Wall clock time and date at job start Tue Mar 31 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 H 1.08997 * 109.47423 * 55.00134 * 3 2 1 5 5 C 1.50695 * 109.47390 * 175.00470 * 3 2 1 6 6 H 1.08004 * 120.00498 * 120.00113 * 5 3 2 7 7 C 1.37882 * 119.99585 * 300.00252 * 5 3 2 8 8 N 1.31508 * 120.00360 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99794 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47648 * 89.99807 * 9 7 5 11 11 H 1.48499 * 109.46991 * 210.00137 * 9 7 5 12 12 H 1.48503 * 109.47071 * 329.99574 * 9 7 5 13 13 N 1.46506 * 109.47390 * 295.00521 * 3 2 1 14 14 C 1.34769 * 120.00046 * 84.99879 * 13 3 2 15 15 O 1.21557 * 120.00339 * 359.97438 * 14 13 3 16 16 C 1.47848 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.39595 * 120.14232 * 349.38524 * 16 14 13 18 18 C 1.37941 * 119.85102 * 179.97438 * 17 16 14 19 19 C 1.38382 * 120.14473 * 0.02562 * 18 17 16 20 20 C 1.38342 * 120.29398 * 359.97438 * 19 18 17 21 21 C 1.37979 * 120.14391 * 359.74252 * 20 19 18 22 22 C 1.50698 * 120.07880 * 180.25157 * 21 20 19 23 23 C 1.53007 * 109.46586 * 6.15036 * 22 21 20 24 24 C 1.52997 * 109.47297 * 126.14584 * 22 21 20 25 25 C 1.52994 * 109.47562 * 246.15581 * 22 21 20 26 26 H 1.08998 * 109.46580 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47093 * 299.99560 * 1 2 3 28 28 H 1.08999 * 109.47450 * 59.99740 * 1 2 3 29 29 H 1.09002 * 109.47093 * 240.00440 * 2 1 3 30 30 H 1.08999 * 109.47450 * 120.00260 * 2 1 3 31 31 H 0.96995 * 120.00183 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99817 * 265.00384 * 13 3 2 33 33 H 1.07998 * 120.07458 * 0.02562 * 17 16 14 34 34 H 1.07993 * 119.93005 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.85362 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.93196 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.47092 * 59.99997 * 23 22 21 38 38 H 1.09002 * 109.46778 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.47580 * 300.00005 * 23 22 21 40 40 H 1.09001 * 109.46859 * 23.78957 * 24 22 21 41 41 H 1.09000 * 109.47167 * 143.78023 * 24 22 21 42 42 H 1.08995 * 109.47843 * 263.78433 * 24 22 21 43 43 H 1.08995 * 109.47858 * 89.60985 * 25 22 21 44 44 H 1.09004 * 109.47101 * 209.61434 * 25 22 21 45 45 H 1.09001 * 109.46760 * 329.60808 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5418 1.4444 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4063 0.3374 2.1732 9 14 6.0050 0.8814 1.3816 10 1 6.4417 2.1142 2.0847 11 1 6.4397 -0.3097 2.1546 12 1 6.6135 0.8418 0.0276 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6645 -1.3668 15 8 -0.3415 2.6319 -0.4321 16 6 0.0436 3.3251 -2.6303 17 6 0.9967 3.5604 -3.6227 18 6 0.6248 4.1767 -4.7994 19 6 -0.6896 4.5619 -4.9970 20 6 -1.6390 4.3316 -4.0175 21 6 -1.2814 3.7107 -2.8382 22 6 -2.3180 3.4555 -1.7746 23 6 -3.7005 3.8365 -2.3080 24 6 -2.3076 1.9727 -1.3978 25 6 -1.9984 4.2982 -0.5383 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8294 -0.0611 2.9497 32 1 2.2717 2.1232 -1.9978 33 1 2.0227 3.2599 -3.4699 34 1 1.3612 4.3598 -5.5679 35 1 -0.9755 5.0444 -5.9199 36 1 -2.6630 4.6349 -4.1776 37 1 -3.9282 3.2361 -3.1888 38 1 -4.4503 3.6514 -1.5388 39 1 -3.7079 4.8928 -2.5765 40 1 -1.3344 1.5439 -1.6368 41 1 -2.4983 1.8678 -0.3297 42 1 -3.0826 1.4499 -1.9582 43 1 -2.4898 5.2675 -0.6222 44 1 -2.3572 3.7850 0.3539 45 1 -0.9204 4.4424 -0.4656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132680729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:23 Heat of formation + Delta-G solvation = -1.412667 kcal Electronic energy + Delta-G solvation = -24473.989664 eV Core-core repulsion = 21263.917018 eV Total energy + Delta-G solvation = -3210.072645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.60750 -38.07102 -36.31713 -34.81257 -32.45577 -31.48878 -30.42579 -29.82195 -27.16660 -27.00380 -26.61905 -23.79727 -22.78228 -22.52222 -20.40608 -19.31678 -18.89130 -17.79264 -16.25755 -15.68238 -15.27573 -15.03139 -14.77726 -14.49225 -14.15362 -14.07191 -13.86467 -13.41407 -12.88532 -12.69964 -12.45563 -12.01216 -11.90767 -11.79212 -11.69516 -11.40513 -11.33398 -11.24278 -11.07278 -10.93233 -10.72088 -10.50377 -10.41459 -10.32263 -10.22551 -9.83961 -9.45265 -9.04021 -8.80327 -8.68589 -8.55862 -8.47952 -7.70031 -6.12375 -4.21540 1.12601 1.48110 3.24190 3.31198 3.32602 3.40244 4.10808 4.19363 4.39035 4.77888 4.87945 5.01212 5.18204 5.19370 5.28429 5.33630 5.50916 5.59943 5.65814 5.86345 5.97956 5.99668 6.06356 6.11108 6.22205 6.32308 6.35628 6.41207 6.43911 6.51556 6.55633 6.62825 6.69728 6.74648 6.89544 6.99034 7.02398 7.13795 7.25636 7.39941 7.48092 7.63255 7.75090 7.91759 8.19266 8.68870 8.78499 9.14983 9.46019 10.92786 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021180 B = 0.005007 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.664814 B = 5591.253293 C = 6421.474651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.531 3.469 15 O -0.520 6.520 16 C -0.125 4.125 17 C -0.087 4.087 18 C -0.137 4.137 19 C -0.103 4.103 20 C -0.137 4.137 21 C -0.015 4.015 22 C -0.020 4.020 23 C -0.143 4.143 24 C -0.124 4.124 25 C -0.115 4.115 26 H 0.020 0.980 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.385 0.615 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.128 0.872 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.058 0.942 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 6.264 -12.060 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.351 5.351 14 C 0.317 3.683 15 O -0.400 6.400 16 C -0.128 4.128 17 C -0.106 4.106 18 C -0.155 4.155 19 C -0.122 4.122 20 C -0.155 4.155 21 C -0.016 4.016 22 C -0.020 4.020 23 C -0.200 4.200 24 C -0.181 4.181 25 C -0.172 4.172 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.219 0.781 33 H 0.145 0.855 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.044 0.956 43 H 0.046 0.954 44 H 0.077 0.923 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.610 6.107 -11.156 15.941 hybrid contribution 1.447 -0.023 -0.381 1.497 sum -8.163 6.084 -11.537 15.387 Atomic orbital electron populations 1.22047 0.98327 0.98137 1.01675 1.21924 0.92751 0.99771 1.02154 1.18774 0.94111 0.89144 0.80897 0.93158 1.21231 0.90811 1.38972 1.06247 0.92221 1.24865 0.98492 0.94802 0.95406 1.69888 1.35078 1.37621 1.09313 0.86482 0.85010 0.77632 0.78176 1.20594 1.21094 1.19886 1.46494 1.14468 1.55629 1.18480 1.18050 0.82889 0.80022 0.87313 1.90849 1.49924 1.58781 1.40443 1.20178 0.93998 1.02725 0.95878 1.21384 0.99184 0.97093 0.92935 1.21032 0.96396 1.00502 0.97610 1.21244 0.93323 0.98868 0.98733 1.21139 0.99940 1.00753 0.93619 1.20111 0.93135 0.93906 0.94481 1.19436 0.91485 0.97690 0.93435 1.22076 0.96568 1.00651 1.00700 1.22313 1.01526 0.92889 1.01327 1.21968 1.03057 0.96399 0.95744 0.96100 0.93094 0.93181 0.95204 0.88395 0.92598 0.78147 0.85534 0.85962 0.86201 0.85444 0.92862 0.92434 0.92825 0.90622 0.91768 0.95593 0.95428 0.92300 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.70 -14.26 4.97 -55.88 -0.28 -14.54 16 14 C 0.53 10.17 4.88 -12.33 -0.06 10.11 16 15 O -0.52 -10.71 6.48 5.32 0.03 -10.67 16 16 C -0.12 -2.02 5.31 -104.96 -0.56 -2.57 16 17 C -0.09 -1.21 9.50 -39.18 -0.37 -1.58 16 18 C -0.14 -1.60 10.03 -39.64 -0.40 -2.00 16 19 C -0.10 -1.15 10.04 -39.49 -0.40 -1.55 16 20 C -0.14 -1.69 8.99 -39.64 -0.36 -2.04 16 21 C -0.02 -0.23 4.73 -104.22 -0.49 -0.72 16 22 C -0.02 -0.30 0.75 -155.66 -0.12 -0.42 16 23 C -0.14 -1.67 6.77 37.16 0.25 -1.42 16 24 C -0.12 -2.01 7.33 37.16 0.27 -1.74 16 25 C -0.11 -1.83 7.56 37.15 0.28 -1.55 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 1.16 7.84 -51.93 -0.41 0.75 16 28 H 0.05 1.03 3.42 -51.93 -0.18 0.85 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 7.00 6.69 -40.82 -0.27 6.73 16 33 H 0.13 1.62 6.54 -52.49 -0.34 1.27 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.31 5.91 -52.49 -0.31 1.00 16 37 H 0.05 0.58 7.78 -51.93 -0.40 0.17 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.56 7.20 -51.93 -0.37 0.19 16 40 H 0.08 1.37 2.75 -51.93 -0.14 1.23 16 41 H 0.06 1.11 6.94 -51.93 -0.36 0.75 16 42 H 0.03 0.37 7.74 -51.93 -0.40 -0.03 16 43 H 0.03 0.38 7.82 -51.93 -0.41 -0.02 16 44 H 0.06 0.97 7.28 -51.93 -0.38 0.59 16 45 H 0.07 1.35 5.44 -51.93 -0.28 1.07 16 LS Contribution 333.18 15.07 5.02 5.02 Total: -1.00 -27.84 333.18 -8.56 -36.40 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -6.62 Total: 9.56 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: -2.32 Total: -17.43 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.35 Total: -38.31 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.03 Total: -10.67 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.84 -8.56 -36.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132680729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.986 kcal (2) G-P(sol) polarization free energy of solvation -27.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds