Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46499 * 109.47117 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99653 * 269.99594 * 4 3 2 6 6 H 1.07999 * 119.99763 * 145.32748 * 5 4 3 7 7 C 1.38951 * 120.00152 * 325.32759 * 5 4 3 8 8 N 1.31413 * 120.00040 * 337.24423 * 7 5 4 9 9 Si 1.86802 * 119.99902 * 157.24520 * 7 5 4 10 10 H 1.48501 * 109.47030 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47341 * 119.99965 * 9 7 5 12 12 H 1.48500 * 109.46996 * 240.00208 * 9 7 5 13 13 C 1.34780 * 120.00036 * 90.00173 * 4 3 2 14 14 O 1.21294 * 119.99953 * 4.88212 * 13 4 3 15 15 C 1.50697 * 119.99889 * 184.88193 * 13 4 3 16 16 C 1.52995 * 109.47332 * 177.73605 * 15 13 4 17 17 C 1.52997 * 109.47211 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47489 * 54.99701 * 17 16 15 19 19 C 1.53002 * 109.47153 * 294.99681 * 17 16 15 20 20 C 1.50707 * 109.46854 * 174.99828 * 17 16 15 21 21 C 1.38233 * 120.00102 * 59.72665 * 20 17 16 22 22 C 1.38236 * 119.99767 * 179.78477 * 21 20 17 23 23 C 1.38234 * 120.00137 * 0.44437 * 22 21 20 24 24 C 1.38240 * 119.99763 * 359.80711 * 23 22 21 25 25 C 1.38230 * 120.00022 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47489 * 300.00037 * 1 2 3 28 28 H 1.09004 * 109.47168 * 60.00427 * 1 2 3 29 29 H 1.09002 * 109.47489 * 239.99963 * 2 1 3 30 30 H 1.09004 * 109.47168 * 119.99573 * 2 1 3 31 31 H 1.09002 * 109.46909 * 59.99608 * 3 2 1 32 32 H 1.09004 * 109.46691 * 299.99866 * 3 2 1 33 33 H 0.96995 * 119.99706 * 184.96096 * 8 7 5 34 34 H 1.09004 * 109.46990 * 57.72938 * 15 13 4 35 35 H 1.09004 * 109.47024 * 297.73681 * 15 13 4 36 36 H 1.08999 * 109.47253 * 59.99446 * 16 15 13 37 37 H 1.09007 * 109.46618 * 300.00039 * 16 15 13 38 38 H 1.09004 * 109.46946 * 60.00071 * 19 17 16 39 39 H 1.08996 * 109.47416 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.46939 * 300.00356 * 19 17 16 41 41 H 1.08003 * 119.99573 * 359.97438 * 21 20 17 42 42 H 1.07996 * 119.99646 * 180.27166 * 22 21 20 43 43 H 1.07999 * 119.99816 * 179.83469 * 23 22 21 44 44 H 1.08002 * 119.99710 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00004 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4424 1.1864 6 1 5.1271 0.9103 1.2691 7 6 3.6816 2.1269 2.2832 8 7 2.8293 3.1112 2.1056 9 14 4.2087 1.6479 4.0101 10 1 5.1694 0.5177 3.9389 11 1 4.8590 2.8089 4.6692 12 1 3.0171 1.2366 4.7951 13 6 4.1784 1.4427 -1.1681 14 8 3.5748 1.5323 -2.2164 15 6 5.6813 1.3316 -1.1711 16 6 6.1874 1.2988 -2.6145 17 6 7.7132 1.1854 -2.6175 18 1 8.0141 0.3169 -2.0316 19 6 8.3197 2.4492 -2.0046 20 6 8.2025 1.0295 -4.0344 21 6 7.9340 2.0108 -4.9703 22 6 8.3867 1.8699 -6.2688 23 6 9.0999 0.7434 -6.6337 24 6 9.3638 -0.2404 -5.6991 25 6 8.9151 -0.0973 -4.3995 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 2.5292 3.6356 2.8643 34 1 5.9789 0.4156 -0.6607 35 1 6.1101 2.1907 -0.6551 36 1 5.8897 2.2148 -3.1249 37 1 5.7585 0.4397 -3.1305 38 1 7.9658 2.5619 -0.9798 39 1 9.4067 2.3686 -2.0071 40 1 8.0188 3.3177 -2.5905 41 1 7.3733 2.8890 -4.6861 42 1 8.1807 2.6386 -6.9988 43 1 9.4512 0.6321 -7.6489 44 1 9.9207 -1.1207 -5.9843 45 1 9.1216 -0.8658 -3.6692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137852522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -37.837911 kcal Electronic energy + Delta-G solvation = -22870.321528 eV Core-core repulsion = 19658.669365 eV Total energy + Delta-G solvation = -3211.652162 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.49890 -38.53361 -35.82762 -34.86580 -32.79532 -31.34754 -30.87995 -30.65986 -28.59501 -26.05542 -25.05983 -24.00660 -22.71921 -22.03681 -20.59252 -19.52537 -18.95545 -17.07466 -16.48436 -15.87130 -15.33487 -15.05060 -14.67210 -14.40048 -14.30921 -13.91303 -13.62547 -13.36660 -13.21472 -13.18728 -12.72427 -12.49016 -12.07896 -12.02247 -11.64308 -11.45557 -11.36427 -11.26548 -11.14900 -10.96620 -10.93777 -10.64537 -10.50454 -10.39965 -10.28534 -10.20424 -9.99840 -9.69957 -9.10790 -8.86552 -8.61004 -8.32055 -7.45485 -6.36503 -4.01803 1.43197 1.45622 3.08787 3.20729 3.23869 3.84899 3.95295 4.12271 4.68827 4.88337 4.90324 5.00933 5.03456 5.15596 5.30621 5.46662 5.54353 5.61470 5.62755 5.80741 5.84727 5.88954 5.98317 6.04014 6.04766 6.12155 6.16931 6.24516 6.34869 6.37981 6.46458 6.53018 6.54291 6.56274 6.62886 6.72527 6.73912 6.84297 6.87657 6.90319 7.07407 7.17216 7.38528 7.55542 7.98748 8.40573 9.09771 9.58031 10.01550 10.65114 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.003713 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.730131 B = 7539.131626 C = 8415.524963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.441 5.441 5 C -0.340 4.340 6 H 0.090 0.910 7 C 0.044 3.956 8 N -0.859 5.859 9 Si 0.911 3.089 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.280 1.280 13 C 0.468 3.532 14 O -0.609 6.609 15 C -0.119 4.119 16 C -0.090 4.090 17 C -0.056 4.056 18 H 0.076 0.924 19 C -0.145 4.145 20 C -0.064 4.064 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.121 4.121 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.269 0.731 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.123 0.877 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 -3.888 -7.899 12.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.159 5.159 5 C -0.467 4.467 6 H 0.108 0.892 7 C -0.162 4.162 8 N -0.496 5.496 9 Si 0.738 3.262 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.205 1.205 13 C 0.257 3.743 14 O -0.496 6.496 15 C -0.159 4.159 16 C -0.128 4.128 17 C -0.075 4.075 18 H 0.095 0.905 19 C -0.202 4.202 20 C -0.064 4.064 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.151 4.151 24 C -0.140 4.140 25 C -0.139 4.139 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.967 -3.737 -8.255 12.748 hybrid contribution 0.233 -0.201 1.018 1.063 sum 9.200 -3.938 -7.237 12.350 Atomic orbital electron populations 1.21658 0.96655 1.00377 1.01393 1.21819 0.94631 0.99554 1.01099 1.21468 0.81779 0.94526 1.03658 1.43490 1.04680 1.63145 1.04607 1.19446 1.07549 1.32407 0.87335 0.89222 1.25322 0.96629 0.94124 1.00122 1.69870 1.32097 1.15864 1.31757 0.86128 0.78668 0.78864 0.82568 1.19172 1.20756 1.20526 1.20472 0.89460 0.80384 0.83973 1.90509 1.70624 1.56265 1.32171 1.21406 0.94477 1.03301 0.96732 1.21355 0.91665 1.02945 0.96823 1.20274 0.96359 0.99311 0.91526 0.90549 1.21895 0.99910 0.96861 1.01544 1.20000 0.96479 0.94026 0.95925 1.21084 0.99593 0.99271 0.93025 1.21134 0.98456 0.97911 0.96329 1.21078 1.00027 0.94705 0.99246 1.21091 1.00409 0.98938 0.93585 1.21095 0.98840 0.97588 0.96361 0.93681 0.92978 0.93169 0.93261 0.92340 0.87546 0.92872 0.92038 0.90671 0.89456 0.91512 0.91917 0.91401 0.93131 0.92564 0.85916 0.86347 0.86561 0.86455 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.15 0.37 -2.11 16 2 C -0.13 -2.77 6.26 -26.73 -0.17 -2.94 16 3 C 0.11 2.67 5.05 -4.04 -0.02 2.64 16 4 N -0.44 -11.18 2.54 -114.81 -0.29 -11.47 16 5 C -0.34 -8.51 8.73 -14.93 -0.13 -8.64 16 6 H 0.09 2.13 6.95 -52.49 -0.36 1.77 16 7 C 0.04 1.09 4.95 -17.47 -0.09 1.01 16 8 N -0.86 -22.58 11.34 55.50 0.63 -21.95 16 9 Si 0.91 19.17 29.61 -169.99 -5.03 14.14 16 10 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 13 C 0.47 11.46 7.63 -10.99 -0.08 11.38 16 14 O -0.61 -16.32 15.54 5.55 0.09 -16.23 16 15 C -0.12 -2.33 4.08 -27.89 -0.11 -2.45 16 16 C -0.09 -1.55 3.71 -26.74 -0.10 -1.65 16 17 C -0.06 -0.78 2.56 -91.77 -0.24 -1.01 16 18 H 0.08 1.00 7.88 -51.93 -0.41 0.59 16 19 C -0.14 -1.88 8.76 37.16 0.33 -1.55 16 20 C -0.06 -0.86 4.78 -104.62 -0.50 -1.36 16 21 C -0.11 -1.47 8.76 -39.58 -0.35 -1.81 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.13 -1.45 10.05 -39.58 -0.40 -1.84 16 24 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 25 C -0.12 -1.48 9.67 -39.59 -0.38 -1.86 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.11 2.74 5.36 -51.93 -0.28 2.47 16 32 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 33 H 0.27 6.65 8.32 -40.82 -0.34 6.31 16 34 H 0.07 1.39 7.68 -51.93 -0.40 0.99 16 35 H 0.09 1.69 6.52 -51.93 -0.34 1.35 16 36 H 0.07 1.22 7.49 -51.93 -0.39 0.83 16 37 H 0.06 1.16 8.12 -51.93 -0.42 0.73 16 38 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.72 7.41 -51.93 -0.38 0.34 16 41 H 0.12 1.57 7.17 -52.48 -0.38 1.20 16 42 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.27 7.95 -52.48 -0.42 0.86 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -29.07 363.13 -9.24 -38.31 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.44 Total: 7.46 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.67 Total: -15.74 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.34 Total: -33.41 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.07 -9.24 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137852522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.474 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds