Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47461 * 2 1 4 4 H 1.09004 * 109.46574 * 54.76174 * 3 2 1 5 5 C 1.52992 * 109.47530 * 174.76625 * 3 2 1 6 6 C 1.50701 * 109.46834 * 293.98505 * 5 3 2 7 7 O 1.21277 * 120.00439 * 354.08639 * 6 5 3 8 8 N 1.34780 * 120.00027 * 174.08736 * 6 5 3 9 9 C 1.46505 * 119.99906 * 359.97438 * 8 6 5 10 10 C 1.46501 * 120.00296 * 179.97438 * 8 6 5 11 11 C 1.50702 * 109.46713 * 90.00330 * 10 8 6 12 12 H 1.08000 * 120.00368 * 359.97438 * 11 10 8 13 13 C 1.37874 * 120.00093 * 180.02562 * 11 10 8 14 14 N 1.31515 * 119.99825 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00122 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46966 * 90.00168 * 15 13 11 17 17 H 1.48508 * 109.47023 * 209.99862 * 15 13 11 18 18 H 1.48498 * 109.47066 * 329.99864 * 15 13 11 19 19 C 1.50702 * 109.47283 * 294.77088 * 3 2 1 20 20 C 1.38244 * 119.99450 * 299.72167 * 19 3 2 21 21 C 1.38238 * 119.99522 * 179.76508 * 20 19 3 22 22 C 1.38238 * 119.99983 * 0.51226 * 21 20 19 23 23 C 1.50697 * 119.99855 * 179.72557 * 22 21 20 24 24 C 1.38233 * 120.00187 * 359.74153 * 22 21 20 25 25 C 1.38229 * 120.00320 * 119.99424 * 19 3 2 26 26 H 1.08996 * 109.47159 * 175.25305 * 1 2 3 27 27 H 1.09000 * 109.46623 * 295.24879 * 1 2 3 28 28 H 1.08995 * 109.47369 * 55.24225 * 1 2 3 29 29 H 1.08994 * 109.47530 * 120.00687 * 2 1 3 30 30 H 1.08996 * 109.46527 * 240.00220 * 2 1 3 31 31 H 1.09002 * 109.47060 * 53.97921 * 5 3 2 32 32 H 1.08992 * 109.47523 * 173.98069 * 5 3 2 33 33 H 1.08999 * 109.47148 * 89.99614 * 9 8 6 34 34 H 1.09000 * 109.46994 * 209.99864 * 9 8 6 35 35 H 1.09000 * 109.47009 * 329.99894 * 9 8 6 36 36 H 1.08999 * 109.47424 * 209.99886 * 10 8 6 37 37 H 1.09001 * 109.47251 * 330.00475 * 10 8 6 38 38 H 0.97005 * 119.99841 * 180.02562 * 14 13 11 39 39 H 1.07993 * 120.00014 * 0.02562 * 20 19 3 40 40 H 1.08001 * 119.99749 * 180.23189 * 21 20 19 41 41 H 1.09003 * 109.46522 * 270.02141 * 23 22 21 42 42 H 1.08996 * 109.47179 * 30.01524 * 23 22 21 43 43 H 1.08998 * 109.47614 * 150.02195 * 23 22 21 44 44 H 1.08001 * 120.00178 * 179.97438 * 24 22 21 45 45 H 1.08003 * 119.99998 * 0.02562 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6022 1.9826 0.8394 5 6 3.5644 1.4445 0.1316 6 6 3.9524 0.9073 1.4851 7 8 3.0961 0.6582 2.3069 8 7 5.2511 0.7037 1.7823 9 6 6.2856 1.0041 0.7893 10 6 5.6284 0.1821 3.0983 11 6 5.6641 -1.3237 3.0502 12 1 5.4288 -1.8405 2.1316 13 6 5.9960 -2.0418 4.1794 14 7 6.2811 -1.4127 5.2986 15 14 6.0395 -3.9084 4.1201 16 1 7.4009 -4.3598 3.7351 17 1 5.6970 -4.4543 5.4581 18 1 5.0554 -4.3949 3.1202 19 6 1.6463 2.1146 -1.2901 20 6 2.0911 1.6080 -2.4970 21 6 1.7260 2.2217 -3.6807 22 6 0.9248 3.3480 -3.6569 23 6 0.5318 4.0205 -4.9469 24 6 0.4844 3.8575 -2.4497 25 6 0.8451 3.2407 -1.2663 26 1 -0.3633 -1.0241 -0.0850 27 1 -0.3632 0.4384 0.9295 28 1 -0.3634 0.5858 -0.8442 29 1 1.8934 -0.5139 0.8898 30 1 1.8932 -0.5138 -0.8900 31 1 3.9971 0.8156 -0.6465 32 1 3.9370 2.4631 0.0244 33 1 6.6100 2.0384 0.9040 34 1 7.1357 0.3382 0.9375 35 1 5.8808 0.8593 -0.2123 36 1 6.6139 0.5603 3.3702 37 1 4.8979 0.5048 3.8401 38 1 6.5150 -1.9179 6.0930 39 1 2.7203 0.7306 -2.5154 40 1 2.0703 1.8238 -4.6238 41 1 1.2741 4.7765 -5.2032 42 1 0.4800 3.2777 -5.7428 43 1 -0.4427 4.4940 -4.8278 44 1 -0.1412 4.7377 -2.4311 45 1 0.5016 3.6392 -0.3231 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157040565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = -53.131608 kcal Electronic energy + Delta-G solvation = -22979.753253 eV Core-core repulsion = 19767.437906 eV Total energy + Delta-G solvation = -3212.315347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13910 -40.12147 -37.14013 -36.30527 -34.73046 -32.86537 -31.80697 -31.61421 -29.70289 -27.85740 -27.18234 -25.54029 -24.11268 -23.73435 -22.64432 -20.88067 -19.76506 -18.69437 -18.11754 -17.12780 -16.71234 -16.52730 -16.19289 -16.04508 -15.76360 -15.25252 -14.81042 -14.64481 -14.39511 -14.20137 -14.16002 -14.01812 -13.56685 -13.43862 -13.30105 -13.11742 -13.00319 -12.84821 -12.75354 -12.67741 -12.53008 -12.23586 -12.11656 -11.93256 -11.76420 -11.71354 -11.49645 -11.40718 -10.64751 -10.48334 -9.74093 -9.38341 -9.29387 -8.22680 -6.37697 0.49253 0.58335 1.35362 1.38575 1.48901 1.89275 2.33040 2.48488 2.91470 3.06546 3.63482 3.75213 4.04277 4.11423 4.12068 4.19974 4.24186 4.32865 4.37811 4.52892 4.56641 4.60458 4.69113 4.73415 4.79465 4.89088 4.90094 4.93319 4.97502 5.02350 5.04780 5.06854 5.19627 5.23864 5.27295 5.34532 5.38972 5.44339 5.57014 5.63345 5.78677 5.84964 5.86108 6.06441 6.20991 6.70197 6.82614 7.28703 7.53387 8.84320 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.003384 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.702565 B = 8271.809502 C = 8546.088061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C -0.025 4.025 4 H 0.064 0.936 5 C -0.116 4.116 6 C 0.494 3.506 7 O -0.590 6.590 8 N -0.614 5.614 9 C 0.078 3.922 10 C 0.259 3.741 11 C -0.540 4.540 12 H 0.053 0.947 13 C 0.006 3.994 14 N -0.930 5.930 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.272 1.272 19 C -0.078 4.078 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.100 4.100 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.125 4.125 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.021 0.979 37 H -0.004 1.004 38 H 0.267 0.733 39 H 0.128 0.872 40 H 0.139 0.861 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.135 0.865 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.378 10.031 -22.269 25.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.044 4.044 4 H 0.082 0.918 5 C -0.155 4.155 6 C 0.284 3.716 7 O -0.471 6.471 8 N -0.345 5.345 9 C -0.064 4.064 10 C 0.137 3.863 11 C -0.579 4.579 12 H 0.071 0.929 13 C -0.193 4.193 14 N -0.570 5.570 15 Si 0.792 3.208 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.078 4.078 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.100 4.100 23 C -0.168 4.168 24 C -0.143 4.143 25 C -0.143 4.143 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.039 0.961 37 H 0.015 0.985 38 H 0.076 0.924 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.153 0.847 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.733 9.886 -21.666 25.365 hybrid contribution 0.243 -0.994 1.024 1.448 sum -8.490 8.892 -20.641 24.025 Atomic orbital electron populations 1.21650 0.95063 1.01591 1.01347 1.21591 0.96861 0.95603 1.01432 1.19813 0.93404 0.96332 0.94873 0.91780 1.21742 0.97126 1.03581 0.93090 1.21355 0.81905 0.77837 0.90540 1.90619 1.50184 1.53996 1.52340 1.48221 1.06840 1.63094 1.16376 1.21926 0.91328 1.01242 0.91912 1.18729 0.94035 0.93154 0.80351 1.21697 1.46692 0.92598 0.96886 0.92874 1.25881 0.94622 1.04076 0.94706 1.70059 1.47486 1.37746 1.01695 0.85412 0.78949 0.78936 0.77500 1.18731 1.20665 1.19705 1.19685 0.98237 0.95838 0.94043 1.21137 1.00234 1.00269 0.91796 1.21267 0.98456 0.95953 0.98463 1.20242 0.97615 0.96069 0.96102 1.20813 1.02069 1.00630 0.93296 1.21225 1.00855 1.00503 0.91747 1.21203 0.98501 0.95724 0.98832 0.92556 0.93892 0.91914 0.93843 0.91215 0.87115 0.87232 0.91346 0.91642 0.88772 0.96114 0.98540 0.92424 0.85362 0.84339 0.90501 0.90760 0.90949 0.84681 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.80 71.98 0.71 -3.04 16 2 C -0.12 -3.56 5.11 30.60 0.16 -3.41 16 3 C -0.03 -0.71 1.68 -11.54 -0.02 -0.73 16 4 H 0.06 2.09 7.56 -2.39 -0.02 2.07 16 5 C -0.12 -3.30 3.61 29.85 0.11 -3.20 16 6 C 0.49 20.74 7.23 87.66 0.63 21.37 16 7 O -0.59 -30.65 13.88 -3.02 -0.04 -30.70 16 8 N -0.61 -26.56 2.86 -851.11 -2.43 -28.99 16 9 C 0.08 2.36 10.27 127.77 1.31 3.68 16 10 C 0.26 14.32 5.16 85.63 0.44 14.76 16 11 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 12 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 13 C 0.01 0.34 5.46 84.65 0.46 0.81 16 14 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 15 Si 0.97 45.52 29.54 68.60 2.03 47.54 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 C -0.08 -1.78 3.70 -19.86 -0.07 -1.85 16 20 C -0.12 -2.31 8.71 22.27 0.19 -2.11 16 21 C -0.12 -2.10 9.70 22.27 0.22 -1.89 16 22 C -0.10 -1.65 5.88 -19.87 -0.12 -1.77 16 23 C -0.11 -1.19 10.01 71.23 0.71 -0.48 16 24 C -0.13 -2.25 9.70 22.27 0.22 -2.04 16 25 C -0.12 -2.67 9.67 22.27 0.22 -2.46 16 26 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.51 7.24 -2.39 -0.02 1.49 16 29 H 0.04 1.71 6.18 -2.39 -0.01 1.69 16 30 H 0.07 1.85 7.23 -2.39 -0.02 1.83 16 31 H 0.11 2.62 6.53 -2.39 -0.02 2.61 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 35 H 0.09 2.15 6.28 -2.39 -0.01 2.13 16 36 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 37 H 0.00 -0.23 7.42 -2.39 -0.02 -0.24 16 38 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 39 H 0.13 2.29 7.15 -2.91 -0.02 2.27 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 43 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 44 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 45 H 0.12 2.49 7.95 -2.91 -0.02 2.47 16 Total: -1.00 -74.42 364.77 6.19 -68.24 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.95 Total: 14.67 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 5.40 Total: -13.80 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -2.15 Total: -85.96 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.04 Total: -30.70 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -74.42 6.19 -68.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157040565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.104 kcal (2) G-P(sol) polarization free energy of solvation -74.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds