Wall clock time and date at job start Tue Mar 31 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 6 6 C 1.50700 * 109.47318 * 64.99944 * 5 3 2 7 7 O 1.21283 * 119.99679 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99937 * 180.02562 * 6 5 3 9 9 C 1.46503 * 119.99957 * 359.97438 * 8 6 5 10 10 C 1.46496 * 119.99911 * 180.02562 * 8 6 5 11 11 C 1.50704 * 109.47496 * 89.99521 * 10 8 6 12 12 H 1.07993 * 119.99596 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99982 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99543 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47278 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47186 * 120.00089 * 15 13 11 18 18 H 1.48506 * 109.46641 * 239.99424 * 15 13 11 19 19 C 1.50697 * 109.47204 * 65.00067 * 3 2 1 20 20 C 1.38230 * 120.00236 * 59.72651 * 19 3 2 21 21 C 1.38234 * 119.99878 * 179.78673 * 20 19 3 22 22 C 1.38227 * 120.00169 * 0.44097 * 21 20 19 23 23 C 1.50701 * 120.00144 * 179.83510 * 22 21 20 24 24 C 1.38238 * 120.00072 * 359.81287 * 22 21 20 25 25 C 1.38236 * 119.99502 * 239.99702 * 19 3 2 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09004 * 109.46733 * 184.99994 * 5 3 2 32 32 H 1.09000 * 109.46628 * 304.99786 * 5 3 2 33 33 H 1.09002 * 109.46981 * 90.00699 * 9 8 6 34 34 H 1.09001 * 109.46853 * 210.00254 * 9 8 6 35 35 H 1.08999 * 109.47293 * 330.00368 * 9 8 6 36 36 H 1.08998 * 109.47280 * 209.99699 * 10 8 6 37 37 H 1.09000 * 109.47408 * 329.99622 * 10 8 6 38 38 H 0.97005 * 119.99663 * 180.02562 * 14 13 11 39 39 H 1.08005 * 119.99973 * 359.97438 * 20 19 3 40 40 H 1.08005 * 119.99920 * 180.27546 * 21 20 19 41 41 H 1.08997 * 109.46961 * 269.97539 * 23 22 21 42 42 H 1.09002 * 109.47390 * 29.97905 * 23 22 21 43 43 H 1.09005 * 109.47121 * 149.97784 * 23 22 21 44 44 H 1.07998 * 120.00150 * 180.02562 * 24 22 21 45 45 H 1.07998 * 120.00811 * 359.97438 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1043 0.5156 -2.2459 8 7 5.2611 0.7856 -1.8013 9 6 6.2934 1.2278 -0.8605 10 6 5.6441 0.2396 -3.1056 11 6 5.7284 1.3572 -4.1131 12 1 5.5181 2.3727 -3.8117 13 6 6.0740 1.0832 -5.4194 14 7 6.3306 -0.1534 -5.7862 15 14 6.1792 2.4688 -6.6679 16 1 5.8467 3.7565 -6.0074 17 1 7.5567 2.5355 -7.2185 18 1 5.2171 2.2155 -7.7705 19 6 1.6413 2.1163 1.2877 20 6 2.0720 1.6049 2.4975 21 6 1.7100 2.2255 3.6784 22 6 0.9097 3.3522 3.6500 23 6 0.5119 4.0266 4.9376 24 6 0.4745 3.8606 2.4403 25 6 0.8402 3.2425 1.2592 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9355 2.4655 -0.0367 32 1 3.9953 0.8311 0.6659 33 1 6.5837 0.3939 -0.2213 34 1 7.1630 1.5806 -1.4148 35 1 5.9014 2.0378 -0.2454 36 1 6.6147 -0.2498 -3.0239 37 1 4.8977 -0.4858 -3.4294 38 1 6.5741 -0.3461 -6.7052 39 1 2.6940 0.7222 2.5200 40 1 2.0502 1.8286 4.6235 41 1 -0.4216 3.5961 5.2999 42 1 1.2938 3.8780 5.6823 43 1 0.3756 5.0938 4.7618 44 1 -0.1504 4.7411 2.4181 45 1 0.5004 3.6398 0.3142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157040719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:51 Heat of formation + Delta-G solvation = -35.320700 kcal Electronic energy + Delta-G solvation = -22934.531307 eV Core-core repulsion = 19722.988299 eV Total energy + Delta-G solvation = -3211.543008 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98523 -38.82807 -35.93847 -34.63825 -32.61402 -32.02802 -30.96736 -30.34552 -27.96350 -26.83407 -25.67054 -24.12815 -22.92367 -22.36853 -21.71237 -19.82620 -18.24054 -16.81451 -16.51404 -15.65014 -15.55949 -15.16846 -14.96240 -14.74026 -14.30725 -14.25024 -13.80521 -13.51590 -13.43409 -13.10145 -12.77496 -12.51280 -12.32798 -12.15502 -12.00117 -11.98593 -11.80394 -11.62323 -11.23141 -11.19001 -11.03716 -10.85253 -10.73450 -10.51802 -10.39388 -10.37019 -10.13836 -9.57306 -8.94948 -8.79486 -8.46057 -8.42436 -7.59172 -6.03171 -4.07711 1.30735 1.37653 3.30260 3.37526 3.41127 3.49886 3.69912 4.03238 4.45755 4.70717 4.71377 4.88316 4.95762 5.00348 5.23086 5.26592 5.29745 5.36479 5.38713 5.44113 5.47217 5.61805 5.63092 5.65628 5.66136 5.76578 5.93989 5.95232 5.98587 6.04411 6.12239 6.18716 6.24901 6.30305 6.38098 6.46793 6.53143 6.68872 6.77077 6.99684 7.08959 7.46903 7.58062 7.93757 8.25447 8.46718 8.92695 9.14937 9.57560 11.04900 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003349 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.624512 B = 8358.147546 C = 8481.276704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.033 4.033 4 H 0.086 0.914 5 C -0.132 4.132 6 C 0.504 3.496 7 O -0.539 6.539 8 N -0.604 5.604 9 C 0.084 3.916 10 C 0.244 3.756 11 C -0.524 4.524 12 H 0.057 0.943 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.067 4.067 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.099 4.099 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.044 0.956 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 5.348 20.615 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.052 4.052 4 H 0.104 0.896 5 C -0.172 4.172 6 C 0.291 3.709 7 O -0.417 6.417 8 N -0.336 5.336 9 C -0.061 4.061 10 C 0.125 3.875 11 C -0.563 4.563 12 H 0.075 0.925 13 C -0.142 4.142 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.067 4.067 20 C -0.129 4.129 21 C -0.138 4.138 22 C -0.099 4.099 23 C -0.169 4.169 24 C -0.138 4.138 25 C -0.131 4.131 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.953 5.035 20.033 22.513 hybrid contribution 0.285 0.813 -0.726 1.126 sum -8.668 5.847 19.307 21.956 Atomic orbital electron populations 1.21711 0.96204 1.01018 1.01353 1.21707 0.95779 0.95260 1.03011 1.19979 0.94042 0.96967 0.94197 0.89566 1.21756 0.96387 1.02401 0.96642 1.20317 0.82870 0.79536 0.88205 1.90632 1.49057 1.49502 1.52486 1.48174 1.04839 1.61877 1.18741 1.21629 0.92902 0.98436 0.93100 1.19276 0.96131 0.94713 0.77369 1.21479 1.46532 0.94164 0.94131 0.92470 1.24942 0.95267 0.95726 0.98244 1.69947 1.47125 1.18254 1.18127 0.86451 0.77528 0.82205 0.81292 1.19814 1.20979 1.20872 1.19946 0.96732 0.95109 0.94957 1.20998 1.00194 0.99877 0.91866 1.20977 0.98896 0.95902 0.98021 1.19862 0.98523 0.96391 0.95145 1.20761 1.01499 1.00089 0.94529 1.20989 1.00601 1.00151 0.92035 1.21108 0.98174 0.95609 0.98166 0.92735 0.93245 0.93349 0.89136 0.92872 0.89529 0.89707 0.93838 0.90879 0.92451 0.95140 0.93827 0.92800 0.86129 0.86424 0.91478 0.91762 0.91775 0.86415 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.73 37.16 0.36 -1.52 16 2 C -0.12 -1.72 5.08 -26.73 -0.14 -1.86 16 3 C -0.03 -0.47 1.69 -91.77 -0.15 -0.62 16 4 H 0.09 1.37 7.69 -51.93 -0.40 0.97 16 5 C -0.13 -1.96 3.47 -27.88 -0.10 -2.05 16 6 C 0.50 10.31 7.35 -10.99 -0.08 10.23 16 7 O -0.54 -13.11 13.57 5.55 0.08 -13.04 16 8 N -0.60 -12.87 2.86 -182.95 -0.52 -13.39 16 9 C 0.08 1.34 10.24 59.85 0.61 1.95 16 10 C 0.24 6.45 5.16 -5.19 -0.03 6.42 16 11 C -0.52 -15.01 9.39 -34.44 -0.32 -15.34 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 14 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 15 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 19 C -0.07 -0.83 3.76 -104.63 -0.39 -1.22 16 20 C -0.11 -1.24 8.71 -39.59 -0.34 -1.58 16 21 C -0.12 -1.21 9.70 -39.59 -0.38 -1.59 16 22 C -0.10 -0.98 5.88 -104.63 -0.62 -1.59 16 23 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 24 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 25 C -0.11 -1.31 9.67 -39.58 -0.38 -1.70 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 29 H 0.09 1.59 5.88 -51.93 -0.31 1.29 16 30 H 0.05 0.68 7.21 -51.93 -0.37 0.31 16 31 H 0.09 1.20 7.40 -51.93 -0.38 0.82 16 32 H 0.08 1.08 7.55 -51.93 -0.39 0.69 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 35 H 0.06 0.76 6.44 -51.93 -0.33 0.42 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.12 1.22 7.13 -52.48 -0.37 0.85 16 40 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 43 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 44 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.33 7.95 -52.49 -0.42 0.91 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -32.65 364.74 -8.83 -41.48 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.51 Total: -0.55 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.08 Total: -10.92 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.21 Total: -39.49 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.08 Total: -13.04 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.65 -8.83 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157040719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.155 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds