Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47161 * 2 1 4 4 N 1.46506 * 109.46945 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00481 * 264.75146 * 4 3 2 6 6 H 1.08002 * 119.99816 * 146.16471 * 5 4 3 7 7 C 1.38946 * 119.99861 * 326.16225 * 5 4 3 8 8 N 1.31412 * 120.00145 * 337.68720 * 7 5 4 9 9 Si 1.86806 * 119.99828 * 157.68455 * 7 5 4 10 10 H 1.48495 * 109.46847 * 60.00414 * 9 7 5 11 11 H 1.48504 * 109.46726 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.46937 * 300.00118 * 9 7 5 13 13 C 1.34786 * 119.99490 * 84.74943 * 4 3 2 14 14 O 1.21293 * 119.99936 * 180.02562 * 13 4 3 15 15 C 1.50705 * 119.99889 * 0.02562 * 13 4 3 16 16 C 1.53004 * 109.46742 * 179.97438 * 15 13 4 17 17 C 1.53003 * 109.46735 * 180.02562 * 16 15 13 18 18 H 1.08993 * 109.46955 * 304.99829 * 17 16 15 19 19 C 1.52997 * 109.47272 * 64.99670 * 17 16 15 20 20 C 1.50699 * 109.46555 * 184.99808 * 17 16 15 21 21 C 1.38232 * 120.00365 * 299.72090 * 20 17 16 22 22 C 1.38237 * 120.00013 * 179.80952 * 21 20 17 23 23 C 1.38233 * 119.99928 * 0.40373 * 22 21 20 24 24 C 1.38232 * 120.00055 * 359.85352 * 23 22 21 25 25 C 1.38234 * 120.00102 * 359.95619 * 24 23 22 26 26 H 1.08995 * 109.47745 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47026 * 300.00002 * 1 2 3 28 28 H 1.09007 * 109.47163 * 59.99793 * 1 2 3 29 29 H 1.09000 * 109.47026 * 239.99998 * 2 1 3 30 30 H 1.08998 * 109.46602 * 120.00392 * 2 1 3 31 31 H 1.09000 * 109.47152 * 60.00075 * 3 2 1 32 32 H 1.08998 * 109.47682 * 299.99730 * 3 2 1 33 33 H 0.97001 * 119.99971 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47023 * 59.99732 * 15 13 4 35 35 H 1.08993 * 109.46955 * 300.00096 * 15 13 4 36 36 H 1.08998 * 109.47017 * 60.00032 * 16 15 13 37 37 H 1.09000 * 109.46687 * 299.99672 * 16 15 13 38 38 H 1.08999 * 109.47065 * 179.97438 * 19 17 16 39 39 H 1.08999 * 109.47223 * 300.00021 * 19 17 16 40 40 H 1.09002 * 109.46973 * 59.99951 * 19 17 16 41 41 H 1.08003 * 119.99550 * 0.02562 * 21 20 17 42 42 H 1.08003 * 119.99960 * 180.23334 * 22 21 20 43 43 H 1.08000 * 119.99894 * 179.82930 * 23 22 21 44 44 H 1.08001 * 120.00280 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.00185 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1901 1.5511 1.1831 6 1 5.1329 1.0397 1.3100 7 6 3.6716 2.3193 2.2183 8 7 2.8004 3.2686 1.9595 9 14 4.2127 2.0027 3.9780 10 1 5.6807 2.1978 4.0871 11 1 3.5181 2.9492 4.8873 12 1 3.8689 0.6090 4.3584 13 6 4.1794 1.3354 -1.1615 14 8 5.3923 1.3348 -1.1611 15 6 3.4262 1.2164 -2.4615 16 6 4.4209 1.1102 -3.6192 17 6 3.6563 0.9900 -4.9390 18 1 2.9639 0.1502 -4.8825 19 6 2.8739 2.2798 -5.1944 20 6 4.6313 0.7625 -6.0653 21 6 5.6077 1.7031 -6.3350 22 6 6.5046 1.4925 -7.3656 23 6 6.4197 0.3451 -8.1320 24 6 5.4400 -0.5930 -7.8657 25 6 4.5457 -0.3842 -6.8326 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 2.4381 3.8046 2.6822 34 1 2.8000 2.0976 -2.6005 35 1 2.7992 0.3252 -2.4378 36 1 5.0475 0.2292 -3.4803 37 1 5.0476 2.0018 -3.6426 38 1 2.3296 2.1943 -6.1349 39 1 2.1687 2.4443 -4.3797 40 1 3.5664 3.1197 -5.2509 41 1 5.6721 2.6010 -5.7381 42 1 7.2698 2.2256 -7.5739 43 1 7.1187 0.1819 -8.9389 44 1 5.3734 -1.4892 -8.4647 45 1 3.7804 -1.1174 -6.6243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137852447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = -49.677451 kcal Electronic energy + Delta-G solvation = -22968.590388 eV Core-core repulsion = 19756.424825 eV Total energy + Delta-G solvation = -3212.165564 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73239 -40.14891 -37.30945 -36.61633 -34.54610 -32.99486 -32.12149 -31.73089 -29.75315 -27.77425 -26.68676 -25.52366 -23.79278 -23.14358 -22.40835 -20.87025 -20.29904 -18.79459 -17.94782 -17.54393 -16.90004 -16.46324 -16.16506 -15.89362 -15.73893 -15.35553 -14.85195 -14.81772 -14.46642 -14.19054 -14.08694 -13.92881 -13.57526 -13.39058 -13.11888 -13.09818 -12.94453 -12.78052 -12.53787 -12.45020 -12.20641 -12.14573 -11.98059 -11.96203 -11.80186 -11.50838 -11.48049 -11.31976 -10.85342 -10.30622 -9.76845 -9.53701 -9.43343 -8.33590 -6.02682 0.51041 0.55097 1.37468 1.39888 1.49998 2.08161 2.29814 2.91608 3.01478 3.13833 3.75585 3.85112 3.99882 4.18071 4.18937 4.20760 4.29072 4.35402 4.36705 4.46234 4.53919 4.59372 4.64272 4.70625 4.72435 4.77177 4.84295 5.02725 5.05533 5.07892 5.11464 5.18838 5.22208 5.25101 5.32490 5.41280 5.42149 5.43360 5.49796 5.63847 5.64614 5.67025 5.82663 6.18503 6.21863 6.56492 7.20631 7.52055 8.11948 8.68027 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.003531 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.022722 B = 7928.367892 C = 8577.993893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.102 3.898 4 N -0.456 5.456 5 C -0.346 4.346 6 H 0.060 0.940 7 C 0.005 3.995 8 N -0.886 5.886 9 Si 0.977 3.023 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.265 1.265 13 C 0.438 3.562 14 O -0.636 6.636 15 C -0.118 4.118 16 C -0.079 4.079 17 C -0.045 4.045 18 H 0.093 0.907 19 C -0.143 4.143 20 C -0.084 4.084 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.129 4.129 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.040 0.960 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.274 0.726 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.048 0.952 41 H 0.113 0.887 42 H 0.133 0.867 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -5.635 -16.413 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.021 4.021 4 N -0.174 5.174 5 C -0.474 4.474 6 H 0.077 0.923 7 C -0.197 4.197 8 N -0.524 5.524 9 Si 0.800 3.200 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.190 1.190 13 C 0.229 3.771 14 O -0.524 6.524 15 C -0.158 4.158 16 C -0.117 4.117 17 C -0.063 4.063 18 H 0.112 0.888 19 C -0.200 4.200 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.147 4.147 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.160 0.840 44 H 0.162 0.838 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.577 -5.469 -16.281 17.774 hybrid contribution 0.709 0.248 1.251 1.459 sum -3.868 -5.222 -15.030 16.374 Atomic orbital electron populations 1.21626 0.93199 1.02381 1.02228 1.21878 0.97466 0.96638 1.01095 1.21756 0.79880 0.96765 1.03686 1.43835 1.06140 1.62745 1.04641 1.19349 1.06899 1.29844 0.91309 0.92257 1.26003 0.97198 0.92950 1.03596 1.69978 1.31287 1.16919 1.34187 0.85258 0.78302 0.78754 0.77637 1.20427 1.19382 1.19014 1.21475 0.88005 0.80877 0.86783 1.90462 1.16685 1.57258 1.87976 1.21617 0.98876 1.04383 0.90892 1.21201 0.96797 1.01158 0.92524 1.20159 0.95315 1.00197 0.90617 0.88837 1.21882 0.99901 0.95886 1.02332 1.20030 0.96717 0.94986 0.96695 1.21187 0.95983 0.99618 0.98303 1.21405 0.99105 0.98602 0.95739 1.21449 0.99207 0.94210 1.00337 1.21462 0.95106 0.99969 0.97754 1.21354 1.00300 0.97041 0.95997 0.91208 0.93326 0.91277 0.92061 0.94072 0.89319 0.91646 0.91656 0.88552 0.88108 0.93715 0.93644 0.91306 0.91523 0.93267 0.86870 0.84873 0.84026 0.83821 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.13 -4.61 6.17 30.59 0.19 -4.42 16 3 C 0.10 4.39 4.72 86.38 0.41 4.80 16 4 N -0.46 -23.82 2.56 -635.52 -1.63 -25.45 16 5 C -0.35 -20.19 8.98 84.04 0.75 -19.43 16 6 H 0.06 3.74 7.70 -2.91 -0.02 3.71 16 7 C 0.01 0.27 4.92 84.93 0.42 0.69 16 8 N -0.89 -48.07 11.33 21.66 0.25 -47.82 16 9 Si 0.98 43.03 29.61 68.60 2.03 45.06 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 13 C 0.44 22.25 7.59 87.66 0.67 22.91 16 14 O -0.64 -38.02 15.81 -3.07 -0.05 -38.06 16 15 C -0.12 -4.26 4.06 29.85 0.12 -4.14 16 16 C -0.08 -2.66 3.72 30.60 0.11 -2.54 16 17 C -0.04 -1.11 2.56 -11.54 -0.03 -1.14 16 18 H 0.09 2.00 7.88 -2.39 -0.02 1.98 16 19 C -0.14 -3.19 8.76 71.98 0.63 -2.56 16 20 C -0.08 -2.11 4.78 -19.87 -0.09 -2.20 16 21 C -0.13 -3.42 8.76 22.27 0.20 -3.23 16 22 C -0.13 -2.89 10.05 22.27 0.22 -2.67 16 23 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 24 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 25 C -0.13 -2.78 9.67 22.27 0.22 -2.56 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.31 16 28 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.06 1.98 6.60 -2.39 -0.02 1.96 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 4.28 5.34 -2.39 -0.01 4.26 16 32 H 0.07 2.50 6.66 -2.39 -0.02 2.49 16 33 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 34 H 0.10 3.18 5.83 -2.39 -0.01 3.16 16 35 H 0.10 3.12 6.54 -2.39 -0.02 3.10 16 36 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 37 H 0.04 1.71 7.54 -2.39 -0.02 1.70 16 38 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.07 1.44 6.56 -2.39 -0.02 1.42 16 40 H 0.05 1.17 7.37 -2.39 -0.02 1.15 16 41 H 0.11 3.00 7.16 -2.91 -0.02 2.98 16 42 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.14 2.38 7.95 -2.91 -0.02 2.35 16 Total: -1.00 -70.97 359.79 6.53 -64.44 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.95 Total: 25.70 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 4.97 Total: -23.88 kcal Atomic # 7 Polarization: -71.89 SS G_CDS: -1.38 Total: -73.27 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.05 Total: -38.06 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -70.97 6.53 -64.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137852447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.764 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds