Wall clock time and date at job start Tue Mar 31 2020 06:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 N 1.46506 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00481 * 264.75146 * 4 3 2 6 6 H 1.08002 * 119.99816 * 146.16471 * 5 4 3 7 7 C 1.38946 * 119.99861 * 326.16225 * 5 4 3 8 8 N 1.31412 * 120.00145 * 337.68720 * 7 5 4 9 9 Si 1.86806 * 119.99828 * 157.68455 * 7 5 4 10 10 H 1.48495 * 109.46847 * 60.00414 * 9 7 5 11 11 H 1.48504 * 109.46726 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46937 * 300.00118 * 9 7 5 13 13 C 1.34786 * 119.99490 * 84.74943 * 4 3 2 14 14 O 1.21293 * 119.99936 * 180.02562 * 13 4 3 15 15 C 1.50705 * 119.99889 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.46742 * 179.97438 * 15 13 4 17 17 C 1.53003 * 109.46735 * 180.02562 * 16 15 13 18 18 H 1.08993 * 109.46955 * 304.99829 * 17 16 15 19 19 C 1.52997 * 109.47272 * 64.99670 * 17 16 15 20 20 C 1.50699 * 109.46555 * 184.99808 * 17 16 15 21 21 C 1.38232 * 120.00365 * 299.72090 * 20 17 16 22 22 C 1.38237 * 120.00013 * 179.80952 * 21 20 17 23 23 C 1.38233 * 119.99928 * 0.40373 * 22 21 20 24 24 C 1.38232 * 120.00055 * 359.85352 * 23 22 21 25 25 C 1.38234 * 120.00102 * 359.95619 * 24 23 22 26 26 H 1.08995 * 109.47745 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47026 * 300.00002 * 1 2 3 28 28 H 1.09007 * 109.47163 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.47026 * 239.99998 * 2 1 3 30 30 H 1.08998 * 109.46602 * 120.00392 * 2 1 3 31 31 H 1.09000 * 109.47152 * 60.00075 * 3 2 1 32 32 H 1.08998 * 109.47682 * 299.99730 * 3 2 1 33 33 H 0.97001 * 119.99971 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47023 * 59.99732 * 15 13 4 35 35 H 1.08993 * 109.46955 * 300.00096 * 15 13 4 36 36 H 1.08998 * 109.47017 * 60.00032 * 16 15 13 37 37 H 1.09000 * 109.46687 * 299.99672 * 16 15 13 38 38 H 1.08999 * 109.47065 * 179.97438 * 19 17 16 39 39 H 1.08999 * 109.47223 * 300.00021 * 19 17 16 40 40 H 1.09002 * 109.46973 * 59.99951 * 19 17 16 41 41 H 1.08003 * 119.99550 * 0.02562 * 21 20 17 42 42 H 1.08003 * 119.99960 * 180.23334 * 22 21 20 43 43 H 1.08000 * 119.99894 * 179.82930 * 23 22 21 44 44 H 1.08001 * 120.00280 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.00185 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5511 1.1831 6 1 5.1329 1.0397 1.3100 7 6 3.6716 2.3193 2.2183 8 7 2.8004 3.2686 1.9595 9 14 4.2127 2.0027 3.9780 10 1 5.6807 2.1978 4.0871 11 1 3.5181 2.9492 4.8873 12 1 3.8689 0.6090 4.3584 13 6 4.1794 1.3354 -1.1615 14 8 5.3923 1.3348 -1.1611 15 6 3.4262 1.2164 -2.4615 16 6 4.4209 1.1102 -3.6192 17 6 3.6563 0.9900 -4.9390 18 1 2.9639 0.1502 -4.8825 19 6 2.8739 2.2798 -5.1944 20 6 4.6313 0.7625 -6.0653 21 6 5.6077 1.7031 -6.3350 22 6 6.5046 1.4925 -7.3656 23 6 6.4197 0.3451 -8.1320 24 6 5.4400 -0.5930 -7.8657 25 6 4.5457 -0.3842 -6.8326 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4381 3.8046 2.6822 34 1 2.8000 2.0976 -2.6005 35 1 2.7992 0.3252 -2.4378 36 1 5.0475 0.2292 -3.4803 37 1 5.0476 2.0018 -3.6426 38 1 2.3296 2.1943 -6.1349 39 1 2.1687 2.4443 -4.3797 40 1 3.5664 3.1197 -5.2509 41 1 5.6721 2.6010 -5.7381 42 1 7.2698 2.2256 -7.5739 43 1 7.1187 0.1819 -8.9389 44 1 5.3734 -1.4892 -8.4647 45 1 3.7804 -1.1174 -6.6243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137852447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:15 Heat of formation + Delta-G solvation = -34.337197 kcal Electronic energy + Delta-G solvation = -22967.925185 eV Core-core repulsion = 19756.424825 eV Total energy + Delta-G solvation = -3211.500360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.55112 -38.55666 -35.84598 -35.04931 -32.78524 -31.22104 -30.92066 -30.75209 -28.67926 -26.05123 -25.21635 -24.02068 -22.76586 -22.08317 -20.92493 -19.71434 -18.58553 -16.92788 -16.74181 -15.94454 -15.38721 -15.17963 -14.72350 -14.48019 -14.33002 -13.77830 -13.63741 -13.49578 -13.30725 -13.23251 -12.87873 -12.34874 -12.24303 -12.09772 -11.69101 -11.50236 -11.45081 -11.40273 -11.17891 -11.09645 -10.91045 -10.62271 -10.57154 -10.42823 -10.31952 -10.26499 -10.10571 -9.84967 -8.89772 -8.89095 -8.64857 -8.29052 -7.42888 -6.28998 -3.89438 1.39479 1.42356 3.21382 3.27006 3.31100 3.81277 3.99061 4.19085 4.67803 4.83263 4.93018 4.99983 5.05520 5.11894 5.24621 5.35554 5.48515 5.53210 5.57346 5.60386 5.68459 5.75966 5.78458 5.88883 5.97849 6.00909 6.08758 6.11318 6.17262 6.20157 6.25640 6.37633 6.41803 6.49135 6.50826 6.52550 6.59490 6.66312 6.74911 6.81675 6.96597 7.03854 7.32952 7.63633 8.29975 8.57278 9.25065 9.48692 10.09480 10.74628 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.003531 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.022722 B = 7928.367892 C = 8577.993893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.102 3.898 4 N -0.444 5.444 5 C -0.307 4.307 6 H 0.090 0.910 7 C 0.035 3.965 8 N -0.871 5.871 9 Si 0.915 3.085 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.456 3.544 14 O -0.585 6.585 15 C -0.134 4.134 16 C -0.089 4.089 17 C -0.056 4.056 18 H 0.076 0.924 19 C -0.145 4.145 20 C -0.066 4.066 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -4.632 -15.138 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.022 4.022 4 N -0.162 5.162 5 C -0.435 4.435 6 H 0.108 0.892 7 C -0.168 4.168 8 N -0.509 5.509 9 Si 0.742 3.258 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.200 1.200 13 C 0.245 3.755 14 O -0.469 6.469 15 C -0.174 4.174 16 C -0.127 4.127 17 C -0.074 4.074 18 H 0.094 0.906 19 C -0.202 4.202 20 C -0.066 4.066 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.715 -4.470 -15.001 15.886 hybrid contribution 0.088 -0.096 0.881 0.891 sum -2.627 -4.566 -14.119 15.070 Atomic orbital electron populations 1.21675 0.96407 1.00603 1.01536 1.21978 0.94821 0.99482 1.01617 1.21644 0.82148 0.94357 1.04058 1.43528 1.04546 1.63157 1.05001 1.19415 1.06712 1.28317 0.89057 0.89200 1.25293 0.97399 0.93754 1.00387 1.69917 1.31138 1.16986 1.32869 0.86177 0.79112 0.78239 0.82285 1.19784 1.21020 1.19968 1.20378 0.88093 0.82053 0.84989 1.90508 1.14263 1.55140 1.86995 1.21675 0.98968 1.02596 0.94182 1.21321 0.97242 1.03278 0.90819 1.20271 0.95404 0.98939 0.92828 0.90579 1.21895 1.00124 0.96793 1.01386 1.19967 0.96336 0.94155 0.96130 1.21084 0.94947 0.99467 0.97452 1.21142 0.99020 0.97645 0.95963 1.21087 0.98927 0.94819 1.00127 1.21092 0.95755 0.99145 0.98004 1.21086 0.99569 0.97284 0.95914 0.93524 0.92762 0.93187 0.93208 0.91835 0.86929 0.93519 0.92284 0.90172 0.90677 0.91554 0.91339 0.93006 0.91746 0.92445 0.85909 0.86295 0.86518 0.86422 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.14 -2.53 6.17 -26.73 -0.16 -2.70 16 3 C 0.10 2.21 4.72 -4.04 -0.02 2.19 16 4 N -0.44 -11.29 2.56 -114.81 -0.29 -11.59 16 5 C -0.31 -8.62 8.98 -14.94 -0.13 -8.75 16 6 H 0.09 2.66 7.70 -52.49 -0.40 2.25 16 7 C 0.04 0.94 4.92 -17.47 -0.09 0.85 16 8 N -0.87 -23.48 11.33 55.50 0.63 -22.85 16 9 Si 0.92 20.76 29.61 -169.99 -5.03 15.73 16 10 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 13 C 0.46 11.23 7.59 -10.98 -0.08 11.14 16 14 O -0.59 -16.56 15.81 5.55 0.09 -16.47 16 15 C -0.13 -2.45 4.06 -27.88 -0.11 -2.56 16 16 C -0.09 -1.47 3.72 -26.73 -0.10 -1.57 16 17 C -0.06 -0.73 2.56 -91.77 -0.24 -0.96 16 18 H 0.08 0.92 7.88 -51.93 -0.41 0.51 16 19 C -0.14 -1.72 8.76 37.16 0.33 -1.40 16 20 C -0.07 -0.85 4.78 -104.62 -0.50 -1.35 16 21 C -0.11 -1.43 8.76 -39.58 -0.35 -1.77 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 23 C -0.13 -1.40 10.05 -39.59 -0.40 -1.80 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.12 -1.42 9.67 -39.58 -0.38 -1.80 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.85 6.60 -51.93 -0.34 0.51 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.11 2.70 5.34 -51.93 -0.28 2.43 16 32 H 0.05 0.92 6.66 -51.93 -0.35 0.58 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.08 1.37 5.83 -51.93 -0.30 1.07 16 35 H 0.07 1.24 6.54 -51.93 -0.34 0.90 16 36 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 37 H 0.07 1.23 7.54 -51.93 -0.39 0.84 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.76 6.56 -51.93 -0.34 0.42 16 40 H 0.06 0.69 7.37 -51.93 -0.38 0.31 16 41 H 0.12 1.54 7.16 -52.48 -0.38 1.16 16 42 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.12 1.20 7.95 -52.48 -0.42 0.79 16 LS Contribution 359.79 15.07 5.42 5.42 Total: -1.00 -31.24 359.79 -9.12 -40.36 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.27 Total: 5.08 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.66 Total: -15.69 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.34 Total: -34.43 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.24 -9.12 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137852447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.019 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds