Wall clock time and date at job start Tue Mar 31 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47025 * 2 1 4 4 N 1.46499 * 109.47167 * 179.97438 * 3 2 1 5 5 C 1.37105 * 119.99850 * 264.74770 * 4 3 2 6 6 H 1.07992 * 119.99846 * 146.16785 * 5 4 3 7 7 C 1.38946 * 119.99735 * 326.16340 * 5 4 3 8 8 N 1.31416 * 120.00273 * 337.67908 * 7 5 4 9 9 Si 1.86799 * 119.99691 * 157.68281 * 7 5 4 10 10 H 1.48503 * 109.47190 * 89.99888 * 9 7 5 11 11 H 1.48505 * 109.47312 * 209.99653 * 9 7 5 12 12 H 1.48498 * 109.47247 * 329.99752 * 9 7 5 13 13 C 1.34778 * 120.00122 * 84.74644 * 4 3 2 14 14 O 1.21289 * 119.99993 * 180.02562 * 13 4 3 15 15 C 1.50690 * 119.99923 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47138 * 180.02562 * 15 13 4 17 17 C 1.50702 * 109.47307 * 179.97438 * 16 15 13 18 18 C 1.38229 * 120.00440 * 269.72961 * 17 16 15 19 19 C 1.38231 * 120.00292 * 179.76083 * 18 17 16 20 20 C 1.50701 * 120.00179 * 180.22584 * 19 18 17 21 21 C 1.38230 * 119.99920 * 0.51217 * 19 18 17 22 22 C 1.38242 * 120.00200 * 359.74117 * 21 19 18 23 23 C 1.50697 * 120.00488 * 179.97438 * 22 21 19 24 24 C 1.38235 * 119.99418 * 0.02562 * 22 21 19 25 25 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47423 * 300.00632 * 1 2 3 27 27 H 1.09007 * 109.46555 * 60.00353 * 1 2 3 28 28 H 1.08993 * 109.47081 * 239.99692 * 2 1 3 29 29 H 1.09004 * 109.46602 * 119.99113 * 2 1 3 30 30 H 1.09004 * 109.47535 * 59.99437 * 3 2 1 31 31 H 1.09007 * 109.47166 * 299.99272 * 3 2 1 32 32 H 0.96997 * 119.99657 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47288 * 60.00114 * 15 13 4 34 34 H 1.09001 * 109.47577 * 299.99931 * 15 13 4 35 35 H 1.09004 * 109.46977 * 60.00233 * 16 15 13 36 36 H 1.08994 * 109.47372 * 300.00076 * 16 15 13 37 37 H 1.08003 * 119.99880 * 359.97438 * 18 17 16 38 38 H 1.08999 * 109.47689 * 270.28418 * 20 19 18 39 39 H 1.09001 * 109.46807 * 30.28638 * 20 19 18 40 40 H 1.09004 * 109.47205 * 150.28211 * 20 19 18 41 41 H 1.07998 * 120.00341 * 179.71685 * 21 19 18 42 42 H 1.08998 * 109.47193 * 270.02205 * 23 22 21 43 43 H 1.09006 * 109.46688 * 30.01895 * 23 22 21 44 44 H 1.08995 * 109.47091 * 150.02056 * 23 22 21 45 45 H 1.07995 * 119.99718 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5514 1.1833 6 1 5.1327 1.0401 1.3103 7 6 3.6712 2.3196 2.2183 8 7 2.8001 3.2688 1.9594 9 14 4.2121 2.0030 3.9781 10 1 5.4016 2.8365 4.2878 11 1 3.1071 2.3532 4.9063 12 1 4.5578 0.5679 4.1391 13 6 4.1794 1.3355 -1.1614 14 8 5.3923 1.3350 -1.1608 15 6 3.4265 1.2163 -2.4613 16 6 4.4213 1.1089 -3.6188 17 6 3.6683 0.9892 -4.9188 18 6 3.3274 -0.2580 -5.4077 19 6 2.6324 -0.3676 -6.5976 20 6 2.2562 -1.7271 -7.1281 21 6 2.2877 0.7695 -7.3040 22 6 2.6333 2.0166 -6.8177 23 6 2.2580 3.2563 -7.5880 24 6 3.3240 2.1263 -5.6253 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 2.4377 3.8048 2.6820 33 1 2.8002 2.0975 -2.6005 34 1 2.7995 0.3250 -2.4377 35 1 5.0472 0.2275 -3.4794 36 1 5.0486 1.9999 -3.6427 37 1 3.6009 -1.1467 -4.8583 38 1 3.0560 -2.1021 -7.7666 39 1 2.1048 -2.4131 -6.2947 40 1 1.3357 -1.6494 -7.7066 41 1 1.7488 0.6837 -8.2359 42 1 3.0579 3.5073 -8.2846 43 1 1.3372 3.0747 -8.1423 44 1 2.1075 4.0834 -6.8943 45 1 3.5943 3.1005 -5.2456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121946431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:08 Heat of formation + Delta-G solvation = -39.685140 kcal Electronic energy + Delta-G solvation = -22911.031041 eV Core-core repulsion = 19699.298776 eV Total energy + Delta-G solvation = -3211.732264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.61930 -38.51762 -35.35303 -34.06732 -33.49568 -32.71975 -31.16759 -29.93403 -27.35431 -26.63415 -25.98482 -25.02083 -23.41869 -20.95803 -20.67748 -20.20056 -18.59134 -16.82942 -16.27794 -15.88795 -15.76773 -14.90336 -14.41527 -14.30736 -14.11033 -14.00453 -13.74156 -13.28467 -13.09316 -12.98703 -12.80317 -12.59895 -12.51945 -12.30795 -11.96965 -11.80601 -11.61674 -11.39302 -11.25983 -11.12954 -11.00642 -10.87538 -10.69862 -10.60490 -10.46894 -10.31318 -10.15547 -9.86123 -8.90586 -8.55952 -8.46959 -8.23629 -7.43801 -6.29819 -3.90221 1.45276 1.47263 3.18558 3.27311 3.33071 3.79134 3.96947 4.18939 4.76054 4.80251 4.82922 4.99264 5.11031 5.20683 5.30405 5.36633 5.48850 5.52825 5.54956 5.60353 5.63231 5.65998 5.73159 5.73918 5.79169 5.83148 5.86717 6.04006 6.15648 6.19847 6.24593 6.35463 6.37766 6.45425 6.52254 6.61723 6.64584 6.65173 6.67930 6.88948 6.96476 7.14891 7.32922 7.62922 8.28808 8.55773 9.23482 9.47250 10.07487 10.73811 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.003663 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.175683 B = 7642.194061 C = 7949.248713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.102 3.898 4 N -0.442 5.442 5 C -0.307 4.307 6 H 0.091 0.909 7 C 0.035 3.965 8 N -0.870 5.870 9 Si 0.915 3.085 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.456 3.544 14 O -0.585 6.585 15 C -0.125 4.125 16 C -0.064 4.064 17 C -0.062 4.062 18 C -0.124 4.124 19 C -0.085 4.085 20 C -0.112 4.112 21 C -0.133 4.133 22 C -0.084 4.084 23 C -0.113 4.113 24 C -0.123 4.123 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.267 0.733 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.504 -4.892 -15.143 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.023 4.023 4 N -0.161 5.161 5 C -0.435 4.435 6 H 0.109 0.891 7 C -0.168 4.168 8 N -0.508 5.508 9 Si 0.741 3.259 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.245 3.755 14 O -0.470 6.470 15 C -0.165 4.165 16 C -0.101 4.101 17 C -0.062 4.062 18 C -0.142 4.142 19 C -0.085 4.085 20 C -0.169 4.169 21 C -0.151 4.151 22 C -0.084 4.084 23 C -0.170 4.170 24 C -0.141 4.141 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.134 0.866 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.016 -4.740 -15.006 16.848 hybrid contribution 0.003 -0.020 0.907 0.907 sum -6.013 -4.760 -14.099 16.050 Atomic orbital electron populations 1.21676 0.96393 1.00617 1.01542 1.21973 0.94856 0.99430 1.01603 1.21658 0.82080 0.94421 1.04108 1.43528 1.04591 1.62973 1.04970 1.19444 1.06721 1.28337 0.88963 0.89132 1.25300 0.97354 0.93760 1.00419 1.69928 1.31096 1.16997 1.32815 0.86129 0.78274 0.79114 0.82368 1.20332 1.20831 1.19443 1.20330 0.88061 0.82192 0.84938 1.90506 1.14185 1.55311 1.86971 1.21576 0.98609 1.02814 0.93537 1.20342 0.96614 1.03975 0.89212 1.20075 0.96999 0.92875 0.96218 1.20944 0.99871 0.97273 0.96094 1.19851 0.98168 0.95290 0.95154 1.20768 1.01299 0.93648 1.01187 1.20793 1.02594 0.91658 1.00016 1.19865 0.98108 0.94942 0.95474 1.20773 1.01293 0.95211 0.99677 1.20976 0.99751 0.98477 0.94908 0.93503 0.92757 0.93185 0.93214 0.91802 0.86881 0.93494 0.92316 0.90320 0.90514 0.90584 0.90464 0.86194 0.91416 0.91556 0.91814 0.86631 0.91395 0.91811 0.91482 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.14 -2.57 6.17 -26.73 -0.16 -2.74 16 3 C 0.10 2.23 4.71 -4.05 -0.02 2.21 16 4 N -0.44 -11.31 2.56 -114.82 -0.29 -11.60 16 5 C -0.31 -8.60 8.98 -14.93 -0.13 -8.73 16 6 H 0.09 2.66 7.70 -52.49 -0.40 2.26 16 7 C 0.04 0.94 4.92 -17.47 -0.09 0.85 16 8 N -0.87 -23.51 11.33 55.50 0.63 -22.88 16 9 Si 0.91 20.71 29.61 -169.99 -5.03 15.68 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 C 0.46 11.26 7.59 -10.99 -0.08 11.18 16 14 O -0.59 -16.45 15.80 5.55 0.09 -16.36 16 15 C -0.13 -2.37 4.29 -27.89 -0.12 -2.49 16 16 C -0.06 -1.09 4.64 -27.88 -0.13 -1.22 16 17 C -0.06 -0.91 5.13 -104.62 -0.54 -1.45 16 18 C -0.12 -1.68 9.36 -39.59 -0.37 -2.05 16 19 C -0.08 -1.02 5.88 -104.63 -0.62 -1.63 16 20 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 21 C -0.13 -1.55 9.36 -39.58 -0.37 -1.92 16 22 C -0.08 -1.02 5.88 -104.62 -0.62 -1.64 16 23 C -0.11 -1.06 10.01 36.00 0.36 -0.70 16 24 C -0.12 -1.71 9.36 -39.58 -0.37 -2.08 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.87 6.59 -51.93 -0.34 0.53 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.11 2.74 5.34 -51.93 -0.28 2.47 16 31 H 0.05 0.96 6.66 -51.93 -0.35 0.61 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.08 1.44 7.41 -51.93 -0.38 1.05 16 34 H 0.08 1.34 6.54 -51.93 -0.34 1.00 16 35 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 36 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 37 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 44 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 45 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 366.83 15.07 5.53 5.53 Total: -1.00 -31.05 366.83 -9.16 -40.21 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.55 Total: 4.29 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.53 Total: -14.85 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.34 Total: -34.48 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: 0.09 Total: -16.36 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.05 -9.16 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121946431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.521 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds