Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47461 * 2 1 4 4 H 1.09004 * 109.46574 * 54.76174 * 3 2 1 5 5 C 1.52992 * 109.47530 * 174.76625 * 3 2 1 6 6 C 1.50701 * 109.46834 * 293.98505 * 5 3 2 7 7 O 1.21277 * 120.00439 * 354.08639 * 6 5 3 8 8 N 1.34780 * 120.00027 * 174.08736 * 6 5 3 9 9 C 1.46505 * 119.99906 * 359.97438 * 8 6 5 10 10 C 1.46501 * 120.00296 * 179.97438 * 8 6 5 11 11 C 1.50702 * 109.46713 * 90.00330 * 10 8 6 12 12 H 1.08000 * 120.00368 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00093 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99825 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46966 * 90.00168 * 15 13 11 17 17 H 1.48508 * 109.47023 * 209.99862 * 15 13 11 18 18 H 1.48498 * 109.47066 * 329.99864 * 15 13 11 19 19 C 1.50702 * 109.47283 * 294.77088 * 3 2 1 20 20 C 1.38244 * 119.99450 * 299.72167 * 19 3 2 21 21 C 1.38238 * 119.99522 * 179.76508 * 20 19 3 22 22 C 1.38238 * 119.99983 * 0.51226 * 21 20 19 23 23 C 1.50697 * 119.99855 * 179.72557 * 22 21 20 24 24 C 1.38233 * 120.00187 * 359.74153 * 22 21 20 25 25 C 1.38229 * 120.00320 * 119.99424 * 19 3 2 26 26 H 1.08996 * 109.47159 * 175.25305 * 1 2 3 27 27 H 1.09000 * 109.46623 * 295.24879 * 1 2 3 28 28 H 1.08995 * 109.47369 * 55.24225 * 1 2 3 29 29 H 1.08994 * 109.47530 * 120.00687 * 2 1 3 30 30 H 1.08996 * 109.46527 * 240.00220 * 2 1 3 31 31 H 1.09002 * 109.47060 * 53.97921 * 5 3 2 32 32 H 1.08992 * 109.47523 * 173.98069 * 5 3 2 33 33 H 1.08999 * 109.47148 * 89.99614 * 9 8 6 34 34 H 1.09000 * 109.46994 * 209.99864 * 9 8 6 35 35 H 1.09000 * 109.47009 * 329.99894 * 9 8 6 36 36 H 1.08999 * 109.47424 * 209.99886 * 10 8 6 37 37 H 1.09001 * 109.47251 * 330.00475 * 10 8 6 38 38 H 0.97005 * 119.99841 * 180.02562 * 14 13 11 39 39 H 1.07993 * 120.00014 * 0.02562 * 20 19 3 40 40 H 1.08001 * 119.99749 * 180.23189 * 21 20 19 41 41 H 1.09003 * 109.46522 * 270.02141 * 23 22 21 42 42 H 1.08996 * 109.47179 * 30.01524 * 23 22 21 43 43 H 1.08998 * 109.47614 * 150.02195 * 23 22 21 44 44 H 1.08001 * 120.00178 * 179.97438 * 24 22 21 45 45 H 1.08003 * 119.99998 * 0.02562 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6022 1.9826 0.8394 5 6 3.5644 1.4445 0.1316 6 6 3.9524 0.9073 1.4851 7 8 3.0961 0.6582 2.3069 8 7 5.2511 0.7037 1.7823 9 6 6.2856 1.0041 0.7893 10 6 5.6284 0.1821 3.0983 11 6 5.6641 -1.3237 3.0502 12 1 5.4288 -1.8405 2.1316 13 6 5.9960 -2.0418 4.1794 14 7 6.2811 -1.4127 5.2986 15 14 6.0395 -3.9084 4.1201 16 1 7.4009 -4.3598 3.7351 17 1 5.6970 -4.4543 5.4581 18 1 5.0554 -4.3949 3.1202 19 6 1.6463 2.1146 -1.2901 20 6 2.0911 1.6080 -2.4970 21 6 1.7260 2.2217 -3.6807 22 6 0.9248 3.3480 -3.6569 23 6 0.5318 4.0205 -4.9469 24 6 0.4844 3.8575 -2.4497 25 6 0.8451 3.2407 -1.2663 26 1 -0.3633 -1.0241 -0.0850 27 1 -0.3632 0.4384 0.9295 28 1 -0.3634 0.5858 -0.8442 29 1 1.8934 -0.5139 0.8898 30 1 1.8932 -0.5138 -0.8900 31 1 3.9971 0.8156 -0.6465 32 1 3.9370 2.4631 0.0244 33 1 6.6100 2.0384 0.9040 34 1 7.1357 0.3382 0.9375 35 1 5.8808 0.8593 -0.2123 36 1 6.6139 0.5603 3.3702 37 1 4.8979 0.5048 3.8401 38 1 6.5150 -1.9179 6.0930 39 1 2.7203 0.7306 -2.5154 40 1 2.0703 1.8238 -4.6238 41 1 1.2741 4.7765 -5.2032 42 1 0.4800 3.2777 -5.7428 43 1 -0.4427 4.4940 -4.8278 44 1 -0.1412 4.7377 -2.4311 45 1 0.5016 3.6392 -0.3231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157040565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = -35.708398 kcal Electronic energy + Delta-G solvation = -22978.997726 eV Core-core repulsion = 19767.437906 eV Total energy + Delta-G solvation = -3211.559820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98102 -38.82152 -35.92868 -34.64260 -32.61220 -32.02913 -30.97010 -30.33162 -27.96143 -26.83631 -25.66724 -24.11221 -22.92167 -22.39097 -21.69633 -19.81370 -18.22329 -16.83888 -16.49074 -15.63649 -15.56299 -15.13849 -14.98261 -14.75100 -14.34062 -14.18212 -13.84330 -13.45322 -13.41089 -13.21224 -12.74568 -12.50018 -12.32189 -12.15812 -11.98968 -11.97955 -11.79900 -11.57091 -11.23398 -11.19706 -11.06525 -10.84087 -10.73667 -10.52071 -10.36061 -10.34186 -10.12363 -9.60016 -8.95193 -8.81603 -8.46181 -8.42084 -7.59515 -6.02881 -4.07550 1.30503 1.37401 3.30543 3.37133 3.40795 3.50572 3.69733 4.03308 4.45715 4.70973 4.71076 4.88037 4.95983 5.00917 5.23453 5.26439 5.30015 5.37496 5.38241 5.45600 5.47416 5.56807 5.62591 5.64261 5.74665 5.77359 5.93188 5.96442 5.99110 6.04093 6.13633 6.19119 6.24556 6.32803 6.38189 6.48372 6.52966 6.70059 6.77932 6.99532 7.09200 7.47107 7.57991 7.93857 8.25549 8.46938 8.92532 9.15114 9.57630 11.05174 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.003384 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.702565 B = 8271.809502 C = 8546.088061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.033 4.033 4 H 0.087 0.913 5 C -0.132 4.132 6 C 0.504 3.496 7 O -0.539 6.539 8 N -0.604 5.604 9 C 0.083 3.917 10 C 0.245 3.755 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.067 4.067 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.099 4.099 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 9.943 -18.837 22.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.052 4.052 4 H 0.105 0.895 5 C -0.172 4.172 6 C 0.291 3.709 7 O -0.417 6.417 8 N -0.337 5.337 9 C -0.061 4.061 10 C 0.125 3.875 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.067 4.067 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.099 4.099 23 C -0.169 4.169 24 C -0.138 4.138 25 C -0.131 4.131 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.767 9.775 -18.190 22.434 hybrid contribution 0.275 -1.047 -0.020 1.082 sum -8.492 8.728 -18.210 21.907 Atomic orbital electron populations 1.21715 0.96145 1.01038 1.01407 1.21658 0.95819 0.95176 1.03002 1.19977 0.94063 0.96987 0.94154 0.89480 1.21765 0.96430 1.02343 0.96691 1.20311 0.82865 0.78871 0.88878 1.90645 1.48826 1.52010 1.50261 1.48176 1.05067 1.63253 1.17155 1.21634 0.92772 0.99980 0.91696 1.19272 0.96137 0.93778 0.78271 1.21433 1.46607 0.91472 0.96809 0.92512 1.24940 0.95242 0.98780 0.95195 1.69937 1.46863 1.35676 1.00980 0.86509 0.78191 0.85340 0.77457 1.20674 1.21092 1.19878 1.19947 0.96682 0.95123 0.94973 1.21019 1.00067 0.99944 0.91873 1.20988 0.98742 0.96000 0.98031 1.19864 0.98562 0.96337 0.95164 1.20759 1.01384 1.00263 0.94471 1.20981 1.00776 1.00007 0.92037 1.21096 0.98283 0.95621 0.98114 0.93209 0.92742 0.93256 0.89453 0.92742 0.89618 0.89603 0.93847 0.90882 0.92446 0.95161 0.93849 0.92746 0.86091 0.86407 0.91430 0.91781 0.91804 0.86426 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.80 37.16 0.36 -1.59 16 2 C -0.12 -1.79 5.11 -26.73 -0.14 -1.93 16 3 C -0.03 -0.47 1.68 -91.77 -0.15 -0.62 16 4 H 0.09 1.36 7.56 -51.93 -0.39 0.97 16 5 C -0.13 -1.96 3.61 -27.89 -0.10 -2.06 16 6 C 0.50 10.34 7.23 -10.98 -0.08 10.26 16 7 O -0.54 -13.21 13.88 5.56 0.08 -13.13 16 8 N -0.60 -12.88 2.86 -182.95 -0.52 -13.40 16 9 C 0.08 1.33 10.27 59.85 0.61 1.95 16 10 C 0.24 6.46 5.16 -5.19 -0.03 6.44 16 11 C -0.52 -14.96 9.39 -34.44 -0.32 -15.28 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.07 -0.82 3.70 -104.62 -0.39 -1.21 16 20 C -0.11 -1.25 8.71 -39.58 -0.34 -1.60 16 21 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 22 C -0.10 -0.97 5.88 -104.63 -0.62 -1.59 16 23 C -0.11 -0.80 10.01 36.00 0.36 -0.44 16 24 C -0.12 -1.22 9.70 -39.58 -0.38 -1.61 16 25 C -0.11 -1.29 9.67 -39.58 -0.38 -1.67 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.62 7.24 -51.93 -0.38 0.24 16 29 H 0.09 1.64 6.18 -51.93 -0.32 1.32 16 30 H 0.05 0.75 7.23 -51.93 -0.38 0.37 16 31 H 0.09 1.14 6.53 -51.93 -0.34 0.80 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.12 1.27 7.15 -52.49 -0.38 0.90 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 43 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.28 7.95 -52.48 -0.42 0.86 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -32.62 364.77 -8.80 -41.42 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.49 Total: -0.32 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.08 Total: -10.93 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.21 Total: -39.50 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.62 -8.80 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157040565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.708 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds