Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46873 * 2 1 4 4 H 1.09007 * 109.46942 * 185.15333 * 3 2 1 5 5 C 1.50697 * 109.47376 * 305.15040 * 3 2 1 6 6 H 1.08005 * 120.00014 * 119.99988 * 5 3 2 7 7 C 1.37875 * 120.00297 * 299.99862 * 5 3 2 8 8 N 1.31518 * 120.00042 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00163 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47200 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.46973 * 120.00775 * 9 7 5 12 12 H 1.48506 * 109.47119 * 240.00589 * 9 7 5 13 13 N 1.46902 * 109.47234 * 65.15276 * 3 2 1 14 14 C 1.46904 * 110.99833 * 86.16093 * 13 3 2 15 15 H 1.09006 * 109.67847 * 326.65144 * 14 13 3 16 16 C 1.53329 * 109.67998 * 206.13691 * 14 13 3 17 17 C 1.52724 * 108.38045 * 170.37189 * 16 14 13 18 18 C 1.50655 * 110.59577 * 51.11676 * 17 16 14 19 19 C 1.38955 * 117.69115 * 162.49856 * 18 17 16 20 20 C 1.37833 * 120.63003 * 179.70905 * 19 18 17 21 21 C 1.38768 * 119.70864 * 359.91427 * 20 19 18 22 22 O 1.35892 * 120.17154 * 179.82533 * 21 20 19 23 23 C 1.42897 * 117.00388 * 359.97438 * 22 21 20 24 24 C 1.38429 * 119.65105 * 0.09719 * 21 20 19 25 25 C 1.37708 * 122.53836 * 342.27712 * 18 17 16 26 26 C 1.50645 * 122.56525 * 0.62237 * 25 18 17 27 27 H 1.08997 * 109.47010 * 174.54720 * 1 2 3 28 28 H 1.09003 * 109.46987 * 294.54546 * 1 2 3 29 29 H 1.09001 * 109.47225 * 54.54756 * 1 2 3 30 30 H 1.08999 * 109.46787 * 240.00284 * 2 1 3 31 31 H 1.08993 * 109.47328 * 119.99955 * 2 1 3 32 32 H 0.96993 * 120.00106 * 179.97438 * 8 7 5 33 33 H 1.00896 * 110.99621 * 322.20578 * 13 3 2 34 34 H 1.09001 * 109.68295 * 50.64594 * 16 14 13 35 35 H 1.08996 * 109.68173 * 290.09196 * 16 14 13 36 36 H 1.08998 * 109.25152 * 290.82895 * 17 16 14 37 37 H 1.08997 * 109.22096 * 171.38371 * 17 16 14 38 38 H 1.08000 * 119.68508 * 359.74051 * 19 18 17 39 39 H 1.07992 * 120.14651 * 179.97438 * 20 19 18 40 40 H 1.09004 * 109.46926 * 300.00308 * 23 22 21 41 41 H 1.09000 * 109.47196 * 60.00388 * 23 22 21 42 42 H 1.08998 * 109.47268 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.74650 * 180.02562 * 24 21 20 44 44 H 1.09002 * 109.24877 * 222.00595 * 26 25 18 45 45 H 1.08993 * 109.21993 * 102.55981 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1261 1.4439 -0.0923 5 6 1.4362 2.1888 -1.1617 6 1 0.8270 3.0628 -0.9841 7 6 1.6615 1.7560 -2.4512 8 7 2.4029 0.6915 -2.6674 9 14 0.9125 2.6807 -3.8911 10 1 0.1262 3.8337 -3.3838 11 1 1.9952 3.1731 -4.7802 12 1 0.0210 1.7704 -4.6541 13 7 1.6545 2.0982 1.2568 14 6 2.6461 1.8419 2.3099 15 1 3.0734 0.8479 2.1777 16 6 1.9749 1.9367 3.6853 17 6 2.9605 1.4335 4.7378 18 6 4.2918 2.1230 4.5897 19 6 5.1699 2.0695 5.6654 20 6 6.4063 2.6742 5.5933 21 6 6.7791 3.3415 4.4351 22 8 7.9944 3.9441 4.3551 23 6 8.8409 3.8524 5.5027 24 6 5.9041 3.3949 3.3638 25 6 4.6581 2.7874 3.4405 26 6 3.7529 2.8920 2.2409 27 1 -0.3633 -1.0230 -0.0977 28 1 -0.3633 0.4269 0.9348 29 1 -0.3634 0.5961 -0.8371 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.5611 0.3868 -3.5746 33 1 0.7335 1.8072 1.5487 34 1 1.0765 1.3196 3.6987 35 1 1.7118 2.9735 3.8946 36 1 3.0969 0.3588 4.6177 37 1 2.5594 1.6361 5.7309 38 1 4.8809 1.5486 6.5663 39 1 7.0824 2.6282 6.4341 40 1 8.3434 4.3088 6.3585 41 1 9.0475 2.8042 5.7190 42 1 9.7773 4.3745 5.3062 43 1 6.1927 3.9135 2.4615 44 1 4.3384 2.7380 1.3344 45 1 3.3049 3.8852 2.2149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133255399.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -46.252379 kcal Electronic energy + Delta-G solvation = -23202.677796 eV Core-core repulsion = 19990.660755 eV Total energy + Delta-G solvation = -3212.017041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.39361 -39.78773 -38.19991 -35.99457 -33.88639 -33.39859 -31.95329 -30.19316 -29.34830 -27.83854 -27.53892 -25.31028 -24.12571 -23.18249 -22.90646 -21.08339 -20.31188 -18.60878 -18.09794 -17.22526 -16.90842 -16.66864 -16.56441 -16.44254 -15.45022 -15.35206 -14.86667 -14.64103 -14.51855 -14.29948 -14.16879 -14.12329 -13.87173 -13.50491 -13.18923 -12.90994 -12.84385 -12.75786 -12.67955 -12.44299 -12.30164 -12.07767 -11.74670 -11.64154 -11.56947 -11.49601 -11.40396 -11.13670 -10.88550 -10.41738 -9.70870 -8.95918 -8.89915 -8.03740 -6.11810 0.37481 0.47652 1.41572 1.44497 1.55640 2.38291 2.46742 2.76326 3.25076 3.51161 3.77877 3.91351 3.95583 4.10465 4.21004 4.26704 4.35796 4.38109 4.40879 4.55453 4.57812 4.63226 4.66047 4.71912 4.73213 4.75422 4.88256 4.91481 5.04246 5.05569 5.09466 5.13880 5.21036 5.36298 5.39757 5.43621 5.47089 5.51752 5.72765 5.76410 5.77237 5.88505 5.92400 6.36133 6.49476 6.73408 6.93049 7.04029 7.56215 9.01858 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.003780 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.167833 B = 7406.280899 C = 8321.732644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.224 3.776 4 H -0.009 1.009 5 C -0.496 4.496 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.683 5.683 14 C 0.092 3.908 15 H 0.021 0.979 16 C -0.112 4.112 17 C -0.067 4.067 18 C -0.123 4.123 19 C -0.077 4.077 20 C -0.208 4.208 21 C 0.112 3.888 22 O -0.342 6.342 23 C 0.019 3.981 24 C -0.179 4.179 25 C -0.040 4.040 26 C -0.063 4.063 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.257 0.743 33 H 0.336 0.664 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.043 0.957 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.302 1.890 20.574 21.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.116 3.884 4 H 0.009 0.991 5 C -0.535 4.535 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.315 5.315 14 C -0.018 4.018 15 H 0.039 0.961 16 C -0.150 4.150 17 C -0.104 4.104 18 C -0.123 4.123 19 C -0.095 4.095 20 C -0.226 4.226 21 C 0.068 3.932 22 O -0.256 6.256 23 C -0.075 4.075 24 C -0.198 4.198 25 C -0.041 4.041 26 C -0.100 4.100 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.120 0.880 38 H 0.174 0.826 39 H 0.173 0.827 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.062 0.938 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.721 2.516 20.097 21.340 hybrid contribution -0.023 -0.579 -1.216 1.347 sum 6.698 1.938 18.881 20.127 Atomic orbital electron populations 1.21476 0.95668 0.99603 1.01025 1.21943 0.96705 1.00030 0.99131 1.18932 0.93208 0.89368 0.86932 0.99072 1.21342 1.30056 1.11235 0.90856 0.92872 1.25606 0.96029 0.95916 1.01083 1.70031 1.40196 1.25222 1.20857 0.85623 0.78164 0.78879 0.79669 1.19247 1.21299 1.20697 1.60658 1.04558 1.62969 1.03290 1.21364 0.93133 0.95219 0.92075 0.96108 1.21704 0.98247 1.02451 0.92595 1.20411 0.90524 0.99356 1.00145 1.19817 0.98152 1.00899 0.93462 1.21273 0.92356 0.97347 0.98506 1.21429 0.99586 1.03616 0.98004 1.18993 0.85454 0.94148 0.94654 1.86040 1.25345 1.72016 1.42240 1.23340 0.93981 1.03155 0.87044 1.20481 0.94295 1.06104 0.98953 1.19510 0.93392 0.96015 0.95150 1.20345 0.95271 1.00378 0.94040 0.94011 0.92878 0.93602 0.92311 0.95841 0.93341 0.84426 0.90408 0.91023 0.90517 0.88022 0.82620 0.82681 0.91385 0.91648 0.86594 0.86805 0.93803 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.40 71.98 0.68 -4.31 16 2 C -0.14 -6.55 5.49 30.59 0.17 -6.39 16 3 C 0.22 11.32 2.14 44.17 0.09 11.42 16 4 H -0.01 -0.50 7.37 -2.38 -0.02 -0.52 16 5 C -0.50 -27.34 7.25 25.60 0.19 -27.15 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.64 5.28 84.65 0.45 1.09 16 8 N -0.92 -53.75 11.38 21.45 0.24 -53.51 16 9 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.68 -28.55 6.06 -473.19 -2.87 -31.41 16 14 C 0.09 3.31 2.28 44.93 0.10 3.42 16 15 H 0.02 0.83 7.16 -2.38 -0.02 0.81 16 16 C -0.11 -2.98 5.35 30.61 0.16 -2.82 16 17 C -0.07 -1.48 5.67 29.74 0.17 -1.31 16 18 C -0.12 -3.20 5.74 -19.83 -0.11 -3.31 16 19 C -0.08 -1.61 9.60 22.35 0.21 -1.39 16 20 C -0.21 -4.41 9.04 22.30 0.20 -4.20 16 21 C 0.11 3.04 6.68 22.44 0.15 3.19 16 22 O -0.34 -8.56 10.50 -92.33 -0.97 -9.53 16 23 C 0.02 0.26 9.82 113.37 1.11 1.38 16 24 C -0.18 -5.70 9.55 22.46 0.21 -5.49 16 25 C -0.04 -1.27 5.74 -19.86 -0.11 -1.38 16 26 C -0.06 -2.30 5.16 29.74 0.15 -2.14 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.90 6.64 -2.39 -0.02 1.88 16 29 H 0.04 2.11 6.85 -2.39 -0.02 2.09 16 30 H 0.06 3.19 6.22 -2.39 -0.01 3.17 16 31 H 0.02 1.01 7.50 -2.39 -0.02 1.00 16 32 H 0.26 14.38 8.31 -92.71 -0.77 13.60 16 33 H 0.34 12.91 6.13 -89.70 -0.55 12.36 16 34 H 0.08 1.87 7.94 -2.39 -0.02 1.85 16 35 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.10 1.64 8.12 -2.39 -0.02 1.62 16 38 H 0.16 2.13 8.05 -2.91 -0.02 2.11 16 39 H 0.16 2.21 6.33 -2.91 -0.02 2.20 16 40 H 0.07 0.75 7.67 -2.38 -0.02 0.73 16 41 H 0.06 0.76 7.67 -2.39 -0.02 0.74 16 42 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.11 3.77 8.05 -2.91 -0.02 3.74 16 44 H 0.04 1.85 7.71 -2.39 -0.02 1.83 16 45 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -65.22 349.19 2.68 -62.54 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.42 Total: 24.75 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.83 Total: -39.40 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.62 Total: -84.92 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.97 Total: -9.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -65.22 2.68 -62.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255399.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.287 kcal (2) G-P(sol) polarization free energy of solvation -65.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds