Wall clock time and date at job start Tue Mar 31 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47119 * 2 1 4 4 H 1.09005 * 109.47103 * 54.61966 * 3 2 1 5 5 C 1.50696 * 109.47346 * 174.62065 * 3 2 1 6 6 H 1.07998 * 119.99773 * 119.99974 * 5 3 2 7 7 C 1.37878 * 120.00038 * 300.00304 * 5 3 2 8 8 N 1.31520 * 119.99934 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00146 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46950 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47113 * 119.99622 * 9 7 5 12 12 H 1.48495 * 109.46920 * 239.99954 * 9 7 5 13 13 N 1.46899 * 109.47225 * 294.62158 * 3 2 1 14 14 C 1.46898 * 111.00188 * 154.65313 * 13 3 2 15 15 H 1.09006 * 109.67632 * 32.73813 * 14 13 3 16 16 C 1.53326 * 109.68188 * 153.28975 * 14 13 3 17 17 C 1.52727 * 108.37838 * 189.64425 * 16 14 13 18 18 C 1.50657 * 110.58339 * 308.86914 * 17 16 14 19 19 C 1.38956 * 117.68400 * 197.54297 * 18 17 16 20 20 C 1.37832 * 120.62732 * 180.29634 * 19 18 17 21 21 C 1.38758 * 119.70777 * 0.02562 * 20 19 18 22 22 O 1.35905 * 120.17335 * 179.89904 * 21 20 19 23 23 C 1.42898 * 116.99643 * 359.97438 * 22 21 20 24 24 C 1.38423 * 119.65671 * 359.89817 * 21 20 19 25 25 C 1.37709 * 122.54474 * 17.66244 * 18 17 16 26 26 C 1.50644 * 122.56993 * 359.52604 * 25 18 17 27 27 H 1.09007 * 109.46944 * 60.38457 * 1 2 3 28 28 H 1.08998 * 109.47028 * 180.37638 * 1 2 3 29 29 H 1.08990 * 109.47224 * 300.38033 * 1 2 3 30 30 H 1.09002 * 109.47127 * 240.00043 * 2 1 3 31 31 H 1.08993 * 109.47025 * 120.00109 * 2 1 3 32 32 H 0.96996 * 119.99596 * 180.02562 * 8 7 5 33 33 H 1.00904 * 110.99756 * 30.70796 * 13 3 2 34 34 H 1.08995 * 109.68933 * 309.37281 * 16 14 13 35 35 H 1.09004 * 109.68186 * 69.93565 * 16 14 13 36 36 H 1.09003 * 109.24943 * 188.58519 * 17 16 14 37 37 H 1.08999 * 109.22153 * 69.13770 * 17 16 14 38 38 H 1.08000 * 119.68656 * 0.31251 * 19 18 17 39 39 H 1.08001 * 120.14244 * 180.02562 * 20 19 18 40 40 H 1.08998 * 109.47460 * 300.00185 * 23 22 21 41 41 H 1.08997 * 109.47001 * 60.00479 * 23 22 21 42 42 H 1.09007 * 109.47097 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.75168 * 180.02562 * 24 21 20 44 44 H 1.08996 * 109.25217 * 257.27460 * 26 25 18 45 45 H 1.08997 * 109.21861 * 137.82640 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9834 0.8379 5 6 3.5411 1.4446 0.1332 6 1 4.1511 1.8875 -0.6401 7 6 4.1356 0.8812 1.2423 8 7 3.3926 0.3422 2.1842 9 14 5.9963 0.8832 1.4071 10 1 6.5975 1.5447 0.2213 11 1 6.3836 1.6215 2.6359 12 1 6.4869 -0.5157 1.4947 13 7 1.6592 2.0965 -1.2590 14 6 1.5714 3.5531 -1.0901 15 1 2.3050 3.8822 -0.3541 16 6 1.8383 4.2456 -2.4318 17 6 1.9795 5.7453 -2.1799 18 6 0.8128 6.2598 -1.3774 19 6 0.5851 7.6306 -1.3753 20 6 -0.4616 8.1674 -0.6569 21 6 -1.2957 7.3315 0.0717 22 8 -2.3293 7.8509 0.7851 23 6 -2.4999 9.2690 0.7412 24 6 -1.0696 5.9659 0.0682 25 6 -0.0162 5.4278 -0.6585 26 6 0.1679 3.9331 -0.6227 27 1 -0.3633 0.5079 -0.8935 28 1 -0.3633 -1.0276 0.0068 29 1 -0.3633 0.5197 0.8865 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8108 -0.0539 2.9646 33 1 0.7926 1.7208 -1.6140 34 1 2.7589 3.8583 -2.8682 35 1 1.0050 4.0644 -3.1107 36 1 2.0170 6.2683 -3.1355 37 1 2.9030 5.9317 -1.6317 38 1 1.2342 8.2815 -1.9422 39 1 -0.6317 9.2339 -0.6611 40 1 -1.6040 9.7549 1.1275 41 1 -2.6681 9.5829 -0.2889 42 1 -3.3577 9.5508 1.3520 43 1 -1.7181 5.3138 0.6345 44 1 -0.5677 3.4646 -1.2765 45 1 0.0202 3.5777 0.3971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133255760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:00 Heat of formation + Delta-G solvation = -47.752342 kcal Electronic energy + Delta-G solvation = -23279.711874 eV Core-core repulsion = 20067.629789 eV Total energy + Delta-G solvation = -3212.082084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40587 -39.78004 -38.09702 -35.92362 -34.01849 -33.40727 -32.18723 -30.16306 -29.48255 -28.02166 -27.44545 -24.90593 -24.09688 -23.20331 -22.65728 -21.49165 -20.31153 -18.67506 -18.25870 -17.34351 -16.91752 -16.63855 -16.52106 -16.08309 -15.64065 -15.34746 -15.02369 -14.77121 -14.56803 -14.39580 -14.23570 -13.75537 -13.66192 -13.50483 -13.20966 -13.07675 -12.93860 -12.77906 -12.70880 -12.50003 -12.19424 -11.97658 -11.89499 -11.70303 -11.59704 -11.50114 -11.43827 -11.10418 -10.94078 -10.41627 -9.72753 -8.99245 -8.91188 -8.04584 -6.16126 0.35925 0.46938 1.40366 1.42429 1.54256 2.37593 2.45303 2.74973 3.20426 3.55180 3.79470 3.90568 3.97120 4.10300 4.15581 4.25915 4.32194 4.39842 4.40240 4.51160 4.57691 4.58641 4.62073 4.68874 4.71705 4.73429 4.87927 4.92866 5.00588 5.05796 5.09947 5.14872 5.23033 5.30196 5.36201 5.39977 5.45617 5.54067 5.65035 5.75068 5.78841 5.88621 5.93733 6.40074 6.48071 6.56643 6.98535 7.06312 7.52989 8.98627 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003946 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.530534 B = 7093.635044 C = 7371.248893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.227 3.773 4 H -0.033 1.033 5 C -0.508 4.508 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.679 5.679 14 C 0.099 3.901 15 H 0.046 0.954 16 C -0.098 4.098 17 C -0.070 4.070 18 C -0.120 4.120 19 C -0.079 4.079 20 C -0.207 4.207 21 C 0.111 3.889 22 O -0.341 6.341 23 C 0.019 3.981 24 C -0.176 4.176 25 C -0.040 4.040 26 C -0.099 4.099 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.259 0.741 33 H 0.328 0.672 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.085 0.915 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 16.653 -7.556 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.119 3.881 4 H -0.015 1.015 5 C -0.547 4.547 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.562 5.562 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.309 5.309 14 C -0.012 4.012 15 H 0.065 0.935 16 C -0.136 4.136 17 C -0.108 4.108 18 C -0.121 4.121 19 C -0.097 4.097 20 C -0.226 4.226 21 C 0.066 3.934 22 O -0.255 6.255 23 C -0.075 4.075 24 C -0.195 4.195 25 C -0.041 4.041 26 C -0.138 4.138 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.088 0.912 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.103 0.897 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.299 16.469 -7.513 20.351 hybrid contribution 0.132 -0.160 1.262 1.279 sum -9.167 16.309 -6.251 19.725 Atomic orbital electron populations 1.21749 0.96363 1.01137 1.00358 1.21599 0.94154 0.99156 1.01150 1.18898 0.93837 0.90470 0.84902 1.01508 1.21531 0.92939 1.36077 1.04121 0.93166 1.25682 1.02191 0.95479 0.95645 1.70018 1.36092 1.40129 1.09920 0.85571 0.81012 0.77668 0.77778 1.19336 1.20975 1.20607 1.60747 1.36605 1.02827 1.30768 1.21400 0.93895 0.88575 0.97295 0.93528 1.21468 1.02244 0.94022 0.95873 1.20429 0.95142 0.95408 0.99774 1.19815 0.98164 0.93731 1.00357 1.21264 0.96704 0.94038 0.97712 1.21423 0.98214 1.00756 1.02168 1.18996 0.88699 0.92753 0.92907 1.86038 1.46697 1.26084 1.66668 1.23337 1.03684 0.76934 1.03581 1.20492 1.01022 0.93199 1.04812 1.19434 0.94017 0.95130 0.95519 1.21153 0.99242 0.92100 1.01273 0.92344 0.92405 0.94706 0.94427 0.91572 0.93221 0.85302 0.91430 0.91270 0.88266 0.91229 0.82943 0.82759 0.91818 0.91378 0.86499 0.86321 0.89679 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.74 71.98 0.70 -4.58 16 2 C -0.12 -5.83 5.36 30.59 0.16 -5.66 16 3 C 0.23 11.51 1.85 44.17 0.08 11.59 16 4 H -0.03 -1.86 7.41 -2.38 -0.02 -1.88 16 5 C -0.51 -28.69 8.53 25.60 0.22 -28.47 16 6 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 7 C 0.01 0.44 5.29 84.65 0.45 0.89 16 8 N -0.92 -53.98 11.29 21.45 0.24 -53.74 16 9 Si 0.95 44.92 29.54 68.60 2.03 46.95 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.68 -28.49 6.07 -473.21 -2.87 -31.36 16 14 C 0.10 3.72 2.28 44.94 0.10 3.83 16 15 H 0.05 2.10 7.60 -2.38 -0.02 2.08 16 16 C -0.10 -2.95 5.60 30.61 0.17 -2.78 16 17 C -0.07 -1.78 5.67 29.74 0.17 -1.61 16 18 C -0.12 -3.28 5.74 -19.83 -0.11 -3.40 16 19 C -0.08 -1.76 9.60 22.35 0.21 -1.54 16 20 C -0.21 -4.49 9.04 22.30 0.20 -4.29 16 21 C 0.11 2.96 6.68 22.44 0.15 3.11 16 22 O -0.34 -8.28 10.50 -92.48 -0.97 -9.25 16 23 C 0.02 0.26 9.82 113.37 1.11 1.37 16 24 C -0.18 -5.37 9.55 22.46 0.21 -5.15 16 25 C -0.04 -1.25 5.74 -19.87 -0.11 -1.36 16 26 C -0.10 -3.36 4.99 29.74 0.15 -3.21 16 27 H 0.06 1.94 6.46 -2.38 -0.02 1.92 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 3.61 5.95 -2.39 -0.01 3.60 16 32 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.33 12.31 6.07 -89.69 -0.54 11.76 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.07 1.89 8.10 -2.38 -0.02 1.87 16 36 H 0.10 1.92 8.12 -2.39 -0.02 1.90 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.15 2.39 8.05 -2.91 -0.02 2.36 16 39 H 0.15 2.30 6.33 -2.91 -0.02 2.28 16 40 H 0.06 0.75 7.67 -2.39 -0.02 0.73 16 41 H 0.07 0.73 7.67 -2.39 -0.02 0.72 16 42 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.12 3.62 8.05 -2.91 -0.02 3.59 16 44 H 0.08 2.61 7.93 -2.39 -0.02 2.59 16 45 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 Total: -1.00 -65.63 352.30 2.72 -62.91 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.42 Total: 25.75 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.87 Total: -41.27 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -2.63 Total: -85.10 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.97 Total: -9.25 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.63 2.72 -62.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.162 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds