Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 H 1.08993 * 109.47331 * 174.73701 * 3 2 1 5 5 C 1.50701 * 109.47411 * 54.73273 * 3 2 1 6 6 H 1.08000 * 119.99610 * 240.00303 * 5 3 2 7 7 C 1.37876 * 119.99957 * 60.00168 * 5 3 2 8 8 N 1.31508 * 119.99861 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 119.99978 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47329 * 270.00157 * 9 7 5 11 11 H 1.48502 * 109.47204 * 150.00056 * 9 7 5 12 12 H 1.48503 * 109.47129 * 30.00228 * 9 7 5 13 13 N 1.46902 * 109.46757 * 294.73296 * 3 2 1 14 14 C 1.46897 * 111.00406 * 273.74578 * 13 3 2 15 15 H 1.09006 * 109.67490 * 34.95911 * 14 13 3 16 16 C 1.53316 * 109.68295 * 155.50945 * 14 13 3 17 17 C 1.52731 * 108.37913 * 189.60807 * 16 14 13 18 18 C 1.50650 * 110.58131 * 308.81713 * 17 16 14 19 19 C 1.38962 * 117.69212 * 197.52993 * 18 17 16 20 20 C 1.37825 * 120.62887 * 180.56944 * 19 18 17 21 21 C 1.38763 * 119.71281 * 359.97438 * 20 19 18 22 22 O 1.35896 * 120.17508 * 179.89319 * 21 20 19 23 23 C 1.42892 * 117.00208 * 0.02562 * 22 21 20 24 24 C 1.38427 * 119.64788 * 359.87363 * 21 20 19 25 25 C 1.37710 * 122.54045 * 17.86740 * 18 17 16 26 26 C 1.50641 * 122.56383 * 359.24872 * 25 18 17 27 27 H 1.08999 * 109.47203 * 305.47964 * 1 2 3 28 28 H 1.08999 * 109.47579 * 65.47956 * 1 2 3 29 29 H 1.09003 * 109.47140 * 185.48333 * 1 2 3 30 30 H 1.08996 * 109.46717 * 239.99387 * 2 1 3 31 31 H 1.09002 * 109.46842 * 119.99709 * 2 1 3 32 32 H 0.97007 * 119.99686 * 180.02562 * 8 7 5 33 33 H 1.00905 * 111.00359 * 37.70040 * 13 3 2 34 34 H 1.09000 * 109.68550 * 309.33107 * 16 14 13 35 35 H 1.08997 * 109.68253 * 69.88859 * 16 14 13 36 36 H 1.09001 * 109.24897 * 188.53756 * 17 16 14 37 37 H 1.08996 * 109.25723 * 69.10579 * 17 16 14 38 38 H 1.08000 * 119.68174 * 0.59723 * 19 18 17 39 39 H 1.07994 * 120.14435 * 180.02562 * 20 19 18 40 40 H 1.09008 * 109.47110 * 300.00169 * 23 22 21 41 41 H 1.09000 * 109.47483 * 59.99997 * 23 22 21 42 42 H 1.09003 * 109.47489 * 180.02562 * 23 22 21 43 43 H 1.08010 * 119.74373 * 180.02562 * 24 21 20 44 44 H 1.09000 * 109.25212 * 257.44519 * 26 25 18 45 45 H 1.09001 * 109.22313 * 137.99866 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1258 1.4439 0.0943 5 6 1.4340 2.1896 1.1600 6 1 0.8252 3.0634 0.9807 7 6 1.6569 1.7576 2.4503 8 7 1.1285 2.4099 3.4626 9 14 2.7093 0.2457 2.7603 10 1 1.8480 -0.9639 2.7686 11 1 3.3903 0.3775 4.0734 12 1 3.7265 0.1218 1.6855 13 7 1.6568 2.0972 -1.2580 14 6 2.6514 1.8421 -2.3085 15 1 3.0591 0.8379 -2.1919 16 6 1.9929 1.9760 -3.6866 17 6 2.9770 1.4745 -4.7414 18 6 4.3192 2.1370 -4.5708 19 6 5.2041 2.0883 -5.6412 20 6 6.4527 2.6644 -5.5468 21 6 6.8300 3.2997 -4.3723 22 8 8.0596 3.8690 -4.2683 23 6 8.9157 3.7770 -5.4087 24 6 5.9472 3.3509 -3.3074 25 6 4.6897 2.7709 -3.4057 26 6 3.7778 2.8689 -2.2107 27 1 -0.3633 0.5965 0.8368 28 1 -0.3634 0.4265 -0.9349 29 1 -0.3633 -1.0230 0.0982 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.2856 2.1061 4.3704 33 1 0.7370 1.8049 -1.5523 34 1 1.0832 1.3763 -3.7186 35 1 1.7509 3.0214 -3.8778 36 1 2.5873 1.7022 -5.7336 37 1 3.0933 0.3955 -4.6404 38 1 4.9105 1.5946 -6.5558 39 1 7.1340 2.6222 -6.3836 40 1 9.0974 2.7280 -5.6430 41 1 8.4395 4.2623 -6.2606 42 1 9.8634 4.2701 -5.1923 43 1 6.2391 3.8454 -2.3926 44 1 3.3486 3.8699 -2.1673 45 1 4.3538 2.6852 -1.3037 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133255941.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = -40.531736 kcal Electronic energy + Delta-G solvation = -23300.867887 eV Core-core repulsion = 20089.098911 eV Total energy + Delta-G solvation = -3211.768976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40613 -39.84404 -38.36500 -36.04535 -34.06687 -33.47739 -32.22069 -30.21546 -29.47183 -28.13308 -27.61668 -25.12624 -24.23301 -23.18910 -22.96113 -21.21080 -20.33387 -18.63144 -18.42652 -17.23329 -17.12687 -16.74077 -16.59502 -16.49385 -15.54260 -15.40600 -14.95577 -14.82349 -14.60958 -14.54657 -14.27762 -14.23341 -13.93317 -13.72263 -13.25454 -13.00468 -12.93468 -12.74813 -12.67495 -12.50939 -12.33136 -12.17761 -11.75575 -11.63567 -11.58148 -11.44510 -11.42258 -11.13295 -11.03958 -10.66659 -9.71496 -8.99056 -8.95952 -8.23180 -6.21538 0.37017 0.47369 1.27820 1.33751 1.41798 2.33361 2.37944 2.76000 3.11868 3.39158 3.76052 3.88978 3.94897 4.08615 4.18466 4.21035 4.27341 4.34367 4.36002 4.38197 4.40066 4.50237 4.54929 4.64739 4.71104 4.72566 4.83807 4.85962 4.93503 5.03242 5.05698 5.10156 5.14283 5.18608 5.19834 5.29517 5.39853 5.42754 5.49486 5.61485 5.74389 5.76864 5.89970 6.11665 6.48983 6.74515 6.82840 6.86878 7.41642 8.94179 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020287 B = 0.004056 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.895782 B = 6902.271365 C = 7719.306666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.156 4.156 3 C 0.193 3.807 4 H 0.017 0.983 5 C -0.482 4.482 6 H 0.038 0.962 7 C 0.015 3.985 8 N -0.950 5.950 9 Si 0.938 3.062 10 H -0.265 1.265 11 H -0.302 1.302 12 H -0.258 1.258 13 N -0.679 5.679 14 C 0.090 3.910 15 H 0.034 0.966 16 C -0.113 4.113 17 C -0.067 4.067 18 C -0.122 4.122 19 C -0.077 4.077 20 C -0.208 4.208 21 C 0.112 3.888 22 O -0.343 6.343 23 C 0.019 3.981 24 C -0.180 4.180 25 C -0.040 4.040 26 C -0.067 4.067 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.341 0.659 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.074 0.926 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -3.764 -23.777 26.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.083 3.917 4 H 0.035 0.965 5 C -0.521 4.521 6 H 0.057 0.943 7 C -0.181 4.181 8 N -0.591 5.591 9 Si 0.766 3.234 10 H -0.191 1.191 11 H -0.230 1.230 12 H -0.183 1.183 13 N -0.311 5.311 14 C -0.020 4.020 15 H 0.052 0.948 16 C -0.151 4.151 17 C -0.104 4.104 18 C -0.122 4.122 19 C -0.095 4.095 20 C -0.227 4.227 21 C 0.067 3.933 22 O -0.257 6.257 23 C -0.075 4.075 24 C -0.199 4.199 25 C -0.040 4.040 26 C -0.105 4.105 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.174 0.826 39 H 0.172 0.828 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.092 0.908 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.671 -3.041 -23.271 25.781 hybrid contribution 0.420 -1.155 0.920 1.535 sum 11.091 -4.196 -22.351 25.302 Atomic orbital electron populations 1.21569 0.94684 1.00622 1.02086 1.22411 0.98230 0.99336 0.99568 1.19438 0.94448 0.89235 0.88596 0.96537 1.21117 1.29649 1.11374 0.89941 0.94348 1.25613 0.96929 0.99553 0.96015 1.70031 1.47370 1.42448 0.99295 0.86028 0.79922 0.80870 0.76580 1.19104 1.22975 1.18307 1.60435 1.04931 1.62940 1.02749 1.21441 0.92813 0.95859 0.91905 0.94757 1.21693 0.98467 1.02458 0.92445 1.20415 0.90178 0.99783 1.00012 1.19826 0.98055 1.01132 0.93231 1.21275 0.92237 0.97285 0.98687 1.21428 0.99489 1.04064 0.97698 1.19006 0.85217 0.94451 0.94646 1.86042 1.23877 1.73801 1.41968 1.23335 0.93776 1.03072 0.87320 1.20493 0.94096 1.06308 0.98976 1.19486 0.93218 0.96189 0.95154 1.20397 0.95205 1.00561 0.94330 0.93766 0.91776 0.92687 0.91924 0.94773 0.92847 0.83812 0.90025 0.91373 0.88194 0.90023 0.82650 0.82808 0.91603 0.91445 0.86649 0.86783 0.90781 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.40 71.98 0.68 -4.31 16 2 C -0.16 -6.36 5.20 30.59 0.16 -6.20 16 3 C 0.19 8.89 1.74 44.17 0.08 8.97 16 4 H 0.02 0.83 6.30 -2.39 -0.02 0.81 16 5 C -0.48 -27.37 7.83 25.60 0.20 -27.17 16 6 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 7 C 0.02 0.90 5.42 84.66 0.46 1.36 16 8 N -0.95 -59.96 13.96 21.45 0.30 -59.67 16 9 Si 0.94 45.92 24.32 68.60 1.67 47.59 16 10 H -0.27 -12.27 6.92 99.48 0.69 -11.58 16 11 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 12 H -0.26 -12.04 6.53 99.48 0.65 -11.39 16 13 N -0.68 -26.58 6.05 -473.23 -2.86 -29.45 16 14 C 0.09 2.90 2.30 44.93 0.10 3.00 16 15 H 0.03 1.15 7.17 -2.38 -0.02 1.13 16 16 C -0.11 -2.71 5.36 30.61 0.16 -2.54 16 17 C -0.07 -1.29 5.67 29.74 0.17 -1.12 16 18 C -0.12 -2.91 5.74 -19.83 -0.11 -3.02 16 19 C -0.08 -1.47 9.60 22.35 0.21 -1.26 16 20 C -0.21 -4.13 9.04 22.30 0.20 -3.93 16 21 C 0.11 2.87 6.68 22.44 0.15 3.02 16 22 O -0.34 -8.22 10.50 -92.38 -0.97 -9.19 16 23 C 0.02 0.25 9.82 113.37 1.11 1.36 16 24 C -0.18 -5.40 9.55 22.46 0.21 -5.19 16 25 C -0.04 -1.18 5.74 -19.87 -0.11 -1.29 16 26 C -0.07 -2.29 5.13 29.74 0.15 -2.14 16 27 H 0.04 2.00 6.84 -2.39 -0.02 1.98 16 28 H 0.06 2.08 6.65 -2.39 -0.02 2.07 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.06 2.18 7.48 -2.39 -0.02 2.16 16 31 H 0.03 1.48 3.42 -2.39 -0.01 1.48 16 32 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 33 H 0.34 12.23 6.16 -89.69 -0.55 11.67 16 34 H 0.08 1.71 7.94 -2.39 -0.02 1.69 16 35 H 0.07 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.10 1.42 8.12 -2.39 -0.02 1.40 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.16 1.88 8.05 -2.91 -0.02 1.86 16 39 H 0.15 2.03 6.33 -2.91 -0.02 2.01 16 40 H 0.07 0.70 7.67 -2.38 -0.02 0.68 16 41 H 0.07 0.70 7.67 -2.39 -0.02 0.68 16 42 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.11 3.59 8.05 -2.91 -0.02 3.56 16 44 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.05 1.90 7.59 -2.39 -0.02 1.88 16 Total: -1.00 -69.68 342.08 2.31 -67.37 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.35 Total: 23.81 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 3.83 Total: -40.46 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -2.56 Total: -89.11 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.97 Total: -9.19 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -69.68 2.31 -67.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133255941.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.836 kcal (2) G-P(sol) polarization free energy of solvation -69.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds