.5156 -2.2458 8 7 5.2610 0.7866 -1.8016 9 6 6.2933 1.2299 -0.8612 10 6 6.7019 0.0600 0.0361 11 6 5.6443 0.2395 -3.1055 12 6 5.7271 1.3562 -4.1141 13 1 5.5158 2.3718 -3.8138 14 6 6.0725 1.0812 -5.4202 15 7 6.1452 2.0558 -6.3003 16 14 6.4385 -0.6755 -5.9395 17 1 5.1848 -1.3284 -6.3948 18 1 7.4244 -0.6682 -7.0500 19 1 6.9972 -1.4263 -4.7865 20 6 1.6413 2.1163 1.2876 21 6 2.0721 1.6049 2.4975 22 6 1.7099 2.2256 3.6784 23 6 0.9095 3.3523 3.6499 24 6 0.4745 3.8606 2.4403 25 6 0.8403 3.2426 1.2592 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.9356 2.4655 -0.0366 32 1 3.9954 0.8312 0.6660 33 1 7.1626 1.5832 -1.4159 34 1 5.9009 2.0398 -0.2463 35 1 7.0943 -0.7499 -0.5788 36 1 7.4696 0.3900 0.7361 37 1 5.8326 -0.2933 0.5909 38 1 6.6154 -0.2488 -3.0235 39 1 4.8984 -0.4869 -3.4281 40 1 6.3879 1.8622 -7.2194 41 1 2.6940 0.7223 2.5200 42 1 2.0501 1.8286 4.6235 43 1 0.6244 3.8356 4.5727 44 1 -0.1511 4.7406 2.4180 45 1 0.5001 3.6395 0.3141 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103535106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -47.220598 kcal Electronic energy + Delta-G solvation = -23339.043614 eV Core-core repulsion = 20126.984587 eV Total energy + Delta-G solvation = -3212.059026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20203 -40.04845 -37.24682 -36.30979 -34.85757 -32.13286 -31.75251 -31.69167 -30.80734 -29.26125 -25.97045 -24.37389 -23.79573 -23.68359 -23.12599 -20.91228 -19.69554 -19.09653 -18.24552 -17.35361 -17.16746 -16.49244 -16.29638 -15.87777 -15.58038 -15.21606 -15.06766 -14.68945 -14.56303 -14.37005 -14.16523 -13.95700 -13.80148 -13.54044 -13.35104 -13.25880 -13.15188 -12.76754 -12.56234 -12.42151 -12.18789 -12.08250 -11.98160 -11.93858 -11.75371 -11.71083 -11.49504 -11.42452 -10.83949 -10.48626 -9.73667 -9.52119 -9.36623 -8.34899 -6.39690 0.52648 0.58289 1.31110 1.35260 1.43756 1.85287 2.29827 2.35172 2.96585 2.99553 3.58990 3.74042 4.04280 4.09974 4.14827 4.20312 4.25041 4.34640 4.37651 4.40819 4.50286 4.58106 4.66106 4.69958 4.71973 4.77237 4.84166 4.93682 4.97473 5.01892 5.02879 5.07660 5.15070 5.22371 5.25655 5.38881 5.40788 5.46700 5.47758 5.67663 5.69582 5.70669 5.84449 6.20374 6.24455 6.61648 6.75926 7.21552 7.48141 8.82245 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.003892 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.054599 B = 7192.938824 C = 7468.999564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.029 4.029 4 H 0.055 0.945 5 C -0.117 4.117 6 C 0.498 3.502 7 O -0.586 6.586 8 N -0.603 5.603 9 C 0.098 3.902 10 C -0.160 4.160 11 C 0.226 3.774 12 C -0.535 4.535 13 H 0.026 0.974 14 C 0.010 3.990 15 N -0.946 5.946 16 Si 0.948 3.052 17 H -0.276 1.276 18 H -0.274 1.274 19 H -0.238 1.238 20 C -0.074 4.074 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.135 4.135 26 H 0.059 0.941 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.018 0.982 40 H 0.268 0.732 41 H 0.134 0.866 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.135 0.865 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 -2.103 24.242 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.048 4.048 4 H 0.073 0.927 5 C -0.156 4.156 6 C 0.287 3.713 7 O -0.467 6.467 8 N -0.334 5.334 9 C -0.025 4.025 10 C -0.218 4.218 11 C 0.104 3.896 12 C -0.574 4.574 13 H 0.045 0.955 14 C -0.188 4.188 15 N -0.586 5.586 16 Si 0.771 3.229 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.161 1.161 20 C -0.074 4.074 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.153 4.153 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.138 0.862 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.151 0.849 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.153 0.847 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.374 -2.252 23.664 24.611 hybrid contribution 0.113 -0.122 -1.421 1.431 sum -6.261 -2.374 22.243 23.229 Atomic orbital electron populations 1.21659 0.95400 1.01575 1.01143 1.21634 0.96560 0.95068 1.02148 1.19849 0.93390 0.96907 0.94608 0.92690 1.21751 0.97039 1.03133 0.93703 1.21303 0.81926 0.78262 0.89780 1.90610 1.50351 1.51339 1.54380 1.48092 1.06320 1.61953 1.16990 1.21754 0.91203 0.98170 0.91335 1.22152 1.02464 0.97777 0.99366 1.19253 0.95482 0.93480 0.81398 1.21584 1.46687 0.94294 0.94820 0.95514 1.25863 0.94541 1.02149 0.96214 1.70057 1.49918 1.34514 1.04160 0.85710 0.78567 0.79342 0.79298 1.20207 1.19948 1.16149 1.19746 0.97767 0.95528 0.94331 1.21181 1.00512 1.00487 0.91630 1.21441 0.97858 0.95877 0.98608 1.21453 0.98201 0.96883 0.98356 1.21360 1.00230 1.00333 0.92372 1.21230 0.99041 0.96182 0.98878 0.92237 0.94281 0.92235 0.90671 0.92682 0.88352 0.86206 0.91277 0.88858 0.93541 0.88817 0.91741 0.93633 0.96440 0.92294 0.84851 0.83797 0.84036 0.84735 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 9.73 71.98 0.70 -2.82 16 2 C -0.12 -3.21 5.08 30.60 0.16 -3.05 16 3 C -0.03 -0.79 1.69 -11.54 -0.02 -0.81 16 4 H 0.05 1.86 7.69 -2.39 -0.02 1.84 16 5 C -0.12 -3.26 3.47 29.85 0.10 -3.15 16 6 C 0.50 20.00 7.35 87.66 0.64 20.65 16 7 O -0.59 -29.00 13.57 -3.03 -0.04 -29.04 16 8 N -0.60 -24.50 2.46 -826.14 -2.03 -26.53 16 9 C 0.10 2.88 5.93 86.38 0.51 3.39 16 10 C -0.16 -3.47 10.24 71.98 0.74 -2.74 16 11 C 0.23 11.19 4.23 85.63 0.36 11.55 16 12 C -0.54 -32.08 9.94 25.60 0.25 -31.83 16 13 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 14 C 0.01 0.61 5.47 84.65 0.46 1.07 16 15 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 16 Si 0.95 45.17 27.47 68.60 1.88 47.05 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 20 C -0.07 -1.67 3.76 -19.87 -0.07 -1.75 16 21 C -0.12 -2.21 8.71 22.27 0.19 -2.01 16 22 C -0.12 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 24 C -0.13 -2.28 10.05 22.27 0.22 -2.05 16 25 C -0.14 -3.03 9.67 22.27 0.22 -2.81 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.35 7.38 -2.38 -0.02 1.34 16 29 H 0.07 1.69 7.21 -2.39 -0.02 1.68 16 30 H 0.05 1.92 5.88 -2.39 -0.01 1.90 16 31 H 0.10 2.57 7.40 -2.39 -0.02 2.56 16 32 H 0.12 2.54 6.63 -2.39 -0.02 2.52 16 33 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 34 H 0.09 2.26 6.44 -2.39 -0.02 2.25 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.06 1.25 7.22 -2.38 -0.02 1.24 16 38 H 0.05 2.08 7.13 -2.39 -0.02 2.07 16 39 H 0.02 0.93 6.85 -2.39 -0.02 0.91 16 40 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 41 H 0.13 2.03 7.13 -2.92 -0.02 2.01 16 42 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 44 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 45 H 0.11 2.60 7.95 -2.91 -0.02 2.58 16 Total: -1.00 -76.79 359.69 5.92 -70.87 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.89 Total: 17.91 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 4.92 Total: -19.81 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.73 Total: -86.97 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.04 Total: -29.04 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.05 kcal Total: -76.79 5.92 -70.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103535106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.647 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds