Wall clock time and date at job start Tue Mar 31 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 H 1.08993 * 109.47331 * 174.73701 * 3 2 1 5 5 C 1.50701 * 109.47411 * 54.73273 * 3 2 1 6 6 H 1.08000 * 119.99610 * 240.00303 * 5 3 2 7 7 C 1.37876 * 119.99957 * 60.00168 * 5 3 2 8 8 N 1.31508 * 119.99861 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99978 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47329 * 270.00157 * 9 7 5 11 11 H 1.48502 * 109.47204 * 150.00056 * 9 7 5 12 12 H 1.48503 * 109.47129 * 30.00228 * 9 7 5 13 13 N 1.46902 * 109.46757 * 294.73296 * 3 2 1 14 14 C 1.46897 * 111.00406 * 273.74578 * 13 3 2 15 15 H 1.09006 * 109.67490 * 34.95911 * 14 13 3 16 16 C 1.53316 * 109.68295 * 155.50945 * 14 13 3 17 17 C 1.52731 * 108.37913 * 189.60807 * 16 14 13 18 18 C 1.50650 * 110.58131 * 308.81713 * 17 16 14 19 19 C 1.38962 * 117.69212 * 197.52993 * 18 17 16 20 20 C 1.37825 * 120.62887 * 180.56944 * 19 18 17 21 21 C 1.38763 * 119.71281 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.17508 * 179.89319 * 21 20 19 23 23 C 1.42892 * 117.00208 * 0.02562 * 22 21 20 24 24 C 1.38427 * 119.64788 * 359.87363 * 21 20 19 25 25 C 1.37710 * 122.54045 * 17.86740 * 18 17 16 26 26 C 1.50641 * 122.56383 * 359.24872 * 25 18 17 27 27 H 1.08999 * 109.47203 * 305.47964 * 1 2 3 28 28 H 1.08999 * 109.47579 * 65.47956 * 1 2 3 29 29 H 1.09003 * 109.47140 * 185.48333 * 1 2 3 30 30 H 1.08996 * 109.46717 * 239.99387 * 2 1 3 31 31 H 1.09002 * 109.46842 * 119.99709 * 2 1 3 32 32 H 0.97007 * 119.99686 * 180.02562 * 8 7 5 33 33 H 1.00905 * 111.00359 * 37.70040 * 13 3 2 34 34 H 1.09000 * 109.68550 * 309.33107 * 16 14 13 35 35 H 1.08997 * 109.68253 * 69.88859 * 16 14 13 36 36 H 1.09001 * 109.24897 * 188.53756 * 17 16 14 37 37 H 1.08996 * 109.25723 * 69.10579 * 17 16 14 38 38 H 1.08000 * 119.68174 * 0.59723 * 19 18 17 39 39 H 1.07994 * 120.14435 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.47110 * 300.00169 * 23 22 21 41 41 H 1.09000 * 109.47483 * 59.99997 * 23 22 21 42 42 H 1.09003 * 109.47489 * 180.02562 * 23 22 21 43 43 H 1.08010 * 119.74373 * 180.02562 * 24 21 20 44 44 H 1.09000 * 109.25212 * 257.44519 * 26 25 18 45 45 H 1.09001 * 109.22313 * 137.99866 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1258 1.4439 0.0943 5 6 1.4340 2.1896 1.1600 6 1 0.8252 3.0634 0.9807 7 6 1.6569 1.7576 2.4503 8 7 1.1285 2.4099 3.4626 9 14 2.7093 0.2457 2.7603 10 1 1.8480 -0.9639 2.7686 11 1 3.3903 0.3775 4.0734 12 1 3.7265 0.1218 1.6855 13 7 1.6568 2.0972 -1.2580 14 6 2.6514 1.8421 -2.3085 15 1 3.0591 0.8379 -2.1919 16 6 1.9929 1.9760 -3.6866 17 6 2.9770 1.4745 -4.7414 18 6 4.3192 2.1370 -4.5708 19 6 5.2041 2.0883 -5.6412 20 6 6.4527 2.6644 -5.5468 21 6 6.8300 3.2997 -4.3723 22 8 8.0596 3.8690 -4.2683 23 6 8.9157 3.7770 -5.4087 24 6 5.9472 3.3509 -3.3074 25 6 4.6897 2.7709 -3.4057 26 6 3.7778 2.8689 -2.2107 27 1 -0.3633 0.5965 0.8368 28 1 -0.3634 0.4265 -0.9349 29 1 -0.3633 -1.0230 0.0982 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.2856 2.1061 4.3704 33 1 0.7370 1.8049 -1.5523 34 1 1.0832 1.3763 -3.7186 35 1 1.7509 3.0214 -3.8778 36 1 2.5873 1.7022 -5.7336 37 1 3.0933 0.3955 -4.6404 38 1 4.9105 1.5946 -6.5558 39 1 7.1340 2.6222 -6.3836 40 1 9.0974 2.7280 -5.6430 41 1 8.4395 4.2623 -6.2606 42 1 9.8634 4.2701 -5.1923 43 1 6.2391 3.8454 -2.3926 44 1 3.3486 3.8699 -2.1673 45 1 4.3538 2.6852 -1.3037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133255941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:03 Heat of formation + Delta-G solvation = -21.271303 kcal Electronic energy + Delta-G solvation = -23300.032692 eV Core-core repulsion = 20089.098911 eV Total energy + Delta-G solvation = -3210.933780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42935 -38.76278 -36.94811 -34.70920 -32.53085 -31.96098 -30.81679 -29.26362 -28.12057 -26.88437 -26.28618 -23.44186 -22.98677 -22.18762 -21.79777 -19.51966 -19.15826 -17.67563 -16.46081 -16.23156 -15.88601 -15.73104 -15.18419 -15.01999 -14.40670 -13.99641 -13.65618 -13.55533 -13.23588 -13.18726 -13.02128 -12.87953 -12.49530 -12.38901 -12.12289 -11.98953 -11.88270 -11.38230 -11.19267 -10.91893 -10.73782 -10.67731 -10.61099 -10.51901 -10.26289 -10.04486 -9.80686 -9.32780 -9.06908 -8.67914 -8.50439 -8.01645 -7.39082 -6.01108 -3.96428 1.35694 1.44454 3.17412 3.28414 3.38583 3.40575 3.73967 4.43956 4.64144 4.72184 4.83138 4.93144 4.93448 5.00307 5.11115 5.23234 5.25681 5.29302 5.30369 5.45862 5.62208 5.72793 5.78476 5.87762 5.93544 5.97406 5.99316 6.03249 6.12401 6.19421 6.23312 6.29904 6.41923 6.46377 6.57133 6.60300 6.74198 6.83120 6.88517 6.91823 7.03264 7.29989 7.36206 7.77809 7.97036 8.38641 8.74225 9.10917 9.62433 11.12310 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.004056 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.895782 B = 6902.271365 C = 7719.306666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.159 4.159 3 C 0.186 3.814 4 H 0.033 0.967 5 C -0.488 4.488 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.879 3.121 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.668 5.668 14 C 0.088 3.912 15 H 0.038 0.962 16 C -0.120 4.120 17 C -0.072 4.072 18 C -0.114 4.114 19 C -0.083 4.083 20 C -0.215 4.215 21 C 0.120 3.880 22 O -0.319 6.319 23 C 0.029 3.971 24 C -0.154 4.154 25 C -0.021 4.021 26 C -0.073 4.073 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.048 0.952 32 H 0.262 0.738 33 H 0.334 0.666 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.130 0.870 44 H 0.091 0.909 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 -1.479 -19.905 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.050 0.950 5 C -0.527 4.527 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.299 5.299 14 C -0.023 4.023 15 H 0.056 0.944 16 C -0.158 4.158 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.101 4.101 20 C -0.234 4.234 21 C 0.076 3.924 22 O -0.233 6.233 23 C -0.066 4.066 24 C -0.172 4.172 25 C -0.022 4.022 26 C -0.110 4.110 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.148 0.852 44 H 0.109 0.891 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.806 -0.752 -19.362 21.717 hybrid contribution 0.635 -2.001 -0.198 2.109 sum 10.441 -2.754 -19.560 22.343 Atomic orbital electron populations 1.21648 0.95792 0.99586 1.02447 1.22496 0.97247 1.01176 0.98850 1.19729 0.95916 0.88117 0.88589 0.94950 1.20905 1.31026 1.12658 0.88077 0.90011 1.24885 0.95534 0.96537 0.96223 1.69881 1.45097 1.40238 0.98808 0.86999 0.81213 0.83994 0.76849 1.20703 1.22495 1.19554 1.60617 1.03690 1.62817 1.02791 1.21395 0.93520 0.96404 0.90946 0.94374 1.21740 0.97566 1.02153 0.94296 1.20379 0.91681 0.99489 0.99384 1.19571 0.96787 1.01500 0.93591 1.20892 0.92867 0.98166 0.98155 1.21056 0.98909 1.05622 0.97773 1.18893 0.84961 0.94178 0.94391 1.86069 1.23839 1.73811 1.39563 1.23003 0.93707 1.01742 0.88141 1.20471 0.93149 1.05096 0.98513 1.19639 0.93392 0.94229 0.94953 1.20550 0.94996 1.01311 0.94171 0.89988 0.94080 0.95182 0.94952 0.93409 0.92787 0.84669 0.91661 0.90928 0.91130 0.91137 0.86186 0.85899 0.92867 0.92841 0.88460 0.85187 0.89128 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.40 37.16 0.35 -2.36 16 2 C -0.16 -3.36 5.20 -26.73 -0.14 -3.50 16 3 C 0.19 4.24 1.74 -68.87 -0.12 4.13 16 4 H 0.03 0.79 6.30 -51.93 -0.33 0.46 16 5 C -0.49 -13.31 7.83 -34.44 -0.27 -13.58 16 6 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 7 C 0.07 1.96 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 9 Si 0.88 21.90 24.32 -169.99 -4.13 17.77 16 10 H -0.28 -6.82 6.92 56.52 0.39 -6.43 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 13 N -0.67 -13.04 6.05 -100.93 -0.61 -13.65 16 14 C 0.09 1.45 2.30 -67.69 -0.16 1.29 16 15 H 0.04 0.67 7.17 -51.93 -0.37 0.29 16 16 C -0.12 -1.58 5.36 -26.71 -0.14 -1.73 16 17 C -0.07 -0.84 5.67 -28.04 -0.16 -1.00 16 18 C -0.11 -1.50 5.74 -104.57 -0.60 -2.10 16 19 C -0.08 -0.96 9.60 -39.46 -0.38 -1.34 16 20 C -0.21 -2.48 9.04 -39.54 -0.36 -2.84 16 21 C 0.12 1.61 6.68 -39.32 -0.26 1.35 16 22 O -0.32 -3.97 10.50 -19.41 -0.20 -4.18 16 23 C 0.03 0.23 9.82 101.05 0.99 1.22 16 24 C -0.15 -2.23 9.55 -39.29 -0.38 -2.61 16 25 C -0.02 -0.32 5.74 -104.63 -0.60 -0.92 16 26 C -0.07 -1.19 5.13 -28.05 -0.14 -1.33 16 27 H 0.08 1.86 6.84 -51.93 -0.36 1.50 16 28 H 0.04 0.71 6.65 -51.93 -0.35 0.37 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.03 0.61 7.48 -51.93 -0.39 0.22 16 31 H 0.05 1.09 3.42 -51.93 -0.18 0.91 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.33 6.13 6.16 -39.29 -0.24 5.89 16 34 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.12 1.09 8.05 -52.49 -0.42 0.66 16 39 H 0.12 1.10 6.33 -52.49 -0.33 0.77 16 40 H 0.05 0.37 7.67 -51.92 -0.40 -0.03 16 41 H 0.05 0.36 7.67 -51.93 -0.40 -0.04 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.13 1.85 8.05 -52.48 -0.42 1.42 16 44 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 45 H 0.08 1.38 7.59 -51.93 -0.39 0.99 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -30.37 342.08 -8.60 -38.98 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.12 Total: 5.88 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -2.46 Total: -23.46 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.16 Total: -40.15 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.20 Total: -4.18 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.13 Total: 17.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.37 -8.60 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.705 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds