Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46958 * 2 1 4 4 H 1.08998 * 109.47087 * 305.64668 * 3 2 1 5 5 C 1.50699 * 109.46907 * 185.64254 * 3 2 1 6 6 H 1.07995 * 120.00284 * 239.99759 * 5 3 2 7 7 C 1.37878 * 120.00044 * 60.00629 * 5 3 2 8 8 N 1.31520 * 119.99894 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00267 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47309 * 59.99612 * 9 7 5 11 11 H 1.48504 * 109.47511 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47257 * 299.99718 * 9 7 5 13 13 N 1.46901 * 109.46971 * 65.64611 * 3 2 1 14 14 C 1.46895 * 111.00000 * 204.48554 * 13 3 2 15 15 H 1.09004 * 109.68081 * 325.64203 * 14 13 3 16 16 C 1.53331 * 109.68749 * 205.12429 * 14 13 3 17 17 C 1.52721 * 108.38481 * 170.37354 * 16 14 13 18 18 C 1.50647 * 110.59517 * 51.11329 * 17 16 14 19 19 C 1.38961 * 117.68720 * 162.49505 * 18 17 16 20 20 C 1.37835 * 120.62817 * 179.71386 * 19 18 17 21 21 C 1.38765 * 119.70928 * 359.91524 * 20 19 18 22 22 O 1.35896 * 120.17628 * 179.82245 * 21 20 19 23 23 C 1.42900 * 116.99586 * 0.02562 * 22 21 20 24 24 C 1.38426 * 119.64953 * 0.09728 * 21 20 19 25 25 C 1.37706 * 122.54380 * 342.28478 * 18 17 16 26 26 C 1.50640 * 122.56394 * 0.61351 * 25 18 17 27 27 H 1.09003 * 109.46977 * 293.79995 * 1 2 3 28 28 H 1.09006 * 109.47182 * 53.80054 * 1 2 3 29 29 H 1.09002 * 109.46973 * 173.79775 * 1 2 3 30 30 H 1.09002 * 109.46833 * 240.00280 * 2 1 3 31 31 H 1.09003 * 109.47062 * 120.00207 * 2 1 3 32 32 H 0.96997 * 120.00231 * 180.02562 * 8 7 5 33 33 H 1.00900 * 110.99783 * 328.43595 * 13 3 2 34 34 H 1.09007 * 109.67865 * 50.64705 * 16 14 13 35 35 H 1.09003 * 109.70911 * 290.11509 * 16 14 13 36 36 H 1.09007 * 109.25054 * 290.83222 * 17 16 14 37 37 H 1.08993 * 109.22196 * 171.38762 * 17 16 14 38 38 H 1.07997 * 119.68855 * 359.74615 * 19 18 17 39 39 H 1.07996 * 120.15075 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47467 * 60.00059 * 23 22 21 41 41 H 1.09006 * 109.47324 * 179.97438 * 23 22 21 42 42 H 1.08996 * 109.47392 * 300.00001 * 23 22 21 43 43 H 1.08003 * 119.74234 * 180.02562 * 24 21 20 44 44 H 1.08998 * 109.25769 * 222.01038 * 26 25 18 45 45 H 1.09001 * 109.22072 * 102.56194 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6316 7 6 4.1301 0.8832 -1.2523 8 7 3.3830 0.3450 -2.1914 9 14 5.9900 0.8866 -1.4259 10 1 6.5947 0.1483 -0.2881 11 1 6.3695 0.2269 -2.7011 12 1 6.4846 2.2868 -1.4262 13 7 1.6647 2.0945 1.2618 14 6 1.5959 3.5530 1.1006 15 1 2.3547 3.8799 0.3895 16 6 1.8295 4.2339 2.4544 17 6 1.9921 5.7338 2.2175 18 6 0.8550 6.2651 1.3842 19 6 0.6409 7.6381 1.3845 20 6 -0.3787 8.1899 0.6390 21 6 -1.1984 7.3672 -0.1205 22 8 -2.2088 7.9008 -0.8561 23 6 -2.3711 9.3195 -0.8024 24 6 -0.9850 5.9995 -0.1203 25 6 0.0408 5.4463 0.6340 26 6 0.2106 3.9500 0.5945 27 1 -0.3633 0.4147 0.9403 28 1 -0.3634 0.6070 -0.8293 29 1 -0.3633 -1.0217 -0.1110 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7978 -0.0505 -2.9740 33 1 0.7926 1.7280 1.6127 34 1 2.7332 3.8348 2.9150 35 1 0.9752 4.0559 3.1076 36 1 2.9334 5.9158 1.6987 37 1 2.0056 6.2494 3.1777 38 1 1.2797 8.2790 1.9740 39 1 -0.5385 9.2580 0.6452 40 1 -1.4619 9.8031 -1.1594 41 1 -3.2102 9.6134 -1.4331 42 1 -2.5650 9.6243 0.2260 43 1 -1.6218 5.3578 -0.7112 44 1 0.0891 3.6013 -0.4310 45 1 -0.5485 3.4859 1.2242 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133255587.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -48.119650 kcal Electronic energy + Delta-G solvation = -23285.490482 eV Core-core repulsion = 20073.392470 eV Total energy + Delta-G solvation = -3212.098012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40657 -39.78084 -38.09218 -35.92231 -34.01393 -33.40648 -32.19271 -30.16596 -29.47414 -28.01605 -27.44831 -24.91052 -24.08812 -23.20403 -22.65420 -21.48928 -20.31489 -18.67982 -18.24880 -17.34136 -16.91793 -16.63985 -16.52442 -16.08243 -15.63943 -15.34244 -15.01801 -14.76771 -14.56517 -14.39073 -14.23625 -13.74833 -13.66383 -13.51364 -13.21064 -13.06488 -12.93561 -12.75779 -12.70839 -12.54324 -12.20266 -11.96915 -11.88296 -11.70402 -11.60279 -11.49854 -11.43908 -11.11201 -10.94085 -10.40915 -9.72824 -8.99278 -8.91205 -8.04222 -6.15973 0.35866 0.46857 1.42185 1.43579 1.51136 2.37537 2.45382 2.74869 3.20622 3.55530 3.79406 3.90780 3.97148 4.10336 4.15534 4.26020 4.32147 4.39786 4.40124 4.50998 4.57696 4.58757 4.62016 4.68991 4.71846 4.73337 4.88078 4.92943 5.00955 5.05701 5.10111 5.14895 5.23387 5.30415 5.36838 5.39958 5.45858 5.54021 5.65005 5.74961 5.78728 5.88701 5.93578 6.40102 6.48020 6.56492 6.98096 7.06564 7.52972 8.98618 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017869 B = 0.003961 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.540758 B = 7067.572553 C = 7314.578704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.228 3.772 4 H -0.033 1.033 5 C -0.511 4.511 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.099 3.901 15 H 0.047 0.953 16 C -0.098 4.098 17 C -0.070 4.070 18 C -0.121 4.121 19 C -0.079 4.079 20 C -0.207 4.207 21 C 0.111 3.889 22 O -0.341 6.341 23 C 0.019 3.981 24 C -0.177 4.177 25 C -0.040 4.040 26 C -0.099 4.099 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.259 0.741 33 H 0.328 0.672 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.063 0.937 41 H 0.117 0.883 42 H 0.068 0.932 43 H 0.118 0.882 44 H 0.050 0.950 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.627 16.687 7.574 20.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.120 3.880 4 H -0.015 1.015 5 C -0.550 4.550 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.309 5.309 14 C -0.012 4.012 15 H 0.065 0.935 16 C -0.136 4.136 17 C -0.107 4.107 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.226 4.226 21 C 0.066 3.934 22 O -0.255 6.255 23 C -0.075 4.075 24 C -0.196 4.196 25 C -0.041 4.041 26 C -0.138 4.138 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.082 0.918 41 H 0.135 0.865 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.068 0.932 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.099 16.492 7.519 20.281 hybrid contribution 0.139 -0.134 -1.257 1.272 sum -8.960 16.358 6.261 19.674 Atomic orbital electron populations 1.21747 0.96360 1.01011 1.00466 1.21597 0.94152 0.99150 1.01136 1.18894 0.93808 0.90461 0.84881 1.01515 1.21477 0.92987 1.36397 1.04091 0.93173 1.25676 1.02168 0.95443 0.95636 1.70002 1.36222 1.40012 1.09866 0.85686 0.80982 0.78191 0.77199 1.19704 1.21060 1.20045 1.60742 1.36272 1.03061 1.30819 1.21396 0.94071 0.88498 0.97190 0.93483 1.21471 1.02320 0.94084 0.95752 1.20424 0.95464 0.95312 0.99539 1.19816 0.98389 0.93782 1.00088 1.21266 0.96739 0.93918 0.97784 1.21425 0.98691 1.00823 1.01623 1.18996 0.89109 0.92649 0.92598 1.86037 1.48471 1.25857 1.65129 1.23338 1.03653 0.76876 1.03668 1.20493 1.01449 0.93092 1.04525 1.19434 0.94189 0.95122 0.95354 1.21154 0.99404 0.92053 1.01190 0.92228 0.94718 0.92539 0.91574 0.94437 0.93196 0.85340 0.91340 0.91263 0.91215 0.88240 0.82919 0.82751 0.91810 0.86499 0.91374 0.86374 0.93174 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.63 71.98 0.69 -4.58 16 2 C -0.12 -5.82 5.36 30.60 0.16 -5.66 16 3 C 0.23 11.55 1.85 44.17 0.08 11.63 16 4 H -0.03 -1.86 7.30 -2.39 -0.02 -1.88 16 5 C -0.51 -28.87 8.48 25.60 0.22 -28.65 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 7 C 0.01 0.49 5.29 84.65 0.45 0.94 16 8 N -0.92 -54.00 11.29 21.45 0.24 -53.76 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 13 N -0.68 -28.48 6.06 -473.20 -2.87 -31.35 16 14 C 0.10 3.73 2.28 44.94 0.10 3.84 16 15 H 0.05 2.12 7.58 -2.39 -0.02 2.11 16 16 C -0.10 -2.94 5.60 30.61 0.17 -2.77 16 17 C -0.07 -1.77 5.67 29.74 0.17 -1.60 16 18 C -0.12 -3.29 5.74 -19.83 -0.11 -3.41 16 19 C -0.08 -1.76 9.60 22.35 0.21 -1.54 16 20 C -0.21 -4.51 9.04 22.30 0.20 -4.30 16 21 C 0.11 2.98 6.68 22.44 0.15 3.13 16 22 O -0.34 -8.33 10.50 -92.38 -0.97 -9.30 16 23 C 0.02 0.26 9.82 113.37 1.11 1.37 16 24 C -0.18 -5.42 9.55 22.46 0.21 -5.20 16 25 C -0.04 -1.26 5.74 -19.87 -0.11 -1.37 16 26 C -0.10 -3.39 4.97 29.74 0.15 -3.24 16 27 H 0.06 1.97 6.67 -2.39 -0.02 1.95 16 28 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.61 5.94 -2.39 -0.01 3.60 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.26 14.56 8.31 -92.71 -0.77 13.78 16 33 H 0.33 12.31 6.21 -89.69 -0.56 11.75 16 34 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.07 1.89 8.10 -2.39 -0.02 1.87 16 36 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.10 1.91 8.12 -2.39 -0.02 1.89 16 38 H 0.15 2.39 8.05 -2.91 -0.02 2.36 16 39 H 0.15 2.31 6.33 -2.91 -0.02 2.29 16 40 H 0.06 0.75 7.67 -2.39 -0.02 0.74 16 41 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 43 H 0.12 3.64 8.05 -2.91 -0.02 3.61 16 44 H 0.05 1.93 7.62 -2.39 -0.02 1.92 16 45 H 0.08 2.62 7.94 -2.39 -0.02 2.60 16 Total: -1.00 -65.60 352.23 2.70 -62.90 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.41 Total: 25.99 kcal Atomic # 6 Polarization: -45.29 SS G_CDS: 3.86 Total: -41.43 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -2.63 Total: -85.10 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.97 Total: -9.30 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.60 2.70 -62.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255587.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.783 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds