Wall clock time and date at job start Tue Mar 31 2020 05:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47016 * 2 1 4 4 H 1.08997 * 109.47423 * 55.00134 * 3 2 1 5 5 C 1.50695 * 109.47390 * 175.00470 * 3 2 1 6 6 H 1.08004 * 120.00498 * 120.00113 * 5 3 2 7 7 C 1.37882 * 119.99585 * 300.00252 * 5 3 2 8 8 N 1.31508 * 120.00360 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99794 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47648 * 89.99807 * 9 7 5 11 11 H 1.48499 * 109.46991 * 210.00137 * 9 7 5 12 12 H 1.48503 * 109.47071 * 329.99574 * 9 7 5 13 13 N 1.46506 * 109.47390 * 295.00521 * 3 2 1 14 14 C 1.34769 * 120.00046 * 84.99879 * 13 3 2 15 15 O 1.21557 * 120.00339 * 359.97438 * 14 13 3 16 16 C 1.47848 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.39595 * 120.14232 * 349.38524 * 16 14 13 18 18 C 1.37941 * 119.85102 * 179.97438 * 17 16 14 19 19 C 1.38382 * 120.14473 * 0.02562 * 18 17 16 20 20 C 1.38342 * 120.29398 * 359.97438 * 19 18 17 21 21 C 1.37979 * 120.14391 * 359.74252 * 20 19 18 22 22 C 1.50698 * 120.07880 * 180.25157 * 21 20 19 23 23 C 1.53007 * 109.46586 * 6.15036 * 22 21 20 24 24 C 1.52997 * 109.47297 * 126.14584 * 22 21 20 25 25 C 1.52994 * 109.47562 * 246.15581 * 22 21 20 26 26 H 1.08998 * 109.46580 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47093 * 299.99560 * 1 2 3 28 28 H 1.08999 * 109.47450 * 59.99740 * 1 2 3 29 29 H 1.09002 * 109.47093 * 240.00440 * 2 1 3 30 30 H 1.08999 * 109.47450 * 120.00260 * 2 1 3 31 31 H 0.96995 * 120.00183 * 179.97438 * 8 7 5 32 32 H 0.97000 * 119.99817 * 265.00384 * 13 3 2 33 33 H 1.07998 * 120.07458 * 0.02562 * 17 16 14 34 34 H 1.07993 * 119.93005 * 179.97438 * 18 17 16 35 35 H 1.07997 * 119.85362 * 179.97438 * 19 18 17 36 36 H 1.07998 * 119.93196 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.47092 * 59.99997 * 23 22 21 38 38 H 1.09002 * 109.46778 * 179.97438 * 23 22 21 39 39 H 1.08995 * 109.47580 * 300.00005 * 23 22 21 40 40 H 1.09001 * 109.46859 * 23.78957 * 24 22 21 41 41 H 1.09000 * 109.47167 * 143.78023 * 24 22 21 42 42 H 1.08995 * 109.47843 * 263.78433 * 24 22 21 43 43 H 1.08995 * 109.47858 * 89.60985 * 25 22 21 44 44 H 1.09004 * 109.47101 * 209.61434 * 25 22 21 45 45 H 1.09001 * 109.46760 * 329.60808 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5418 1.4444 0.1237 6 1 4.1471 1.8890 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4063 0.3374 2.1732 9 14 6.0050 0.8814 1.3816 10 1 6.4417 2.1142 2.0847 11 1 6.4397 -0.3097 2.1546 12 1 6.6135 0.8418 0.0276 13 7 1.6523 2.0976 -1.2518 14 6 0.4350 2.6645 -1.3668 15 8 -0.3415 2.6319 -0.4321 16 6 0.0436 3.3251 -2.6303 17 6 0.9967 3.5604 -3.6227 18 6 0.6248 4.1767 -4.7994 19 6 -0.6896 4.5619 -4.9970 20 6 -1.6390 4.3316 -4.0175 21 6 -1.2814 3.7107 -2.8382 22 6 -2.3180 3.4555 -1.7746 23 6 -3.7005 3.8365 -2.3080 24 6 -2.3076 1.9727 -1.3978 25 6 -1.9984 4.2982 -0.5383 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8294 -0.0611 2.9497 32 1 2.2717 2.1232 -1.9978 33 1 2.0227 3.2599 -3.4699 34 1 1.3612 4.3598 -5.5679 35 1 -0.9755 5.0444 -5.9199 36 1 -2.6630 4.6349 -4.1776 37 1 -3.9282 3.2361 -3.1888 38 1 -4.4503 3.6514 -1.5388 39 1 -3.7079 4.8928 -2.5765 40 1 -1.3344 1.5439 -1.6368 41 1 -2.4983 1.8678 -0.3297 42 1 -3.0826 1.4499 -1.9582 43 1 -2.4898 5.2675 -0.6222 44 1 -2.3572 3.7850 0.3539 45 1 -0.9204 4.4424 -0.4656 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132680729.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:23 Heat of formation + Delta-G solvation = -16.034268 kcal Electronic energy + Delta-G solvation = -24474.623704 eV Core-core repulsion = 21263.917018 eV Total energy + Delta-G solvation = -3210.706686 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87461 -39.42547 -37.55186 -36.48608 -34.24435 -33.10860 -31.76239 -30.88925 -28.94085 -28.09237 -28.01590 -25.38786 -24.26784 -23.65596 -21.99842 -20.97895 -20.08327 -19.20663 -17.94288 -17.26736 -16.67991 -16.56030 -16.17529 -15.74896 -15.52332 -15.20673 -14.97388 -14.72669 -14.58285 -14.23747 -13.88896 -13.50217 -13.22446 -13.12805 -13.07387 -12.91640 -12.78867 -12.73125 -12.58563 -12.40520 -12.28271 -12.08417 -11.83334 -11.64108 -11.58023 -11.49483 -11.08405 -11.01790 -10.53375 -10.17045 -9.81949 -9.62329 -9.38344 -8.15681 -6.32598 0.05079 0.49965 1.43625 1.43822 1.54309 2.15614 2.36660 2.71454 3.01015 3.14003 3.71132 3.85174 4.01839 4.15723 4.26812 4.29284 4.43609 4.52077 4.58515 4.59704 4.61563 4.77409 4.85554 4.89412 4.95128 4.95741 5.01371 5.10852 5.15763 5.23041 5.26360 5.32014 5.32791 5.44838 5.53254 5.53935 5.56903 5.62343 5.65027 5.70239 5.82958 5.84520 5.98407 6.07969 6.20108 6.75743 7.07139 7.34801 7.65267 8.89334 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021180 B = 0.005007 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.664814 B = 5591.253293 C = 6421.474651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.284 3.716 4 H 0.001 0.999 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.261 1.261 13 N -0.706 5.706 14 C 0.527 3.473 15 O -0.541 6.541 16 C -0.152 4.152 17 C -0.097 4.097 18 C -0.133 4.133 19 C -0.090 4.090 20 C -0.136 4.136 21 C -0.029 4.029 22 C -0.022 4.022 23 C -0.137 4.137 24 C -0.119 4.119 25 C -0.108 4.108 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.396 0.604 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 7.587 -15.504 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.159 4.159 3 C 0.181 3.819 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.186 1.186 13 N -0.356 5.356 14 C 0.316 3.684 15 O -0.422 6.422 16 C -0.155 4.155 17 C -0.116 4.116 18 C -0.151 4.151 19 C -0.108 4.108 20 C -0.153 4.153 21 C -0.030 4.030 22 C -0.022 4.022 23 C -0.194 4.194 24 C -0.176 4.176 25 C -0.165 4.165 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.231 0.769 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.171 0.829 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -9.998 7.446 -14.633 19.223 hybrid contribution 1.510 -0.373 0.651 1.686 sum -8.488 7.073 -13.982 17.820 Atomic orbital electron populations 1.21889 0.96730 0.98974 1.01135 1.21763 0.94092 0.99198 1.00814 1.18292 0.93356 0.88997 0.81265 0.98141 1.21584 0.91682 1.38813 1.06577 0.91434 1.25726 1.03106 0.94399 0.95050 1.70043 1.36953 1.38394 1.09819 0.85420 0.79410 0.77410 0.78549 1.20471 1.20951 1.18555 1.46247 1.15579 1.56341 1.17423 1.18624 0.81953 0.79369 0.88492 1.90843 1.50360 1.59284 1.41692 1.19974 0.95570 1.04921 0.95012 1.21535 0.98960 0.97600 0.93455 1.21411 0.97643 0.98991 0.97054 1.21729 0.92541 0.97030 0.99521 1.21450 1.01618 0.99682 0.92563 1.20197 0.92346 0.94904 0.95600 1.19424 0.93733 0.95970 0.93062 1.22026 0.94194 1.01966 1.01185 1.22198 1.00637 0.94671 1.00053 1.21848 1.00954 0.97563 0.96121 0.94393 0.95327 0.92084 0.94717 0.91260 0.92675 0.76933 0.85301 0.82910 0.82311 0.82874 0.91450 0.92198 0.91053 0.92855 0.94050 0.93943 0.93423 0.94150 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.51 71.98 0.61 -5.26 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.65 2.24 44.24 0.10 14.75 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 5 C -0.55 -29.31 8.73 25.60 0.22 -29.08 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.94 5.29 84.66 0.45 1.39 16 8 N -0.91 -52.62 11.29 21.45 0.24 -52.38 16 9 Si 0.97 42.46 29.54 68.60 2.03 44.49 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 13 N -0.71 -29.89 4.97 -448.98 -2.23 -32.12 16 14 C 0.53 21.07 4.88 86.79 0.42 21.50 16 15 O -0.54 -23.78 6.48 -3.90 -0.03 -23.81 16 16 C -0.15 -4.87 5.31 -20.09 -0.11 -4.98 16 17 C -0.10 -2.54 9.50 22.53 0.21 -2.32 16 18 C -0.13 -2.60 10.03 22.23 0.22 -2.37 16 19 C -0.09 -1.56 10.04 22.33 0.22 -1.34 16 20 C -0.14 -2.81 8.99 22.23 0.20 -2.61 16 21 C -0.03 -0.83 4.73 -19.61 -0.09 -0.92 16 22 C -0.02 -0.63 0.75 -52.93 -0.04 -0.67 16 23 C -0.14 -2.81 6.77 71.98 0.49 -2.33 16 24 C -0.12 -3.93 7.33 71.98 0.53 -3.40 16 25 C -0.11 -3.52 7.56 71.98 0.54 -2.98 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.03 1.37 7.84 -2.39 -0.02 1.36 16 28 H 0.06 2.62 3.42 -2.39 -0.01 2.61 16 29 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 3.87 5.95 -2.39 -0.01 3.86 16 31 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.40 14.75 6.69 -92.71 -0.62 14.13 16 33 H 0.13 3.18 6.54 -2.91 -0.02 3.16 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.15 2.36 5.91 -2.91 -0.02 2.34 16 37 H 0.07 1.21 7.78 -2.39 -0.02 1.19 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.22 7.20 -2.39 -0.02 1.21 16 40 H 0.05 1.99 2.75 -2.39 -0.01 1.98 16 41 H 0.04 1.51 6.94 -2.39 -0.02 1.49 16 42 H 0.04 1.21 7.74 -2.39 -0.02 1.19 16 43 H 0.05 1.31 7.82 -2.39 -0.02 1.29 16 44 H 0.04 1.41 7.28 -2.38 -0.02 1.40 16 45 H 0.04 1.62 5.44 -2.39 -0.01 1.61 16 Total: -1.00 -64.20 333.18 4.55 -59.65 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.38 Total: 30.61 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 4.15 Total: -26.44 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.99 Total: -84.50 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.03 Total: -23.81 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -64.20 4.55 -59.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132680729.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.616 kcal (2) G-P(sol) polarization free energy of solvation -64.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds