Wall clock time and date at job start Tue Mar 31 2020 06:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 O 1.42903 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.35904 * 116.99628 * 180.02562 * 4 3 2 6 6 C 1.38756 * 120.14650 * 0.02562 * 5 4 3 7 7 C 1.37923 * 119.80927 * 180.02562 * 6 5 4 8 8 C 1.38773 * 120.45644 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.80990 * 359.76938 * 8 7 6 10 10 C 1.38525 * 120.14470 * 179.72098 * 5 4 3 11 11 C 1.50731 * 121.65358 * 180.53390 * 9 8 7 12 12 C 1.52893 * 109.95489 * 342.80597 * 11 9 8 13 13 N 1.47150 * 108.50116 * 50.48254 * 12 11 9 14 14 C 1.46908 * 110.99940 * 165.33657 * 13 12 11 15 15 C 1.52994 * 109.47013 * 190.00056 * 14 13 12 16 16 C 1.50702 * 109.46947 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00116 * 0.02562 * 16 15 14 18 18 C 1.37885 * 120.00089 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99715 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99881 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47252 * 59.99907 * 20 18 16 22 22 H 1.48498 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47366 * 299.99912 * 20 18 16 24 24 C 1.46624 * 110.27930 * 288.77281 * 13 12 11 25 25 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 29 29 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 32 32 H 1.08001 * 120.09571 * 0.05700 * 6 5 4 33 33 H 1.08004 * 119.76543 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.84865 * 359.97438 * 10 5 4 35 35 H 1.09001 * 109.38564 * 102.95024 * 11 9 8 36 36 H 1.08996 * 109.39381 * 222.65314 * 11 9 8 37 37 H 1.08995 * 109.63126 * 170.19371 * 12 11 9 38 38 H 1.09008 * 109.62653 * 290.57999 * 12 11 9 39 39 H 1.08996 * 109.46830 * 310.00410 * 14 13 12 40 40 H 1.09004 * 109.46764 * 70.00068 * 14 13 12 41 41 H 1.09001 * 109.47440 * 299.99432 * 15 14 13 42 42 H 1.08995 * 109.47449 * 60.00305 * 15 14 13 43 43 H 0.97004 * 120.00227 * 180.02562 * 19 18 16 44 44 H 1.08994 * 109.26951 * 292.27801 * 24 13 12 45 45 H 1.09005 * 109.26649 * 172.80422 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0859 2.6534 -0.0001 6 6 3.3331 3.8190 0.0014 7 6 3.9665 5.0442 0.0013 8 6 5.3521 5.1198 -0.0008 9 6 6.1017 3.9626 0.0019 10 6 5.4691 2.7295 0.0052 11 6 7.6086 3.9962 0.0117 12 6 8.1024 5.3812 -0.4075 13 7 7.3991 6.3914 0.3989 14 6 8.0622 7.6986 0.3002 15 6 7.4623 8.6540 1.3336 16 6 8.1429 9.9948 1.2328 17 1 8.9248 10.1500 0.5041 18 6 7.7674 11.0234 2.0707 19 7 6.8156 10.8342 2.9583 20 14 8.6106 12.6855 1.9452 21 1 8.4094 13.2410 0.5828 22 1 8.0285 13.6129 2.9483 23 1 10.0639 12.5242 2.2042 24 6 5.9947 6.4823 -0.0124 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 2.2544 3.7670 0.0032 33 1 3.3798 5.9511 0.0030 34 1 6.0572 1.8236 0.0093 35 1 7.9690 3.7721 1.0157 36 1 7.9918 3.2496 -0.6838 37 1 9.1757 5.4555 -0.2331 38 1 7.8913 5.5406 -1.4650 39 1 9.1288 7.5802 0.4908 40 1 7.9148 8.1061 -0.7000 41 1 6.3956 8.7725 1.1429 42 1 7.6096 8.2466 2.3338 43 1 6.5511 11.5579 3.5476 44 1 5.9408 6.8968 -1.0189 45 1 5.4602 7.1378 0.6753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134524330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:24 Heat of formation + Delta-G solvation = -48.567207 kcal Electronic energy + Delta-G solvation = -22292.063819 eV Core-core repulsion = 19079.946399 eV Total energy + Delta-G solvation = -3212.117420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.44702 -39.93670 -37.77056 -35.41048 -34.77577 -33.99367 -32.36472 -30.88074 -29.98102 -27.57349 -26.61974 -25.37567 -23.98847 -23.32966 -22.26990 -22.07978 -20.48448 -18.77610 -18.44714 -17.27426 -17.22557 -16.99154 -16.55164 -16.19492 -15.62279 -15.46217 -15.17245 -14.94613 -14.73852 -14.54958 -14.24485 -14.04353 -13.67332 -13.63973 -13.20534 -13.10999 -12.97531 -12.88495 -12.76897 -12.61966 -12.43958 -12.09892 -11.95198 -11.86761 -11.76553 -11.55314 -11.42984 -11.27406 -11.17431 -10.53314 -9.74234 -9.31193 -8.94214 -8.18952 -6.30501 0.35159 0.42078 1.40631 1.44058 1.51882 2.19977 2.40850 2.71370 3.04630 3.14210 3.72572 3.77689 3.92120 3.95072 4.00100 4.10931 4.19346 4.26236 4.32652 4.39997 4.44640 4.50476 4.53299 4.55056 4.63668 4.68208 4.79975 4.80244 4.89727 4.90474 5.05195 5.06977 5.11582 5.16750 5.18213 5.30654 5.36465 5.37579 5.47491 5.57042 5.69284 5.81415 5.82262 6.11228 6.26142 6.33537 6.46638 6.86612 7.38422 8.93004 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.028819 B = 0.002713 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.361481 B =10318.257084 C =11083.477970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C 0.050 3.950 4 O -0.328 6.328 5 C 0.119 3.881 6 C -0.209 4.209 7 C -0.084 4.084 8 C -0.127 4.127 9 C -0.037 4.037 10 C -0.161 4.161 11 C -0.071 4.071 12 C 0.049 3.951 13 N -0.547 5.547 14 C 0.078 3.922 15 C 0.036 3.964 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.103 3.897 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.148 0.852 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.023 0.977 41 H -0.008 1.008 42 H -0.009 1.009 43 H 0.263 0.737 44 H 0.039 0.961 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 -21.462 -8.766 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.025 4.025 4 O -0.242 6.242 5 C 0.074 3.926 6 C -0.227 4.227 7 C -0.103 4.103 8 C -0.128 4.128 9 C -0.037 4.037 10 C -0.180 4.180 11 C -0.108 4.108 12 C -0.079 4.079 13 N -0.272 5.272 14 C -0.049 4.049 15 C -0.001 4.001 16 C -0.583 4.583 17 H 0.080 0.920 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.791 3.209 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.191 1.191 24 C -0.024 4.024 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.041 0.959 41 H 0.010 0.990 42 H 0.009 0.991 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.909 -21.729 -8.140 24.855 hybrid contribution -0.085 1.657 -0.461 1.722 sum -8.994 -20.072 -8.601 23.617 Atomic orbital electron populations 1.21690 0.92921 1.03242 1.02620 1.21491 0.97064 0.93677 1.03526 1.23123 0.77156 1.00081 1.02092 1.86017 1.22818 1.26651 1.88749 1.18992 0.92451 0.84439 0.96720 1.21298 1.00879 0.91574 1.08992 1.21033 0.93507 0.98236 0.97505 1.19650 0.93987 0.94301 1.04818 1.19571 0.96589 0.91201 0.96351 1.20465 0.91684 0.98105 1.07706 1.20604 0.89776 0.96877 1.03496 1.22245 0.99192 0.91580 0.94866 1.62287 1.01953 1.07962 1.54949 1.22039 0.98051 0.87398 0.97387 1.18907 0.94761 0.92795 0.93650 1.21602 1.20349 0.97437 1.18877 0.91986 1.25989 0.95788 1.03278 0.94765 1.70111 1.30938 1.34110 1.22034 0.85471 0.78899 0.78351 0.78130 1.19135 1.20920 1.19065 1.20761 0.89474 0.93903 0.98305 0.92102 0.91906 0.90815 0.90898 0.91122 0.91257 0.91590 0.83486 0.85040 0.83822 0.89608 0.87491 0.89178 0.94398 0.91104 0.95901 0.98959 0.99107 0.92793 0.94321 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.47 6.30 30.59 0.19 -1.28 16 3 C 0.05 0.80 4.74 71.98 0.34 1.14 16 4 O -0.33 -7.48 10.14 -92.47 -0.94 -8.41 16 5 C 0.12 3.03 6.68 22.46 0.15 3.18 16 6 C -0.21 -5.16 9.04 22.32 0.20 -4.96 16 7 C -0.08 -2.40 9.64 22.32 0.22 -2.18 16 8 C -0.13 -4.06 5.80 -19.84 -0.12 -4.18 16 9 C -0.04 -1.05 5.77 -19.86 -0.11 -1.16 16 10 C -0.16 -4.15 9.59 22.42 0.22 -3.94 16 11 C -0.07 -1.75 5.94 29.82 0.18 -1.57 16 12 C 0.05 1.41 5.57 86.22 0.48 1.89 16 13 N -0.55 -20.75 4.68 -901.18 -4.21 -24.97 16 14 C 0.08 3.39 4.89 86.30 0.42 3.81 16 15 C 0.04 1.98 4.91 29.85 0.15 2.13 16 16 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 17 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 19 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 20 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 24 C 0.10 3.81 4.91 85.59 0.42 4.23 16 25 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 31 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 32 H 0.15 2.82 6.32 -2.91 -0.02 2.80 16 33 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 34 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.09 2.37 7.85 -2.39 -0.02 2.35 16 38 H 0.04 1.06 8.06 -2.38 -0.02 1.04 16 39 H 0.07 2.93 7.89 -2.39 -0.02 2.91 16 40 H 0.02 0.97 8.06 -2.38 -0.02 0.95 16 41 H -0.01 -0.46 6.66 -2.39 -0.02 -0.48 16 42 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.04 1.40 8.07 -2.39 -0.02 1.38 16 45 H 0.06 2.74 6.65 -2.38 -0.02 2.72 16 Total: -1.00 -68.07 359.42 2.24 -65.83 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.94 Total: 12.54 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.14 Total: -34.18 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -3.93 Total: -82.43 kcal Atomic # 8 Polarization: -7.48 SS G_CDS: -0.94 Total: -8.41 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.07 2.24 -65.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134524330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.261 kcal (2) G-P(sol) polarization free energy of solvation -68.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds