Wall clock time and date at job start Tue Mar 31 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47025 * 2 1 4 4 N 1.46499 * 109.47167 * 179.97438 * 3 2 1 5 5 C 1.37105 * 119.99850 * 264.74770 * 4 3 2 6 6 H 1.07992 * 119.99846 * 146.16785 * 5 4 3 7 7 C 1.38946 * 119.99735 * 326.16340 * 5 4 3 8 8 N 1.31416 * 120.00273 * 337.67908 * 7 5 4 9 9 Si 1.86799 * 119.99691 * 157.68281 * 7 5 4 10 10 H 1.48503 * 109.47190 * 89.99888 * 9 7 5 11 11 H 1.48505 * 109.47312 * 209.99653 * 9 7 5 12 12 H 1.48498 * 109.47247 * 329.99752 * 9 7 5 13 13 C 1.34778 * 120.00122 * 84.74644 * 4 3 2 14 14 O 1.21289 * 119.99993 * 180.02562 * 13 4 3 15 15 C 1.50690 * 119.99923 * 0.02562 * 13 4 3 16 16 C 1.53005 * 109.47138 * 180.02562 * 15 13 4 17 17 C 1.50702 * 109.47307 * 179.97438 * 16 15 13 18 18 C 1.38229 * 120.00440 * 269.72961 * 17 16 15 19 19 C 1.38231 * 120.00292 * 179.76083 * 18 17 16 20 20 C 1.50701 * 120.00179 * 180.22584 * 19 18 17 21 21 C 1.38230 * 119.99920 * 0.51217 * 19 18 17 22 22 C 1.38242 * 120.00200 * 359.74117 * 21 19 18 23 23 C 1.50697 * 120.00488 * 179.97438 * 22 21 19 24 24 C 1.38235 * 119.99418 * 0.02562 * 22 21 19 25 25 H 1.08999 * 109.47039 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47423 * 300.00632 * 1 2 3 27 27 H 1.09007 * 109.46555 * 60.00353 * 1 2 3 28 28 H 1.08993 * 109.47081 * 239.99692 * 2 1 3 29 29 H 1.09004 * 109.46602 * 119.99113 * 2 1 3 30 30 H 1.09004 * 109.47535 * 59.99437 * 3 2 1 31 31 H 1.09007 * 109.47166 * 299.99272 * 3 2 1 32 32 H 0.96997 * 119.99657 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47288 * 60.00114 * 15 13 4 34 34 H 1.09001 * 109.47577 * 299.99931 * 15 13 4 35 35 H 1.09004 * 109.46977 * 60.00233 * 16 15 13 36 36 H 1.08994 * 109.47372 * 300.00076 * 16 15 13 37 37 H 1.08003 * 119.99880 * 359.97438 * 18 17 16 38 38 H 1.08999 * 109.47689 * 270.28418 * 20 19 18 39 39 H 1.09001 * 109.46807 * 30.28638 * 20 19 18 40 40 H 1.09004 * 109.47205 * 150.28211 * 20 19 18 41 41 H 1.07998 * 120.00341 * 179.71685 * 21 19 18 42 42 H 1.08998 * 109.47193 * 270.02205 * 23 22 21 43 43 H 1.09006 * 109.46688 * 30.01895 * 23 22 21 44 44 H 1.08995 * 109.47091 * 150.02056 * 23 22 21 45 45 H 1.07995 * 119.99718 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.5514 1.1833 6 1 5.1327 1.0401 1.3103 7 6 3.6712 2.3196 2.2183 8 7 2.8001 3.2688 1.9594 9 14 4.2121 2.0030 3.9781 10 1 5.4016 2.8365 4.2878 11 1 3.1071 2.3532 4.9063 12 1 4.5578 0.5679 4.1391 13 6 4.1794 1.3355 -1.1614 14 8 5.3923 1.3350 -1.1608 15 6 3.4265 1.2163 -2.4613 16 6 4.4213 1.1089 -3.6188 17 6 3.6683 0.9892 -4.9188 18 6 3.3274 -0.2580 -5.4077 19 6 2.6324 -0.3676 -6.5976 20 6 2.2562 -1.7271 -7.1281 21 6 2.2877 0.7695 -7.3040 22 6 2.6333 2.0166 -6.8177 23 6 2.2580 3.2563 -7.5880 24 6 3.3240 2.1263 -5.6253 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 2.4377 3.8048 2.6820 33 1 2.8002 2.0975 -2.6005 34 1 2.7995 0.3250 -2.4377 35 1 5.0472 0.2275 -3.4794 36 1 5.0486 1.9999 -3.6427 37 1 3.6009 -1.1467 -4.8583 38 1 3.0560 -2.1021 -7.7666 39 1 2.1048 -2.4131 -6.2947 40 1 1.3357 -1.6494 -7.7066 41 1 1.7488 0.6837 -8.2359 42 1 3.0579 3.5073 -8.2846 43 1 1.3372 3.0747 -8.1423 44 1 2.1075 4.0834 -6.8943 45 1 3.5943 3.1005 -5.2456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121946431.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:08 Heat of formation + Delta-G solvation = -54.510879 kcal Electronic energy + Delta-G solvation = -22911.673933 eV Core-core repulsion = 19699.298776 eV Total energy + Delta-G solvation = -3212.375157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.82185 -40.21150 -37.21362 -35.41235 -34.47002 -34.34465 -33.01413 -31.25211 -28.24876 -27.68920 -27.51594 -26.62266 -25.04140 -22.48601 -21.57296 -21.41298 -20.40948 -18.81804 -17.85209 -17.13616 -16.97081 -16.70774 -16.12468 -15.91498 -15.38940 -15.19064 -14.92533 -14.49849 -14.47104 -13.96615 -13.90181 -13.74342 -13.69891 -13.41181 -13.29605 -13.28002 -13.12200 -12.97626 -12.75117 -12.61901 -12.29599 -12.12922 -12.11620 -12.01596 -11.98290 -11.75167 -11.74384 -11.47692 -10.88891 -10.37113 -9.46245 -9.45203 -9.41649 -8.34783 -6.04109 0.46296 0.48531 1.35596 1.40069 1.52914 2.03679 2.29164 2.78901 3.00249 3.11585 3.76279 3.86919 3.97619 4.11497 4.16684 4.19268 4.28525 4.31893 4.36204 4.51349 4.53058 4.58506 4.66505 4.72558 4.76669 4.82067 4.84373 4.88024 4.89147 4.99478 5.08624 5.09509 5.14290 5.17556 5.28988 5.33016 5.40043 5.41081 5.47755 5.60521 5.69402 5.69838 5.79852 6.18597 6.20175 6.53622 7.17932 7.48359 8.07919 8.67311 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.003663 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.175683 B = 7642.194061 C = 7949.248713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.103 3.897 4 N -0.454 5.454 5 C -0.345 4.345 6 H 0.062 0.938 7 C 0.005 3.995 8 N -0.887 5.887 9 Si 0.978 3.022 10 H -0.278 1.278 11 H -0.265 1.265 12 H -0.268 1.268 13 C 0.440 3.560 14 O -0.632 6.632 15 C -0.107 4.107 16 C -0.053 4.053 17 C -0.076 4.076 18 C -0.137 4.137 19 C -0.086 4.086 20 C -0.111 4.111 21 C -0.132 4.132 22 C -0.087 4.087 23 C -0.112 4.112 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.274 0.726 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.807 -5.609 -16.607 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.172 5.172 5 C -0.473 4.473 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.525 5.525 9 Si 0.802 3.198 10 H -0.204 1.204 11 H -0.189 1.189 12 H -0.193 1.193 13 C 0.231 3.769 14 O -0.520 6.520 15 C -0.147 4.147 16 C -0.091 4.091 17 C -0.077 4.077 18 C -0.155 4.155 19 C -0.086 4.086 20 C -0.168 4.168 21 C -0.150 4.150 22 C -0.087 4.087 23 C -0.168 4.168 24 C -0.159 4.159 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.141 0.859 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.099 0.901 41 H 0.161 0.839 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.362 -5.454 -16.476 19.265 hybrid contribution 0.725 0.243 1.310 1.516 sum -7.638 -5.210 -15.167 17.763 Atomic orbital electron populations 1.21625 0.93258 1.02428 1.02116 1.21873 0.97449 0.96597 1.01128 1.21748 0.79983 0.96798 1.03537 1.43826 1.06092 1.62577 1.04681 1.19400 1.06967 1.29880 0.91075 0.91964 1.26037 0.97117 0.92904 1.03713 1.69989 1.31289 1.16976 1.34223 0.85183 0.78206 0.78867 0.77575 1.20404 1.18939 1.19273 1.21296 0.87967 0.81137 0.86540 1.90458 1.16354 1.57264 1.87881 1.21454 0.98482 1.03913 0.90817 1.20153 0.96159 1.02499 0.90279 1.19847 0.98255 0.94100 0.95453 1.21068 1.00586 0.96746 0.97145 1.20210 0.97000 0.97048 0.94314 1.20825 1.02430 0.91879 1.01621 1.21176 1.01950 0.91130 1.00768 1.20199 0.97089 0.96546 0.94826 1.20826 1.02471 0.93857 0.99677 1.21073 1.00803 0.98033 0.96007 0.91072 0.93107 0.91713 0.92344 0.93646 0.89108 0.92158 0.91626 0.89487 0.88578 0.91752 0.92356 0.85909 0.90336 0.91255 0.90084 0.83856 0.90335 0.89988 0.91534 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.04 16 2 C -0.13 -4.75 6.17 30.59 0.19 -4.56 16 3 C 0.10 4.53 4.71 86.38 0.41 4.94 16 4 N -0.45 -24.02 2.56 -635.56 -1.63 -25.64 16 5 C -0.35 -20.15 8.98 84.04 0.75 -19.39 16 6 H 0.06 3.90 7.70 -2.91 -0.02 3.87 16 7 C 0.00 0.25 4.92 84.92 0.42 0.67 16 8 N -0.89 -48.35 11.33 21.66 0.25 -48.10 16 9 Si 0.98 42.92 29.61 68.60 2.03 44.95 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.44 22.65 7.59 87.65 0.67 23.32 16 14 O -0.63 -37.58 15.80 -3.06 -0.05 -37.62 16 15 C -0.11 -4.11 4.29 29.85 0.13 -3.98 16 16 C -0.05 -1.89 4.64 29.85 0.14 -1.75 16 17 C -0.08 -2.27 5.13 -19.87 -0.10 -2.37 16 18 C -0.14 -3.60 9.36 22.27 0.21 -3.40 16 19 C -0.09 -1.86 5.88 -19.87 -0.12 -1.97 16 20 C -0.11 -1.67 10.01 71.24 0.71 -0.96 16 21 C -0.13 -2.70 9.36 22.27 0.21 -2.49 16 22 C -0.09 -1.95 5.88 -19.87 -0.12 -2.06 16 23 C -0.11 -1.82 10.01 71.23 0.71 -1.10 16 24 C -0.14 -3.86 9.36 22.27 0.21 -3.65 16 25 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.06 1.98 6.59 -2.39 -0.02 1.97 16 29 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 30 H 0.09 4.45 5.34 -2.38 -0.01 4.44 16 31 H 0.06 2.44 6.66 -2.38 -0.02 2.43 16 32 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.09 3.20 7.41 -2.39 -0.02 3.18 16 34 H 0.10 3.30 6.54 -2.39 -0.02 3.29 16 35 H 0.06 2.39 8.04 -2.38 -0.02 2.37 16 36 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 37 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 40 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.04 8.09 -2.38 -0.02 1.02 16 44 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 45 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -69.82 366.83 6.68 -63.14 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.95 Total: 25.10 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 5.13 Total: -21.81 kcal Atomic # 7 Polarization: -72.37 SS G_CDS: -1.38 Total: -73.75 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.05 Total: -37.62 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -69.82 6.68 -63.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121946431.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.625 kcal (2) G-P(sol) polarization free energy of solvation -69.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds