Wall clock time and date at job start Tue Mar 31 2020 05:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 H 1.09005 * 109.47103 * 54.61966 * 3 2 1 5 5 C 1.50696 * 109.47346 * 174.62065 * 3 2 1 6 6 H 1.07998 * 119.99773 * 119.99974 * 5 3 2 7 7 C 1.37878 * 120.00038 * 300.00304 * 5 3 2 8 8 N 1.31520 * 119.99934 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47113 * 119.99622 * 9 7 5 12 12 H 1.48495 * 109.46920 * 239.99954 * 9 7 5 13 13 N 1.46899 * 109.47225 * 294.62158 * 3 2 1 14 14 C 1.46898 * 111.00188 * 154.65313 * 13 3 2 15 15 H 1.09006 * 109.67632 * 32.73813 * 14 13 3 16 16 C 1.53326 * 109.68188 * 153.28975 * 14 13 3 17 17 C 1.52727 * 108.37838 * 189.64425 * 16 14 13 18 18 C 1.50657 * 110.58339 * 308.86914 * 17 16 14 19 19 C 1.38956 * 117.68400 * 197.54297 * 18 17 16 20 20 C 1.37832 * 120.62732 * 180.29634 * 19 18 17 21 21 C 1.38758 * 119.70777 * 0.02562 * 20 19 18 22 22 O 1.35905 * 120.17335 * 179.89904 * 21 20 19 23 23 C 1.42898 * 116.99643 * 359.97438 * 22 21 20 24 24 C 1.38423 * 119.65671 * 359.89817 * 21 20 19 25 25 C 1.37709 * 122.54474 * 17.66244 * 18 17 16 26 26 C 1.50644 * 122.56993 * 359.52604 * 25 18 17 27 27 H 1.09007 * 109.46944 * 60.38457 * 1 2 3 28 28 H 1.08998 * 109.47028 * 180.37638 * 1 2 3 29 29 H 1.08990 * 109.47224 * 300.38033 * 1 2 3 30 30 H 1.09002 * 109.47127 * 240.00043 * 2 1 3 31 31 H 1.08993 * 109.47025 * 120.00109 * 2 1 3 32 32 H 0.96996 * 119.99596 * 180.02562 * 8 7 5 33 33 H 1.00904 * 110.99756 * 30.70796 * 13 3 2 34 34 H 1.08995 * 109.68933 * 309.37281 * 16 14 13 35 35 H 1.09004 * 109.68186 * 69.93565 * 16 14 13 36 36 H 1.09003 * 109.24943 * 188.58519 * 17 16 14 37 37 H 1.08999 * 109.22153 * 69.13770 * 17 16 14 38 38 H 1.08000 * 119.68656 * 0.31251 * 19 18 17 39 39 H 1.08001 * 120.14244 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47460 * 300.00185 * 23 22 21 41 41 H 1.08997 * 109.47001 * 60.00479 * 23 22 21 42 42 H 1.09007 * 109.47097 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.75168 * 180.02562 * 24 21 20 44 44 H 1.08996 * 109.25217 * 257.27460 * 26 25 18 45 45 H 1.08997 * 109.21861 * 137.82640 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9834 0.8379 5 6 3.5411 1.4446 0.1332 6 1 4.1511 1.8875 -0.6401 7 6 4.1356 0.8812 1.2423 8 7 3.3926 0.3422 2.1842 9 14 5.9963 0.8832 1.4071 10 1 6.5975 1.5447 0.2213 11 1 6.3836 1.6215 2.6359 12 1 6.4869 -0.5157 1.4947 13 7 1.6592 2.0965 -1.2590 14 6 1.5714 3.5531 -1.0901 15 1 2.3050 3.8822 -0.3541 16 6 1.8383 4.2456 -2.4318 17 6 1.9795 5.7453 -2.1799 18 6 0.8128 6.2598 -1.3774 19 6 0.5851 7.6306 -1.3753 20 6 -0.4616 8.1674 -0.6569 21 6 -1.2957 7.3315 0.0717 22 8 -2.3293 7.8509 0.7851 23 6 -2.4999 9.2690 0.7412 24 6 -1.0696 5.9659 0.0682 25 6 -0.0162 5.4278 -0.6585 26 6 0.1679 3.9331 -0.6227 27 1 -0.3633 0.5079 -0.8935 28 1 -0.3633 -1.0276 0.0068 29 1 -0.3633 0.5197 0.8865 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8108 -0.0539 2.9646 33 1 0.7926 1.7208 -1.6140 34 1 2.7589 3.8583 -2.8682 35 1 1.0050 4.0644 -3.1107 36 1 2.0170 6.2683 -3.1355 37 1 2.9030 5.9317 -1.6317 38 1 1.2342 8.2815 -1.9422 39 1 -0.6317 9.2339 -0.6611 40 1 -1.6040 9.7549 1.1275 41 1 -2.6681 9.5829 -0.2889 42 1 -3.3577 9.5508 1.3520 43 1 -1.7181 5.3138 0.6345 44 1 -0.5677 3.4646 -1.2765 45 1 0.0202 3.5777 0.3971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133255760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:01 Heat of formation + Delta-G solvation = -31.428282 kcal Electronic energy + Delta-G solvation = -23279.004009 eV Core-core repulsion = 20067.629789 eV Total energy + Delta-G solvation = -3211.374220 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.35777 -38.64557 -36.60252 -34.43783 -32.48773 -31.84865 -30.71097 -29.14995 -28.03275 -26.86386 -25.89290 -23.35882 -22.62830 -22.12308 -21.38729 -19.65296 -19.03069 -17.66613 -16.35377 -16.10190 -15.82338 -15.58124 -14.92963 -14.59267 -14.21332 -13.94738 -13.72883 -13.45591 -13.36252 -13.12685 -12.75273 -12.42691 -12.32646 -12.12198 -11.97038 -11.84773 -11.64052 -11.22388 -11.04866 -10.85480 -10.62641 -10.59284 -10.49389 -10.37542 -10.15900 -9.92656 -9.64353 -9.42964 -9.02864 -8.63728 -8.31785 -7.94001 -7.17869 -5.93233 -3.96888 1.41119 1.52034 3.21773 3.33652 3.41697 3.46741 3.80403 4.47857 4.74594 4.83379 4.94494 4.96862 5.01061 5.22939 5.26498 5.30745 5.32630 5.36140 5.42513 5.58641 5.73180 5.83282 5.86378 6.09001 6.10825 6.15488 6.19388 6.19659 6.29901 6.32000 6.37857 6.43434 6.48832 6.75642 6.77544 6.85584 6.88581 6.94601 7.12985 7.22366 7.40999 7.56171 7.82152 7.96706 8.35748 8.44246 8.81121 9.11682 9.68100 11.12135 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003946 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.530534 B = 7093.635044 C = 7371.248893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.003 0.997 5 C -0.491 4.491 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.097 3.903 15 H 0.085 0.915 16 C -0.106 4.106 17 C -0.076 4.076 18 C -0.106 4.106 19 C -0.084 4.084 20 C -0.213 4.213 21 C 0.117 3.883 22 O -0.320 6.320 23 C 0.030 3.970 24 C -0.154 4.154 25 C -0.021 4.021 26 C -0.111 4.111 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.258 0.742 33 H 0.317 0.683 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.518 14.494 -6.014 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.529 4.529 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.014 4.014 15 H 0.103 0.897 16 C -0.144 4.144 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.102 4.102 20 C -0.232 4.232 21 C 0.073 3.927 22 O -0.234 6.234 23 C -0.066 4.066 24 C -0.173 4.173 25 C -0.022 4.022 26 C -0.150 4.150 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.145 0.855 44 H 0.092 0.908 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.975 14.295 -5.959 17.900 hybrid contribution 0.099 0.419 0.751 0.866 sum -8.876 14.714 -5.208 17.956 Atomic orbital electron populations 1.21885 0.99656 0.99553 0.99641 1.21773 0.91182 1.00503 1.03027 1.19174 0.95365 0.89882 0.84488 0.97945 1.21264 0.91317 1.36130 1.04230 0.92011 1.24957 0.97997 0.95737 0.95897 1.69884 1.34537 1.39641 1.09595 0.86522 0.85998 0.77551 0.77825 1.19780 1.21303 1.21200 1.60818 1.35782 1.01459 1.32876 1.21451 0.93762 0.89883 0.96269 0.89673 1.21556 1.02226 0.92805 0.97851 1.20446 0.95644 0.96847 0.98386 1.19651 0.98160 0.92742 1.00106 1.20925 0.96549 0.94616 0.98100 1.21062 0.99221 0.99330 1.03571 1.18872 0.88133 0.92980 0.92735 1.86059 1.47116 1.23396 1.66848 1.22995 1.02262 0.79325 1.01998 1.20459 1.00652 0.92099 1.04106 1.19503 0.92787 0.95909 0.93973 1.21381 1.00363 0.90553 1.02672 0.94597 0.94478 0.93901 0.94105 0.88311 0.93214 0.86516 0.90585 0.92656 0.91379 0.90683 0.86089 0.85918 0.92820 0.92888 0.88522 0.85545 0.90834 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.74 37.16 0.36 -2.50 16 2 C -0.13 -2.94 5.36 -26.73 -0.14 -3.08 16 3 C 0.22 5.30 1.85 -68.87 -0.13 5.17 16 4 H 0.00 0.08 7.41 -51.93 -0.39 -0.31 16 5 C -0.49 -13.38 8.53 -34.44 -0.29 -13.68 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.45 11.29 55.43 0.63 -24.82 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 13 N -0.68 -13.92 6.07 -100.92 -0.61 -14.53 16 14 C 0.10 1.78 2.28 -67.68 -0.15 1.62 16 15 H 0.09 1.81 7.60 -51.93 -0.39 1.41 16 16 C -0.11 -1.64 5.60 -26.70 -0.15 -1.79 16 17 C -0.08 -1.03 5.67 -28.04 -0.16 -1.18 16 18 C -0.11 -1.53 5.74 -104.57 -0.60 -2.13 16 19 C -0.08 -1.06 9.60 -39.46 -0.38 -1.43 16 20 C -0.21 -2.62 9.04 -39.54 -0.36 -2.98 16 21 C 0.12 1.63 6.68 -39.32 -0.26 1.37 16 22 O -0.32 -4.11 10.50 -19.44 -0.20 -4.32 16 23 C 0.03 0.24 9.82 101.05 0.99 1.23 16 24 C -0.15 -2.32 9.55 -39.29 -0.38 -2.69 16 25 C -0.02 -0.32 5.74 -104.62 -0.60 -0.92 16 26 C -0.11 -1.81 4.99 -28.05 -0.14 -1.95 16 27 H 0.04 0.61 6.46 -51.92 -0.34 0.28 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.32 5.95 6.07 -39.29 -0.24 5.71 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 1.23 8.05 -52.49 -0.42 0.80 16 39 H 0.12 1.18 6.33 -52.49 -0.33 0.85 16 40 H 0.05 0.40 7.67 -51.93 -0.40 0.00 16 41 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.13 1.82 8.05 -52.49 -0.42 1.39 16 44 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.08 1.35 7.74 -51.93 -0.40 0.95 16 LS Contribution 352.30 15.07 5.31 5.31 Total: -1.00 -29.21 352.30 -9.76 -38.97 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -7.37 Total: 6.46 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -2.48 Total: -23.54 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.01 Total: -39.36 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.21 -9.76 -38.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.539 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds