Wall clock time and date at job start Tue Mar 31 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46827 * 2 1 4 4 N 1.46508 * 109.46922 * 179.97438 * 3 2 1 5 5 C 1.37091 * 120.00086 * 266.10593 * 4 3 2 6 6 H 1.08002 * 120.00331 * 139.48731 * 5 4 3 7 7 C 1.38948 * 120.00219 * 319.48879 * 5 4 3 8 8 N 1.31409 * 120.00010 * 340.30792 * 7 5 4 9 9 Si 1.86804 * 120.00504 * 160.30847 * 7 5 4 10 10 H 1.48501 * 109.46892 * 89.99651 * 9 7 5 11 11 H 1.48493 * 109.47331 * 210.00424 * 9 7 5 12 12 H 1.48508 * 109.46469 * 330.00195 * 9 7 5 13 13 C 1.34779 * 119.99505 * 86.10830 * 4 3 2 14 14 O 1.21295 * 119.99610 * 180.02562 * 13 4 3 15 15 C 1.50697 * 120.00263 * 359.97438 * 13 4 3 16 16 C 1.53003 * 109.46985 * 180.02562 * 15 13 4 17 17 H 1.08999 * 109.47065 * 304.99833 * 16 15 13 18 18 C 1.52992 * 109.47401 * 65.00057 * 16 15 13 19 19 C 1.50704 * 109.46956 * 185.00210 * 16 15 13 20 20 C 1.38256 * 119.99801 * 302.22550 * 19 16 15 21 21 C 1.38216 * 120.00226 * 179.97438 * 20 19 16 22 22 C 1.38258 * 119.99546 * 359.85718 * 21 20 19 23 23 C 1.38219 * 120.00208 * 0.39584 * 22 21 20 24 24 C 1.38208 * 119.99998 * 122.24801 * 19 16 15 25 25 C 1.50698 * 120.00225 * 359.97438 * 24 19 16 26 26 H 1.08999 * 109.47054 * 60.00388 * 1 2 3 27 27 H 1.09000 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47350 * 299.99891 * 1 2 3 29 29 H 1.08997 * 109.47350 * 240.00108 * 2 1 3 30 30 H 1.08999 * 109.47054 * 119.99612 * 2 1 3 31 31 H 1.09004 * 109.47071 * 60.00345 * 3 2 1 32 32 H 1.08991 * 109.47269 * 299.99756 * 3 2 1 33 33 H 0.97001 * 120.00190 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47169 * 60.00157 * 15 13 4 35 35 H 1.09001 * 109.47168 * 300.00277 * 15 13 4 36 36 H 1.09000 * 109.47791 * 180.02562 * 18 16 15 37 37 H 1.09001 * 109.47456 * 300.00095 * 18 16 15 38 38 H 1.08999 * 109.47194 * 59.99854 * 18 16 15 39 39 H 1.08006 * 120.00277 * 0.02562 * 20 19 16 40 40 H 1.07997 * 120.00348 * 180.02562 * 21 20 19 41 41 H 1.07993 * 119.99942 * 180.21236 * 22 21 20 42 42 H 1.07991 * 120.00391 * 179.81093 * 23 22 21 43 43 H 1.09000 * 109.46917 * 274.85035 * 25 24 19 44 44 H 1.09000 * 109.47146 * 34.84047 * 25 24 19 45 45 H 1.09002 * 109.47422 * 154.84647 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5234 1.1854 6 1 5.0758 0.9249 1.3390 7 6 3.7447 2.3753 2.1887 8 7 2.9334 3.3669 1.8965 9 14 4.2992 2.1111 3.9529 10 1 5.5474 2.8769 4.1993 11 1 3.2390 2.5806 4.8805 12 1 4.5521 0.6656 4.1809 13 6 4.1793 1.3632 -1.1637 14 8 5.3923 1.3627 -1.1632 15 6 3.4263 1.2738 -2.4660 16 6 4.4211 1.1942 -3.6258 17 1 5.1051 2.0414 -3.5765 18 6 5.2158 -0.1094 -3.5275 19 6 3.6722 1.2287 -4.9331 20 6 2.7091 0.2743 -5.2034 21 6 2.0218 0.3061 -6.4021 22 6 2.2954 1.2942 -7.3297 23 6 3.2619 2.2453 -7.0617 24 6 3.9484 2.2141 -5.8620 25 6 4.9981 3.2544 -5.5674 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 2.6223 3.9615 2.5970 34 1 2.7994 2.1575 -2.5845 35 1 2.8000 0.3817 -2.4631 36 1 5.9248 -0.1660 -4.3535 37 1 5.7575 -0.1344 -2.5820 38 1 4.5318 -0.9566 -3.5768 39 1 2.4931 -0.4958 -4.4775 40 1 1.2692 -0.4392 -6.6131 41 1 1.7560 1.3212 -8.2649 42 1 3.4777 3.0152 -7.7875 43 1 4.5526 4.0681 -4.9950 44 1 5.8048 2.8032 -4.9896 45 1 5.3962 3.6445 -6.5041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116178495.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:19 Heat of formation + Delta-G solvation = -45.673500 kcal Electronic energy + Delta-G solvation = -23626.264743 eV Core-core repulsion = 20414.272803 eV Total energy + Delta-G solvation = -3211.991939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.04895 -40.07052 -37.26564 -35.82281 -34.49956 -33.55406 -32.96583 -30.76117 -29.10805 -27.69409 -27.36535 -26.08483 -24.49273 -22.55434 -22.34652 -21.22621 -20.08766 -18.76437 -18.00378 -17.14091 -16.75739 -16.65823 -15.98209 -15.82220 -15.56018 -15.33955 -14.87525 -14.81429 -14.35761 -14.04374 -14.03948 -13.88588 -13.49305 -13.35826 -13.24474 -13.14776 -13.00930 -12.81619 -12.68304 -12.58615 -12.28717 -12.12148 -12.08228 -12.00221 -11.95857 -11.52709 -11.49744 -11.30748 -10.86057 -10.20318 -9.61422 -9.39783 -9.33924 -8.32037 -6.06765 0.51811 0.56217 1.37018 1.40164 1.52641 2.10752 2.30864 2.90105 3.02390 3.12706 3.78882 3.85635 4.10671 4.13311 4.15536 4.20458 4.28920 4.33239 4.36969 4.49929 4.54220 4.60911 4.67498 4.72203 4.77884 4.78126 4.86752 4.91335 4.97872 4.99067 5.07994 5.15101 5.22181 5.29618 5.32950 5.36070 5.40716 5.44707 5.50556 5.59587 5.67952 5.70745 5.88435 6.21547 6.26412 6.59525 7.23065 7.51966 8.14047 8.71529 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020282 B = 0.004412 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.176744 B = 6345.188822 C = 6991.799270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.111 3.889 4 N -0.458 5.458 5 C -0.340 4.340 6 H 0.060 0.940 7 C 0.005 3.995 8 N -0.892 5.892 9 Si 0.977 3.023 10 H -0.279 1.279 11 H -0.268 1.268 12 H -0.266 1.266 13 C 0.451 3.549 14 O -0.618 6.618 15 C -0.108 4.108 16 C -0.034 4.034 17 H 0.067 0.933 18 C -0.137 4.137 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.099 4.099 25 C -0.119 4.119 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.272 0.728 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.125 0.875 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.849 -4.639 -14.952 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C -0.013 4.013 4 N -0.176 5.176 5 C -0.468 4.468 6 H 0.078 0.922 7 C -0.197 4.197 8 N -0.530 5.530 9 Si 0.800 3.200 10 H -0.205 1.205 11 H -0.192 1.192 12 H -0.191 1.191 13 C 0.241 3.759 14 O -0.504 6.504 15 C -0.148 4.148 16 C -0.052 4.052 17 H 0.085 0.915 18 C -0.194 4.194 19 C -0.084 4.084 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.099 4.099 25 C -0.175 4.175 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.157 0.843 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.376 -4.475 -14.825 16.747 hybrid contribution 0.531 0.241 1.287 1.413 sum -5.845 -4.233 -13.538 15.341 Atomic orbital electron populations 1.21633 0.93340 1.02442 1.02093 1.21872 0.97353 0.96527 1.01236 1.21588 0.80434 0.96604 1.02642 1.43742 1.05760 1.63695 1.04452 1.19304 1.11852 1.23616 0.92065 0.92183 1.26100 0.97010 0.92843 1.03790 1.70012 1.34473 1.13759 1.34720 0.85208 0.78072 0.78867 0.77835 1.20543 1.19235 1.19072 1.21250 0.88050 0.80223 0.86407 1.90437 1.16059 1.56100 1.87816 1.21577 0.98404 1.03581 0.91224 1.19813 0.95516 0.99733 0.90167 0.91456 1.21803 0.99883 0.95978 1.01708 1.19758 0.97531 0.96106 0.95045 1.21157 0.96104 0.98582 0.98046 1.21400 1.00100 0.99470 0.93534 1.21443 0.97856 0.94770 1.00266 1.21274 0.96753 0.99937 0.96342 1.20006 0.98593 0.96553 0.94776 1.20860 0.96891 0.97031 1.02734 0.91655 0.91042 0.93238 0.92166 0.93613 0.90437 0.92200 0.91875 0.90177 0.88461 0.92503 0.93242 0.92124 0.85672 0.83900 0.83623 0.84264 0.91681 0.92355 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.61 6.19 30.60 0.19 -4.42 16 3 C 0.11 4.82 4.72 86.38 0.41 5.23 16 4 N -0.46 -23.77 2.50 -635.53 -1.59 -25.36 16 5 C -0.34 -19.59 8.84 84.04 0.74 -18.85 16 6 H 0.06 3.69 7.82 -2.91 -0.02 3.66 16 7 C 0.00 0.27 4.93 84.93 0.42 0.69 16 8 N -0.89 -49.18 11.64 21.66 0.25 -48.93 16 9 Si 0.98 43.06 29.60 68.60 2.03 45.09 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 12 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 13 C 0.45 22.50 7.32 87.66 0.64 23.14 16 14 O -0.62 -35.23 13.87 -3.08 -0.04 -35.27 16 15 C -0.11 -4.06 3.49 29.85 0.10 -3.96 16 16 C -0.03 -1.16 1.98 -11.54 -0.02 -1.18 16 17 H 0.07 2.60 5.43 -2.39 -0.01 2.58 16 18 C -0.14 -4.65 8.77 71.98 0.63 -4.02 16 19 C -0.08 -2.41 4.78 -19.87 -0.09 -2.51 16 20 C -0.12 -2.99 8.76 22.27 0.20 -2.79 16 21 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 22 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.13 -2.66 9.68 22.27 0.22 -2.45 16 24 C -0.10 -2.60 5.88 -19.87 -0.12 -2.72 16 25 C -0.12 -2.96 9.21 71.24 0.66 -2.31 16 26 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.97 6.75 -2.39 -0.02 1.95 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.08 3.78 5.74 -2.39 -0.01 3.76 16 32 H 0.06 2.40 6.60 -2.39 -0.02 2.38 16 33 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.08 2.97 7.41 -2.39 -0.02 2.95 16 35 H 0.10 3.21 5.99 -2.39 -0.01 3.20 16 36 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.05 2.05 5.95 -2.39 -0.01 2.03 16 38 H 0.06 1.81 7.52 -2.39 -0.02 1.79 16 39 H 0.13 2.88 7.17 -2.91 -0.02 2.86 16 40 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.14 2.27 8.06 -2.92 -0.02 2.25 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.06 1.62 6.42 -2.39 -0.02 1.61 16 45 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 Total: -1.00 -68.24 355.68 6.74 -61.50 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.96 Total: 26.57 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 5.13 Total: -23.59 kcal Atomic # 7 Polarization: -72.96 SS G_CDS: -1.34 Total: -74.30 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.04 Total: -35.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.24 6.74 -61.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116178495.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.828 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds