Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 N 1.46499 * 109.47117 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99653 * 269.99594 * 4 3 2 6 6 H 1.07999 * 119.99763 * 145.32748 * 5 4 3 7 7 C 1.38951 * 120.00152 * 325.32759 * 5 4 3 8 8 N 1.31413 * 120.00040 * 337.24423 * 7 5 4 9 9 Si 1.86802 * 119.99902 * 157.24520 * 7 5 4 10 10 H 1.48501 * 109.47030 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47341 * 119.99965 * 9 7 5 12 12 H 1.48500 * 109.46996 * 240.00208 * 9 7 5 13 13 C 1.34780 * 120.00036 * 90.00173 * 4 3 2 14 14 O 1.21294 * 119.99953 * 4.88212 * 13 4 3 15 15 C 1.50697 * 119.99889 * 184.88193 * 13 4 3 16 16 C 1.52995 * 109.47332 * 177.73605 * 15 13 4 17 17 C 1.52997 * 109.47211 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.47489 * 54.99701 * 17 16 15 19 19 C 1.53002 * 109.47153 * 294.99681 * 17 16 15 20 20 C 1.50707 * 109.46854 * 174.99828 * 17 16 15 21 21 C 1.38233 * 120.00102 * 59.72665 * 20 17 16 22 22 C 1.38236 * 119.99767 * 179.78477 * 21 20 17 23 23 C 1.38234 * 120.00137 * 0.44437 * 22 21 20 24 24 C 1.38240 * 119.99763 * 359.80711 * 23 22 21 25 25 C 1.38230 * 120.00022 * 359.97438 * 24 23 22 26 26 H 1.09004 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47489 * 300.00037 * 1 2 3 28 28 H 1.09004 * 109.47168 * 60.00427 * 1 2 3 29 29 H 1.09002 * 109.47489 * 239.99963 * 2 1 3 30 30 H 1.09004 * 109.47168 * 119.99573 * 2 1 3 31 31 H 1.09002 * 109.46909 * 59.99608 * 3 2 1 32 32 H 1.09004 * 109.46691 * 299.99866 * 3 2 1 33 33 H 0.96995 * 119.99706 * 184.96096 * 8 7 5 34 34 H 1.09004 * 109.46990 * 57.72938 * 15 13 4 35 35 H 1.09004 * 109.47024 * 297.73681 * 15 13 4 36 36 H 1.08999 * 109.47253 * 59.99446 * 16 15 13 37 37 H 1.09007 * 109.46618 * 300.00039 * 16 15 13 38 38 H 1.09004 * 109.46946 * 60.00071 * 19 17 16 39 39 H 1.08996 * 109.47416 * 180.02562 * 19 17 16 40 40 H 1.09000 * 109.46939 * 300.00356 * 19 17 16 41 41 H 1.08003 * 119.99573 * 359.97438 * 21 20 17 42 42 H 1.07996 * 119.99646 * 180.27166 * 22 21 20 43 43 H 1.07999 * 119.99816 * 179.83469 * 23 22 21 44 44 H 1.08002 * 119.99710 * 179.97438 * 24 23 22 45 45 H 1.08004 * 120.00004 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.4424 1.1864 6 1 5.1271 0.9103 1.2691 7 6 3.6816 2.1269 2.2832 8 7 2.8293 3.1112 2.1056 9 14 4.2087 1.6479 4.0101 10 1 5.1694 0.5177 3.9389 11 1 4.8590 2.8089 4.6692 12 1 3.0171 1.2366 4.7951 13 6 4.1784 1.4427 -1.1681 14 8 3.5748 1.5323 -2.2164 15 6 5.6813 1.3316 -1.1711 16 6 6.1874 1.2988 -2.6145 17 6 7.7132 1.1854 -2.6175 18 1 8.0141 0.3169 -2.0316 19 6 8.3197 2.4492 -2.0046 20 6 8.2025 1.0295 -4.0344 21 6 7.9340 2.0108 -4.9703 22 6 8.3867 1.8699 -6.2688 23 6 9.0999 0.7434 -6.6337 24 6 9.3638 -0.2404 -5.6991 25 6 8.9151 -0.0973 -4.3995 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 2.5292 3.6356 2.8643 34 1 5.9789 0.4156 -0.6607 35 1 6.1101 2.1907 -0.6551 36 1 5.8897 2.2148 -3.1249 37 1 5.7585 0.4397 -3.1305 38 1 7.9658 2.5619 -0.9798 39 1 9.4067 2.3686 -2.0071 40 1 8.0188 3.3177 -2.5905 41 1 7.3733 2.8890 -4.6861 42 1 8.1807 2.6386 -6.9988 43 1 9.4512 0.6321 -7.6489 44 1 9.9207 -1.1207 -5.9843 45 1 9.1216 -0.8658 -3.6692 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137852522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = -50.381108 kcal Electronic energy + Delta-G solvation = -22870.865442 eV Core-core repulsion = 19658.669365 eV Total energy + Delta-G solvation = -3212.196076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.71840 -40.16395 -37.30967 -36.50903 -34.53827 -33.22984 -32.02423 -31.72291 -29.72800 -27.74162 -26.79344 -25.44442 -23.76529 -23.14625 -22.22939 -20.96108 -20.59339 -18.68132 -17.85287 -17.52081 -16.78591 -16.28795 -16.27521 -15.94821 -15.75822 -15.45860 -14.88577 -14.78259 -14.43162 -14.20501 -14.08024 -13.96956 -13.55898 -13.22417 -13.19722 -13.08514 -12.96390 -12.66691 -12.54366 -12.38779 -12.36687 -12.10869 -11.98859 -11.94242 -11.75659 -11.54365 -11.45778 -11.32547 -11.01197 -10.30499 -9.76555 -9.53246 -9.43093 -8.28089 -6.00520 0.51499 0.55422 1.41530 1.49963 1.61910 2.05758 2.33620 2.90330 3.00788 3.12739 3.77770 3.87885 4.11073 4.18487 4.20432 4.22706 4.31663 4.31966 4.41355 4.49613 4.55922 4.61125 4.63223 4.70090 4.75351 4.81346 4.93501 4.95187 5.06860 5.07538 5.09315 5.15243 5.20547 5.22433 5.25533 5.36674 5.42666 5.44479 5.48258 5.60354 5.65088 5.67250 5.83515 6.06274 6.18854 6.45839 7.14984 7.63306 8.07610 8.74919 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.003713 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.730131 B = 7539.131626 C = 8415.524963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C 0.109 3.891 4 N -0.453 5.453 5 C -0.356 4.356 6 H 0.102 0.898 7 C 0.003 3.997 8 N -0.894 5.894 9 Si 0.982 3.018 10 H -0.255 1.255 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.449 3.551 14 O -0.642 6.642 15 C -0.108 4.108 16 C -0.077 4.077 17 C -0.046 4.046 18 H 0.088 0.912 19 C -0.142 4.142 20 C -0.083 4.083 21 C -0.132 4.132 22 C -0.129 4.129 23 C -0.134 4.134 24 C -0.125 4.125 25 C -0.130 4.130 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.272 0.728 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.068 -5.395 -7.534 14.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C -0.015 4.015 4 N -0.170 5.170 5 C -0.483 4.483 6 H 0.120 0.880 7 C -0.200 4.200 8 N -0.532 5.532 9 Si 0.805 3.195 10 H -0.178 1.178 11 H -0.205 1.205 12 H -0.206 1.206 13 C 0.240 3.760 14 O -0.531 6.531 15 C -0.147 4.147 16 C -0.115 4.115 17 C -0.065 4.065 18 H 0.107 0.893 19 C -0.199 4.199 20 C -0.083 4.083 21 C -0.150 4.150 22 C -0.147 4.147 23 C -0.151 4.151 24 C -0.143 4.143 25 C -0.148 4.148 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.132 0.868 42 H 0.153 0.847 43 H 0.161 0.839 44 H 0.162 0.838 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.604 -5.250 -7.889 14.221 hybrid contribution -0.301 0.310 0.824 0.931 sum 10.303 -4.939 -7.064 13.434 Atomic orbital electron populations 1.21615 0.93713 1.02385 1.01664 1.21704 0.97189 0.96789 1.00409 1.21448 0.81966 0.96471 1.01642 1.43799 1.05112 1.62920 1.05204 1.19817 1.08232 1.32840 0.87389 0.88007 1.26185 0.96492 0.93539 1.03738 1.69980 1.33312 1.16873 1.32997 0.85053 0.78339 0.78751 0.77319 1.17812 1.20523 1.20575 1.21363 0.91521 0.79759 0.83349 1.90472 1.71779 1.57672 1.33159 1.21370 0.90879 1.03992 0.98491 1.21211 0.94318 1.01224 0.94743 1.20154 0.93459 1.00197 0.92644 0.89335 1.21866 1.00899 0.96288 1.00868 1.20002 0.97776 0.94974 0.95500 1.21182 1.00414 0.99353 0.94062 1.21407 0.98354 0.98901 0.96042 1.21454 0.99079 0.94037 1.00575 1.21455 0.99946 0.99799 0.93050 1.21340 0.98660 0.97377 0.97452 0.90766 0.92617 0.93027 0.94297 0.92451 0.88932 0.95249 0.91811 0.89170 0.89171 0.93367 0.93553 0.91992 0.91443 0.93066 0.86799 0.84709 0.83916 0.83831 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.91 71.98 0.71 -3.87 16 2 C -0.12 -5.15 6.26 30.59 0.19 -4.96 16 3 C 0.11 5.46 5.05 86.38 0.44 5.89 16 4 N -0.45 -23.46 2.54 -635.52 -1.61 -25.07 16 5 C -0.36 -17.80 8.73 84.04 0.73 -17.07 16 6 H 0.10 4.74 6.95 -2.91 -0.02 4.72 16 7 C 0.00 0.16 4.95 84.93 0.42 0.58 16 8 N -0.89 -47.53 11.34 21.66 0.25 -47.29 16 9 Si 0.98 38.61 29.61 68.60 2.03 40.64 16 10 H -0.25 -9.42 7.11 99.48 0.71 -8.72 16 11 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 12 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 13 C 0.45 22.68 7.63 87.66 0.67 23.35 16 14 O -0.64 -35.86 15.54 -3.07 -0.05 -35.91 16 15 C -0.11 -4.26 4.08 29.85 0.12 -4.14 16 16 C -0.08 -2.70 3.71 30.59 0.11 -2.59 16 17 C -0.05 -1.25 2.56 -11.54 -0.03 -1.28 16 18 H 0.09 2.18 7.88 -2.39 -0.02 2.16 16 19 C -0.14 -3.59 8.76 71.98 0.63 -2.96 16 20 C -0.08 -2.16 4.78 -19.86 -0.09 -2.25 16 21 C -0.13 -3.47 8.76 22.27 0.20 -3.27 16 22 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 23 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 24 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 25 C -0.13 -2.96 9.67 22.27 0.22 -2.74 16 26 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.09 4.92 5.36 -2.39 -0.01 4.91 16 32 H 0.03 1.57 7.36 -2.38 -0.02 1.55 16 33 H 0.27 13.56 8.32 -92.71 -0.77 12.79 16 34 H 0.09 3.27 7.68 -2.39 -0.02 3.25 16 35 H 0.09 3.51 6.52 -2.38 -0.02 3.50 16 36 H 0.05 1.85 7.49 -2.39 -0.02 1.83 16 37 H 0.05 1.76 8.12 -2.38 -0.02 1.74 16 38 H 0.06 1.62 6.57 -2.38 -0.02 1.60 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.32 7.41 -2.39 -0.02 1.31 16 41 H 0.11 3.07 7.17 -2.91 -0.02 3.05 16 42 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 44 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.13 2.55 7.95 -2.91 -0.02 2.53 16 Total: -1.00 -63.58 363.13 6.55 -57.04 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.95 Total: 33.15 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: 4.99 Total: -22.56 kcal Atomic # 7 Polarization: -70.99 SS G_CDS: -1.37 Total: -72.36 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.05 Total: -35.91 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -63.58 6.55 -57.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137852522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.655 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds