Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 H 1.09007 * 109.46942 * 185.15333 * 3 2 1 5 5 C 1.50697 * 109.47376 * 305.15040 * 3 2 1 6 6 H 1.08005 * 120.00014 * 119.99988 * 5 3 2 7 7 C 1.37875 * 120.00297 * 299.99862 * 5 3 2 8 8 N 1.31518 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00163 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47200 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46973 * 120.00775 * 9 7 5 12 12 H 1.48506 * 109.47119 * 240.00589 * 9 7 5 13 13 N 1.46902 * 109.47234 * 65.15276 * 3 2 1 14 14 C 1.46904 * 110.99833 * 86.16093 * 13 3 2 15 15 H 1.09006 * 109.67847 * 326.65144 * 14 13 3 16 16 C 1.53329 * 109.67998 * 206.13691 * 14 13 3 17 17 C 1.52724 * 108.38045 * 170.37189 * 16 14 13 18 18 C 1.50655 * 110.59577 * 51.11676 * 17 16 14 19 19 C 1.38955 * 117.69115 * 162.49856 * 18 17 16 20 20 C 1.37833 * 120.63003 * 179.70905 * 19 18 17 21 21 C 1.38768 * 119.70864 * 359.91427 * 20 19 18 22 22 O 1.35892 * 120.17154 * 179.82533 * 21 20 19 23 23 C 1.42897 * 117.00388 * 359.97438 * 22 21 20 24 24 C 1.38429 * 119.65105 * 0.09719 * 21 20 19 25 25 C 1.37708 * 122.53836 * 342.27712 * 18 17 16 26 26 C 1.50645 * 122.56525 * 0.62237 * 25 18 17 27 27 H 1.08997 * 109.47010 * 174.54720 * 1 2 3 28 28 H 1.09003 * 109.46987 * 294.54546 * 1 2 3 29 29 H 1.09001 * 109.47225 * 54.54756 * 1 2 3 30 30 H 1.08999 * 109.46787 * 240.00284 * 2 1 3 31 31 H 1.08993 * 109.47328 * 119.99955 * 2 1 3 32 32 H 0.96993 * 120.00106 * 179.97438 * 8 7 5 33 33 H 1.00896 * 110.99621 * 322.20578 * 13 3 2 34 34 H 1.09001 * 109.68295 * 50.64594 * 16 14 13 35 35 H 1.08996 * 109.68173 * 290.09196 * 16 14 13 36 36 H 1.08998 * 109.25152 * 290.82895 * 17 16 14 37 37 H 1.08997 * 109.22096 * 171.38371 * 17 16 14 38 38 H 1.08000 * 119.68508 * 359.74051 * 19 18 17 39 39 H 1.07992 * 120.14651 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46926 * 300.00308 * 23 22 21 41 41 H 1.09000 * 109.47196 * 60.00388 * 23 22 21 42 42 H 1.08998 * 109.47268 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.74650 * 180.02562 * 24 21 20 44 44 H 1.09002 * 109.24877 * 222.00595 * 26 25 18 45 45 H 1.08993 * 109.21993 * 102.55981 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1261 1.4439 -0.0923 5 6 1.4362 2.1888 -1.1617 6 1 0.8270 3.0628 -0.9841 7 6 1.6615 1.7560 -2.4512 8 7 2.4029 0.6915 -2.6674 9 14 0.9125 2.6807 -3.8911 10 1 0.1262 3.8337 -3.3838 11 1 1.9952 3.1731 -4.7802 12 1 0.0210 1.7704 -4.6541 13 7 1.6545 2.0982 1.2568 14 6 2.6461 1.8419 2.3099 15 1 3.0734 0.8479 2.1777 16 6 1.9749 1.9367 3.6853 17 6 2.9605 1.4335 4.7378 18 6 4.2918 2.1230 4.5897 19 6 5.1699 2.0695 5.6654 20 6 6.4063 2.6742 5.5933 21 6 6.7791 3.3415 4.4351 22 8 7.9944 3.9441 4.3551 23 6 8.8409 3.8524 5.5027 24 6 5.9041 3.3949 3.3638 25 6 4.6581 2.7874 3.4405 26 6 3.7529 2.8920 2.2409 27 1 -0.3633 -1.0230 -0.0977 28 1 -0.3633 0.4269 0.9348 29 1 -0.3634 0.5961 -0.8371 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.5611 0.3868 -3.5746 33 1 0.7335 1.8072 1.5487 34 1 1.0765 1.3196 3.6987 35 1 1.7118 2.9735 3.8946 36 1 3.0969 0.3588 4.6177 37 1 2.5594 1.6361 5.7309 38 1 4.8809 1.5486 6.5663 39 1 7.0824 2.6282 6.4341 40 1 8.3434 4.3088 6.3585 41 1 9.0475 2.8042 5.7190 42 1 9.7773 4.3745 5.3062 43 1 6.1927 3.9135 2.4615 44 1 4.3384 2.7380 1.3344 45 1 3.3049 3.8852 2.2149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133255399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -30.212680 kcal Electronic energy + Delta-G solvation = -23201.982262 eV Core-core repulsion = 19990.660755 eV Total energy + Delta-G solvation = -3211.321508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35574 -38.65958 -36.69838 -34.53678 -32.46179 -31.84709 -30.39560 -29.18466 -27.94735 -26.79242 -25.84158 -23.55532 -22.82871 -22.10978 -21.65698 -19.38651 -18.97599 -17.60070 -16.25991 -16.06961 -15.82367 -15.59825 -15.05456 -14.72251 -14.32540 -13.77745 -13.65146 -13.44366 -13.10063 -13.06610 -12.78467 -12.61049 -12.39654 -12.17382 -11.96782 -11.81558 -11.63160 -11.24030 -10.98308 -10.83818 -10.64089 -10.59946 -10.48819 -10.37554 -10.17199 -9.89279 -9.63901 -9.48542 -8.90062 -8.60482 -8.30581 -7.94967 -7.17786 -5.93761 -3.94948 1.42523 1.51274 3.22748 3.33878 3.42277 3.47119 3.80863 4.47092 4.72409 4.82759 4.90515 4.97415 5.00291 5.13334 5.20056 5.27564 5.34065 5.37987 5.38982 5.59143 5.70585 5.83232 5.90243 6.04166 6.06687 6.08054 6.20876 6.31610 6.36633 6.37706 6.40243 6.50240 6.57555 6.61909 6.72995 6.83117 6.93424 6.98902 7.32394 7.35740 7.42178 7.55145 7.74998 7.94450 8.34144 8.60996 8.67926 9.11489 9.68771 11.13285 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.003780 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.167833 B = 7406.280899 C = 8321.732644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.486 4.486 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.681 5.681 14 C 0.091 3.909 15 H 0.040 0.960 16 C -0.120 4.120 17 C -0.072 4.072 18 C -0.113 4.113 19 C -0.083 4.083 20 C -0.216 4.216 21 C 0.120 3.880 22 O -0.319 6.319 23 C 0.030 3.970 24 C -0.153 4.153 25 C -0.020 4.020 26 C -0.071 4.071 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.010 0.990 32 H 0.258 0.742 33 H 0.328 0.672 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.079 0.921 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.783 2.139 17.526 18.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.525 4.525 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.312 5.312 14 C -0.020 4.020 15 H 0.058 0.942 16 C -0.158 4.158 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.101 4.101 20 C -0.234 4.234 21 C 0.075 3.925 22 O -0.233 6.233 23 C -0.066 4.066 24 C -0.172 4.172 25 C -0.021 4.021 26 C -0.109 4.109 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.028 0.972 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.148 0.852 44 H 0.097 0.903 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.203 2.758 17.031 18.696 hybrid contribution -0.303 -0.689 -0.331 0.822 sum 6.900 2.069 16.700 18.187 Atomic orbital electron populations 1.21596 0.97741 0.98648 1.00719 1.22102 0.94953 1.01265 1.00174 1.19242 0.95901 0.88462 0.85633 0.94943 1.21119 1.30297 1.11409 0.89674 0.91987 1.24916 0.95602 0.95176 0.98728 1.69894 1.39168 1.24032 1.20511 0.86548 0.78961 0.79893 0.82653 1.19764 1.21244 1.21313 1.60798 1.03491 1.63352 1.03590 1.21339 0.93560 0.96342 0.90728 0.94243 1.21763 0.97549 1.01816 0.94700 1.20379 0.91823 0.99391 0.99343 1.19576 0.96907 1.01197 0.93687 1.20890 0.92995 0.98161 0.98091 1.21046 0.99105 1.05250 0.98019 1.18892 0.85191 0.93920 0.94497 1.86065 1.25385 1.72086 1.39780 1.22995 0.93858 1.01812 0.87910 1.20470 0.93393 1.04950 0.98397 1.19669 0.93427 0.93959 0.95032 1.20539 0.95293 1.00957 0.94083 0.95863 0.95420 0.91227 0.88992 0.97161 0.93244 0.85282 0.91791 0.91213 0.91094 0.91280 0.86226 0.85947 0.92892 0.92857 0.88506 0.85240 0.90287 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.40 37.16 0.35 -2.39 16 2 C -0.15 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.22 2.14 -68.87 -0.15 5.07 16 4 H 0.03 0.88 7.37 -51.92 -0.38 0.50 16 5 C -0.49 -12.99 7.25 -34.44 -0.25 -13.24 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.53 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -25.26 11.38 55.43 0.63 -24.63 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 N -0.68 -13.93 6.06 -100.92 -0.61 -14.54 16 14 C 0.09 1.60 2.28 -67.68 -0.15 1.44 16 15 H 0.04 0.76 7.16 -51.93 -0.37 0.39 16 16 C -0.12 -1.71 5.35 -26.70 -0.14 -1.85 16 17 C -0.07 -0.90 5.67 -28.05 -0.16 -1.06 16 18 C -0.11 -1.58 5.74 -104.57 -0.60 -2.18 16 19 C -0.08 -1.02 9.60 -39.46 -0.38 -1.39 16 20 C -0.22 -2.60 9.04 -39.53 -0.36 -2.96 16 21 C 0.12 1.66 6.68 -39.32 -0.26 1.40 16 22 O -0.32 -4.11 10.50 -19.40 -0.20 -4.31 16 23 C 0.03 0.24 9.82 101.05 0.99 1.23 16 24 C -0.15 -2.32 9.55 -39.29 -0.38 -2.70 16 25 C -0.02 -0.31 5.74 -104.62 -0.60 -0.91 16 26 C -0.07 -1.22 5.16 -28.05 -0.14 -1.36 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.51 6.64 -51.93 -0.35 0.17 16 29 H 0.07 1.61 6.85 -51.93 -0.36 1.26 16 30 H 0.09 2.42 6.22 -51.93 -0.32 2.09 16 31 H 0.01 0.21 7.50 -51.93 -0.39 -0.18 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 33 H 0.33 6.41 6.13 -39.29 -0.24 6.17 16 34 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 35 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.73 8.12 -51.93 -0.42 0.30 16 38 H 0.12 1.16 8.05 -52.49 -0.42 0.73 16 39 H 0.12 1.15 6.33 -52.49 -0.33 0.82 16 40 H 0.05 0.37 7.67 -51.93 -0.40 -0.02 16 41 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.13 1.91 8.05 -52.49 -0.42 1.49 16 44 H 0.08 1.49 7.71 -51.93 -0.40 1.09 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -28.77 349.19 -9.69 -38.46 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.27 Total: 6.46 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -2.47 Total: -22.99 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.02 Total: -39.17 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.77 -9.69 -38.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.244 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds