Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46958 * 2 1 4 4 H 1.08998 * 109.47087 * 305.64668 * 3 2 1 5 5 C 1.50699 * 109.46907 * 185.64254 * 3 2 1 6 6 H 1.07995 * 120.00284 * 239.99759 * 5 3 2 7 7 C 1.37878 * 120.00044 * 60.00629 * 5 3 2 8 8 N 1.31520 * 119.99894 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00267 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47309 * 59.99612 * 9 7 5 11 11 H 1.48504 * 109.47511 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47257 * 299.99718 * 9 7 5 13 13 N 1.46901 * 109.46971 * 65.64611 * 3 2 1 14 14 C 1.46895 * 111.00000 * 204.48554 * 13 3 2 15 15 H 1.09004 * 109.68081 * 325.64203 * 14 13 3 16 16 C 1.53331 * 109.68749 * 205.12429 * 14 13 3 17 17 C 1.52721 * 108.38481 * 170.37354 * 16 14 13 18 18 C 1.50647 * 110.59517 * 51.11329 * 17 16 14 19 19 C 1.38961 * 117.68720 * 162.49505 * 18 17 16 20 20 C 1.37835 * 120.62817 * 179.71386 * 19 18 17 21 21 C 1.38765 * 119.70928 * 359.91524 * 20 19 18 22 22 O 1.35896 * 120.17628 * 179.82245 * 21 20 19 23 23 C 1.42900 * 116.99586 * 0.02562 * 22 21 20 24 24 C 1.38426 * 119.64953 * 0.09728 * 21 20 19 25 25 C 1.37706 * 122.54380 * 342.28478 * 18 17 16 26 26 C 1.50640 * 122.56394 * 0.61351 * 25 18 17 27 27 H 1.09003 * 109.46977 * 293.79995 * 1 2 3 28 28 H 1.09006 * 109.47182 * 53.80054 * 1 2 3 29 29 H 1.09002 * 109.46973 * 173.79775 * 1 2 3 30 30 H 1.09002 * 109.46833 * 240.00280 * 2 1 3 31 31 H 1.09003 * 109.47062 * 120.00207 * 2 1 3 32 32 H 0.96997 * 120.00231 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99783 * 328.43595 * 13 3 2 34 34 H 1.09007 * 109.67865 * 50.64705 * 16 14 13 35 35 H 1.09003 * 109.70911 * 290.11509 * 16 14 13 36 36 H 1.09007 * 109.25054 * 290.83222 * 17 16 14 37 37 H 1.08993 * 109.22196 * 171.38762 * 17 16 14 38 38 H 1.07997 * 119.68855 * 359.74615 * 19 18 17 39 39 H 1.07996 * 120.15075 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47467 * 60.00059 * 23 22 21 41 41 H 1.09006 * 109.47324 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47392 * 300.00001 * 23 22 21 43 43 H 1.08003 * 119.74234 * 180.02562 * 24 21 20 44 44 H 1.08998 * 109.25769 * 222.01038 * 26 25 18 45 45 H 1.09001 * 109.22072 * 102.56194 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6316 7 6 4.1301 0.8832 -1.2523 8 7 3.3830 0.3450 -2.1914 9 14 5.9900 0.8866 -1.4259 10 1 6.5947 0.1483 -0.2881 11 1 6.3695 0.2269 -2.7011 12 1 6.4846 2.2868 -1.4262 13 7 1.6647 2.0945 1.2618 14 6 1.5959 3.5530 1.1006 15 1 2.3547 3.8799 0.3895 16 6 1.8295 4.2339 2.4544 17 6 1.9921 5.7338 2.2175 18 6 0.8550 6.2651 1.3842 19 6 0.6409 7.6381 1.3845 20 6 -0.3787 8.1899 0.6390 21 6 -1.1984 7.3672 -0.1205 22 8 -2.2088 7.9008 -0.8561 23 6 -2.3711 9.3195 -0.8024 24 6 -0.9850 5.9995 -0.1203 25 6 0.0408 5.4463 0.6340 26 6 0.2106 3.9500 0.5945 27 1 -0.3633 0.4147 0.9403 28 1 -0.3634 0.6070 -0.8293 29 1 -0.3633 -1.0217 -0.1110 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7978 -0.0505 -2.9740 33 1 0.7926 1.7280 1.6127 34 1 2.7332 3.8348 2.9150 35 1 0.9752 4.0559 3.1076 36 1 2.9334 5.9158 1.6987 37 1 2.0056 6.2494 3.1777 38 1 1.2797 8.2790 1.9740 39 1 -0.5385 9.2580 0.6452 40 1 -1.4619 9.8031 -1.1594 41 1 -3.2102 9.6134 -1.4331 42 1 -2.5650 9.6243 0.2260 43 1 -1.6218 5.3578 -0.7112 44 1 0.0891 3.6013 -0.4310 45 1 -0.5485 3.4859 1.2242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133255587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -31.821294 kcal Electronic energy + Delta-G solvation = -23284.783733 eV Core-core repulsion = 20073.392470 eV Total energy + Delta-G solvation = -3211.391262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35481 -38.64385 -36.59646 -34.43426 -32.48382 -31.84360 -30.71477 -29.14950 -28.02703 -26.85600 -25.89116 -23.36371 -22.61992 -22.11945 -21.38020 -19.64782 -19.03380 -17.66488 -16.35149 -16.09443 -15.81983 -15.58063 -14.92949 -14.59350 -14.20859 -13.93739 -13.73059 -13.45058 -13.35744 -13.12220 -12.74581 -12.42072 -12.32753 -12.12534 -11.97446 -11.84311 -11.63514 -11.21827 -11.03987 -10.83011 -10.63323 -10.62448 -10.49745 -10.37070 -10.16134 -9.91907 -9.64643 -9.43004 -9.03795 -8.63301 -8.31060 -7.93676 -7.17859 -5.92805 -3.96708 1.41516 1.52331 3.22078 3.36655 3.40781 3.44119 3.80732 4.47896 4.74851 4.83757 4.94671 4.97031 5.01322 5.23213 5.26709 5.30885 5.33038 5.36303 5.42819 5.58946 5.73429 5.83795 5.86527 6.09324 6.11189 6.16138 6.19103 6.19798 6.29690 6.32132 6.38057 6.43708 6.49216 6.75342 6.77957 6.86042 6.88907 6.95012 7.13587 7.23335 7.41343 7.56568 7.82241 7.96268 8.35837 8.44292 8.81424 9.11103 9.68114 11.12465 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.003961 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.540758 B = 7067.572553 C = 7314.578704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.680 5.680 14 C 0.098 3.902 15 H 0.086 0.914 16 C -0.107 4.107 17 C -0.076 4.076 18 C -0.107 4.107 19 C -0.084 4.084 20 C -0.213 4.213 21 C 0.117 3.883 22 O -0.320 6.320 23 C 0.029 3.971 24 C -0.154 4.154 25 C -0.021 4.021 26 C -0.111 4.111 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.040 0.960 32 H 0.259 0.741 33 H 0.317 0.683 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.053 0.947 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 14.509 5.984 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.309 5.309 14 C -0.014 4.014 15 H 0.104 0.896 16 C -0.145 4.145 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.102 4.102 20 C -0.232 4.232 21 C 0.073 3.927 22 O -0.234 6.234 23 C -0.066 4.066 24 C -0.173 4.173 25 C -0.021 4.021 26 C -0.150 4.150 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.071 0.929 43 H 0.145 0.855 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.808 14.297 5.915 17.804 hybrid contribution 0.116 0.450 -0.733 0.868 sum -8.692 14.747 5.183 17.886 Atomic orbital electron populations 1.21884 0.99651 0.99687 0.99492 1.21770 0.91181 1.00489 1.03020 1.19169 0.95343 0.89882 0.84438 0.97966 1.21186 0.91349 1.36457 1.04159 0.92135 1.24949 0.97967 0.95708 0.95889 1.69862 1.34698 1.39512 1.09578 0.86633 0.85962 0.78111 0.77091 1.20341 1.21524 1.20457 1.60814 1.35455 1.01685 1.32948 1.21448 0.94130 0.89793 0.95988 0.89608 1.21558 1.02177 0.92881 0.97857 1.20439 0.95992 0.96740 0.98130 1.19647 0.98376 0.92780 0.99881 1.20924 0.96660 0.94518 0.98087 1.21062 0.99742 0.99378 1.03014 1.18874 0.88574 0.92891 0.92375 1.86058 1.48878 1.23178 1.65298 1.22994 1.02239 0.79285 1.02061 1.20462 1.01019 0.91976 1.03858 1.19504 0.92907 0.95922 0.93812 1.21384 1.00409 0.90492 1.02725 0.94620 0.93914 0.94466 0.88314 0.94098 0.93091 0.86564 0.90603 0.92657 0.90686 0.91385 0.86094 0.85922 0.92824 0.88522 0.92886 0.85542 0.90525 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.63 37.16 0.36 -2.51 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 3 C 0.22 5.32 1.85 -68.86 -0.13 5.19 16 4 H 0.00 0.07 7.30 -51.93 -0.38 -0.31 16 5 C -0.49 -13.45 8.48 -34.44 -0.29 -13.74 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.45 11.29 55.43 0.63 -24.83 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.68 -13.92 6.06 -100.92 -0.61 -14.54 16 14 C 0.10 1.78 2.28 -67.68 -0.15 1.62 16 15 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 16 C -0.11 -1.64 5.60 -26.70 -0.15 -1.79 16 17 C -0.08 -1.02 5.67 -28.05 -0.16 -1.18 16 18 C -0.11 -1.53 5.74 -104.57 -0.60 -2.13 16 19 C -0.08 -1.06 9.60 -39.46 -0.38 -1.44 16 20 C -0.21 -2.63 9.04 -39.53 -0.36 -2.99 16 21 C 0.12 1.64 6.68 -39.32 -0.26 1.38 16 22 O -0.32 -4.13 10.50 -19.41 -0.20 -4.33 16 23 C 0.03 0.24 9.82 101.05 0.99 1.24 16 24 C -0.15 -2.33 9.55 -39.29 -0.38 -2.70 16 25 C -0.02 -0.32 5.74 -104.63 -0.60 -0.92 16 26 C -0.11 -1.83 4.97 -28.05 -0.14 -1.97 16 27 H 0.03 0.61 6.67 -51.93 -0.35 0.26 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.32 5.95 6.21 -39.29 -0.24 5.71 16 34 H 0.08 1.22 8.14 -51.92 -0.42 0.79 16 35 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 37 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 38 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 39 H 0.12 1.18 6.33 -52.49 -0.33 0.85 16 40 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 43 H 0.13 1.83 8.05 -52.48 -0.42 1.41 16 44 H 0.08 1.37 7.62 -51.93 -0.40 0.97 16 45 H 0.07 1.12 7.94 -51.93 -0.41 0.71 16 LS Contribution 352.23 15.07 5.31 5.31 Total: -1.00 -29.16 352.23 -9.76 -38.92 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.38 Total: 6.55 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: -2.48 Total: -23.59 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.01 Total: -39.36 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.20 Total: -4.33 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.16 -9.76 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.103 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds