Wall clock time and date at job start Tue Mar 31 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46827 * 2 1 4 4 N 1.46508 * 109.46922 * 179.97438 * 3 2 1 5 5 C 1.37091 * 120.00086 * 266.10593 * 4 3 2 6 6 H 1.08002 * 120.00331 * 139.48731 * 5 4 3 7 7 C 1.38948 * 120.00219 * 319.48879 * 5 4 3 8 8 N 1.31409 * 120.00010 * 340.30792 * 7 5 4 9 9 Si 1.86804 * 120.00504 * 160.30847 * 7 5 4 10 10 H 1.48501 * 109.46892 * 89.99651 * 9 7 5 11 11 H 1.48493 * 109.47331 * 210.00424 * 9 7 5 12 12 H 1.48508 * 109.46469 * 330.00195 * 9 7 5 13 13 C 1.34779 * 119.99505 * 86.10830 * 4 3 2 14 14 O 1.21295 * 119.99610 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00263 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.46985 * 180.02562 * 15 13 4 17 17 H 1.08999 * 109.47065 * 304.99833 * 16 15 13 18 18 C 1.52992 * 109.47401 * 65.00057 * 16 15 13 19 19 C 1.50704 * 109.46956 * 185.00210 * 16 15 13 20 20 C 1.38256 * 119.99801 * 302.22550 * 19 16 15 21 21 C 1.38216 * 120.00226 * 179.97438 * 20 19 16 22 22 C 1.38258 * 119.99546 * 359.85718 * 21 20 19 23 23 C 1.38219 * 120.00208 * 0.39584 * 22 21 20 24 24 C 1.38208 * 119.99998 * 122.24801 * 19 16 15 25 25 C 1.50698 * 120.00225 * 359.97438 * 24 19 16 26 26 H 1.08999 * 109.47054 * 60.00388 * 1 2 3 27 27 H 1.09000 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47350 * 299.99891 * 1 2 3 29 29 H 1.08997 * 109.47350 * 240.00108 * 2 1 3 30 30 H 1.08999 * 109.47054 * 119.99612 * 2 1 3 31 31 H 1.09004 * 109.47071 * 60.00345 * 3 2 1 32 32 H 1.08991 * 109.47269 * 299.99756 * 3 2 1 33 33 H 0.97001 * 120.00190 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47169 * 60.00157 * 15 13 4 35 35 H 1.09001 * 109.47168 * 300.00277 * 15 13 4 36 36 H 1.09000 * 109.47791 * 180.02562 * 18 16 15 37 37 H 1.09001 * 109.47456 * 300.00095 * 18 16 15 38 38 H 1.08999 * 109.47194 * 59.99854 * 18 16 15 39 39 H 1.08006 * 120.00277 * 0.02562 * 20 19 16 40 40 H 1.07997 * 120.00348 * 180.02562 * 21 20 19 41 41 H 1.07993 * 119.99942 * 180.21236 * 22 21 20 42 42 H 1.07991 * 120.00391 * 179.81093 * 23 22 21 43 43 H 1.09000 * 109.46917 * 274.85035 * 25 24 19 44 44 H 1.09000 * 109.47146 * 34.84047 * 25 24 19 45 45 H 1.09002 * 109.47422 * 154.84647 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5234 1.1854 6 1 5.0758 0.9249 1.3390 7 6 3.7447 2.3753 2.1887 8 7 2.9334 3.3669 1.8965 9 14 4.2992 2.1111 3.9529 10 1 5.5474 2.8769 4.1993 11 1 3.2390 2.5806 4.8805 12 1 4.5521 0.6656 4.1809 13 6 4.1793 1.3632 -1.1637 14 8 5.3923 1.3627 -1.1632 15 6 3.4263 1.2738 -2.4660 16 6 4.4211 1.1942 -3.6258 17 1 5.1051 2.0414 -3.5765 18 6 5.2158 -0.1094 -3.5275 19 6 3.6722 1.2287 -4.9331 20 6 2.7091 0.2743 -5.2034 21 6 2.0218 0.3061 -6.4021 22 6 2.2954 1.2942 -7.3297 23 6 3.2619 2.2453 -7.0617 24 6 3.9484 2.2141 -5.8620 25 6 4.9981 3.2544 -5.5674 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 2.6223 3.9615 2.5970 34 1 2.7994 2.1575 -2.5845 35 1 2.8000 0.3817 -2.4631 36 1 5.9248 -0.1660 -4.3535 37 1 5.7575 -0.1344 -2.5820 38 1 4.5318 -0.9566 -3.5768 39 1 2.4931 -0.4958 -4.4775 40 1 1.2692 -0.4392 -6.6131 41 1 1.7560 1.3212 -8.2649 42 1 3.4777 3.0152 -7.7875 43 1 4.5526 4.0681 -4.9950 44 1 5.8048 2.8032 -4.9896 45 1 5.3962 3.6445 -6.5041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116178495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:20 Heat of formation + Delta-G solvation = -31.313500 kcal Electronic energy + Delta-G solvation = -23625.642046 eV Core-core repulsion = 20414.272803 eV Total energy + Delta-G solvation = -3211.369243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.77722 -38.48329 -35.54465 -34.39793 -32.77584 -32.53059 -31.15032 -29.62796 -27.53098 -26.71206 -25.70980 -24.32892 -23.27559 -21.38224 -20.95604 -19.91304 -18.43853 -16.87586 -16.53497 -15.69389 -15.48403 -14.94190 -14.57287 -14.32969 -14.18529 -13.82051 -13.66772 -13.44713 -12.97657 -12.88751 -12.60777 -12.58540 -12.27993 -12.01138 -11.82032 -11.64111 -11.47478 -11.34858 -11.23606 -11.09743 -10.98151 -10.65155 -10.63804 -10.34822 -10.32846 -10.22158 -10.04918 -9.86894 -8.87938 -8.66553 -8.42403 -8.22547 -7.35672 -6.28425 -3.95124 1.48856 1.51563 3.19421 3.27598 3.32557 3.87421 3.99042 4.19516 4.77659 4.92194 4.99206 5.04371 5.12470 5.16862 5.39729 5.45715 5.57533 5.59966 5.62683 5.72297 5.74182 5.76966 5.83787 5.92974 5.96607 6.10665 6.13727 6.20387 6.24610 6.27232 6.34779 6.38992 6.49292 6.50737 6.53109 6.60758 6.62280 6.68865 6.89148 6.94105 6.98563 7.16216 7.26841 7.62209 8.34634 8.57371 9.25550 9.46365 10.09382 10.76568 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.004412 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.176744 B = 6345.188822 C = 6991.799270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.109 3.891 4 N -0.443 5.443 5 C -0.308 4.308 6 H 0.087 0.913 7 C 0.039 3.961 8 N -0.871 5.871 9 Si 0.914 3.086 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.464 3.536 14 O -0.578 6.578 15 C -0.125 4.125 16 C -0.041 4.041 17 H 0.089 0.911 18 C -0.144 4.144 19 C -0.066 4.066 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.083 4.083 25 C -0.120 4.120 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -3.970 -13.196 14.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.016 4.016 4 N -0.162 5.162 5 C -0.436 4.436 6 H 0.104 0.896 7 C -0.165 4.165 8 N -0.509 5.509 9 Si 0.740 3.260 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.252 3.748 14 O -0.462 6.462 15 C -0.165 4.165 16 C -0.059 4.059 17 H 0.108 0.892 18 C -0.201 4.201 19 C -0.066 4.066 20 C -0.129 4.129 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.140 4.140 24 C -0.083 4.083 25 C -0.176 4.176 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.209 -3.805 -13.063 14.242 hybrid contribution -0.147 0.003 0.816 0.829 sum -4.356 -3.802 -12.247 13.543 Atomic orbital electron populations 1.21683 0.96424 1.00643 1.01546 1.21976 0.94805 0.99418 1.01661 1.21518 0.82460 0.94219 1.03374 1.43448 1.04309 1.63732 1.04721 1.19334 1.11481 1.22769 0.90063 0.89552 1.25380 0.97140 0.93564 1.00424 1.69946 1.34013 1.13480 1.33430 0.86147 0.78369 0.78933 0.82517 1.20327 1.20890 1.19434 1.20341 0.88096 0.81400 0.84917 1.90468 1.14115 1.54616 1.86978 1.21683 0.98456 1.02661 0.93717 1.19974 0.96051 1.00621 0.89267 0.89246 1.21913 0.99600 0.95243 1.03317 1.19955 0.96336 0.94362 0.95913 1.21023 0.96144 0.98779 0.96955 1.21071 1.00158 0.98910 0.94362 1.21031 0.98555 0.95769 0.99358 1.20976 0.97072 0.99199 0.96769 1.19827 0.97924 0.96532 0.94017 1.20876 0.97426 0.97383 1.01944 0.93175 0.93482 0.92775 0.93195 0.91727 0.87960 0.93425 0.92378 0.90421 0.90573 0.93704 0.89601 0.93758 0.86151 0.86503 0.86612 0.86492 0.90975 0.90676 0.91982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.14 -2.51 6.19 -26.73 -0.17 -2.67 16 3 C 0.11 2.34 4.72 -4.04 -0.02 2.32 16 4 N -0.44 -11.12 2.50 -114.81 -0.29 -11.40 16 5 C -0.31 -8.52 8.84 -14.94 -0.13 -8.65 16 6 H 0.09 2.49 7.82 -52.49 -0.41 2.08 16 7 C 0.04 1.04 4.93 -17.47 -0.09 0.95 16 8 N -0.87 -23.63 11.64 55.50 0.65 -22.98 16 9 Si 0.91 20.65 29.60 -169.99 -5.03 15.62 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 13 C 0.46 11.13 7.32 -10.99 -0.08 11.05 16 14 O -0.58 -15.55 13.87 5.54 0.08 -15.47 16 15 C -0.12 -2.33 3.49 -27.88 -0.10 -2.43 16 16 C -0.04 -0.69 1.98 -91.77 -0.18 -0.87 16 17 H 0.09 1.63 5.43 -51.93 -0.28 1.35 16 18 C -0.14 -2.40 8.77 37.15 0.33 -2.07 16 19 C -0.07 -0.97 4.78 -104.62 -0.50 -1.47 16 20 C -0.11 -1.50 8.76 -39.58 -0.35 -1.85 16 21 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 22 C -0.13 -1.48 10.05 -39.58 -0.40 -1.87 16 23 C -0.12 -1.48 9.68 -39.58 -0.38 -1.86 16 24 C -0.08 -1.14 5.88 -104.63 -0.62 -1.76 16 25 C -0.12 -1.50 9.21 36.00 0.33 -1.17 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.85 6.75 -51.93 -0.35 0.50 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.10 2.45 5.74 -51.93 -0.30 2.15 16 32 H 0.05 0.96 6.60 -51.93 -0.34 0.62 16 33 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.08 1.44 7.41 -51.93 -0.38 1.05 16 35 H 0.08 1.29 5.99 -51.93 -0.31 0.98 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.69 5.95 -51.93 -0.31 1.38 16 38 H 0.04 0.67 7.52 -51.93 -0.39 0.28 16 39 H 0.12 1.53 7.17 -52.48 -0.38 1.16 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.00 6.42 -51.93 -0.33 0.67 16 45 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -30.18 355.68 -8.76 -38.94 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.15 Total: 5.94 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -2.38 Total: -15.99 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.36 Total: -34.39 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.08 Total: -15.47 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.18 -8.76 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116178495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.622 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds