Wall clock time and date at job start Tue Mar 31 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.09002 * 109.47069 * 304.99600 * 3 2 1 5 5 C 1.53006 * 109.46846 * 185.00166 * 3 2 1 6 6 C 1.50700 * 109.47318 * 64.99944 * 5 3 2 7 7 O 1.21283 * 119.99679 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99937 * 180.02562 * 6 5 3 9 9 C 1.46503 * 119.99957 * 359.97438 * 8 6 5 10 10 C 1.46496 * 119.99911 * 180.02562 * 8 6 5 11 11 C 1.50704 * 109.47496 * 89.99521 * 10 8 6 12 12 H 1.07993 * 119.99596 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99982 * 180.02562 * 11 10 8 14 14 N 1.31514 * 120.00008 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99543 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47278 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47186 * 120.00089 * 15 13 11 18 18 H 1.48506 * 109.46641 * 239.99424 * 15 13 11 19 19 C 1.50697 * 109.47204 * 65.00067 * 3 2 1 20 20 C 1.38230 * 120.00236 * 59.72651 * 19 3 2 21 21 C 1.38234 * 119.99878 * 179.78673 * 20 19 3 22 22 C 1.38227 * 120.00169 * 0.44097 * 21 20 19 23 23 C 1.50701 * 120.00144 * 179.83510 * 22 21 20 24 24 C 1.38238 * 120.00072 * 359.81287 * 22 21 20 25 25 C 1.38236 * 119.99502 * 239.99702 * 19 3 2 26 26 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 27 27 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09004 * 109.46733 * 184.99994 * 5 3 2 32 32 H 1.09000 * 109.46628 * 304.99786 * 5 3 2 33 33 H 1.09002 * 109.46981 * 90.00699 * 9 8 6 34 34 H 1.09001 * 109.46853 * 210.00254 * 9 8 6 35 35 H 1.08999 * 109.47293 * 330.00368 * 9 8 6 36 36 H 1.08998 * 109.47280 * 209.99699 * 10 8 6 37 37 H 1.09000 * 109.47408 * 329.99622 * 10 8 6 38 38 H 0.97005 * 119.99663 * 180.02562 * 14 13 11 39 39 H 1.08005 * 119.99973 * 359.97438 * 20 19 3 40 40 H 1.08005 * 119.99920 * 180.27546 * 21 20 19 41 41 H 1.08997 * 109.46961 * 269.97539 * 23 22 21 42 42 H 1.09002 * 109.47390 * 29.97905 * 23 22 21 43 43 H 1.09005 * 109.47121 * 149.97784 * 23 22 21 44 44 H 1.07998 * 120.00150 * 180.02562 * 24 22 21 45 45 H 1.07998 * 120.00811 * 359.97438 * 25 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 6 3.9589 0.8821 -1.4673 7 8 3.1043 0.5156 -2.2459 8 7 5.2611 0.7856 -1.8013 9 6 6.2934 1.2278 -0.8605 10 6 5.6441 0.2396 -3.1056 11 6 5.7284 1.3572 -4.1131 12 1 5.5181 2.3727 -3.8117 13 6 6.0740 1.0832 -5.4194 14 7 6.3306 -0.1534 -5.7862 15 14 6.1792 2.4688 -6.6679 16 1 5.8467 3.7565 -6.0074 17 1 7.5567 2.5355 -7.2185 18 1 5.2171 2.2155 -7.7705 19 6 1.6413 2.1163 1.2877 20 6 2.0720 1.6049 2.4975 21 6 1.7100 2.2255 3.6784 22 6 0.9097 3.3522 3.6500 23 6 0.5119 4.0266 4.9376 24 6 0.4745 3.8606 2.4403 25 6 0.8402 3.2425 1.2592 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3635 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9355 2.4655 -0.0367 32 1 3.9953 0.8311 0.6659 33 1 6.5837 0.3939 -0.2213 34 1 7.1630 1.5806 -1.4148 35 1 5.9014 2.0378 -0.2454 36 1 6.6147 -0.2498 -3.0239 37 1 4.8977 -0.4858 -3.4294 38 1 6.5741 -0.3461 -6.7052 39 1 2.6940 0.7222 2.5200 40 1 2.0502 1.8286 4.6235 41 1 -0.4216 3.5961 5.2999 42 1 1.2938 3.8780 5.6823 43 1 0.3756 5.0938 4.7618 44 1 -0.1504 4.7411 2.4181 45 1 0.5004 3.6398 0.3142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157040719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:50 Heat of formation + Delta-G solvation = -52.707573 kcal Electronic energy + Delta-G solvation = -22935.285258 eV Core-core repulsion = 19722.988299 eV Total energy + Delta-G solvation = -3212.296959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14229 -40.12111 -37.14921 -36.28194 -34.73565 -32.85613 -31.80104 -31.61824 -29.70361 -27.85453 -27.18295 -25.55112 -24.07975 -23.73709 -22.64675 -20.87739 -19.78507 -18.69787 -18.09864 -17.13055 -16.74431 -16.45247 -16.33522 -15.95105 -15.75139 -15.26696 -14.81957 -14.63041 -14.39324 -14.19529 -14.16279 -13.90401 -13.66178 -13.44980 -13.31174 -13.12359 -12.97039 -12.82978 -12.76064 -12.66641 -12.56295 -12.24408 -12.12100 -11.93118 -11.73948 -11.69669 -11.49236 -11.41470 -10.66002 -10.44123 -9.74367 -9.37379 -9.29342 -8.23330 -6.38321 0.49225 0.58109 1.34819 1.37277 1.49205 1.89179 2.32799 2.48392 2.91517 3.05834 3.64222 3.75096 4.04692 4.10950 4.13280 4.20604 4.24001 4.34993 4.41559 4.51676 4.54697 4.60561 4.69458 4.73464 4.81306 4.89184 4.89557 4.93878 4.97195 5.03247 5.04339 5.08767 5.20461 5.23539 5.27312 5.34978 5.40172 5.46502 5.57133 5.63920 5.78437 5.84905 5.86309 6.06175 6.20909 6.69906 6.82875 7.28238 7.53700 8.83725 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003349 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.624512 B = 8358.147546 C = 8481.276704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C -0.026 4.026 4 H 0.058 0.942 5 C -0.115 4.115 6 C 0.494 3.506 7 O -0.588 6.588 8 N -0.614 5.614 9 C 0.078 3.922 10 C 0.259 3.741 11 C -0.541 4.541 12 H 0.052 0.948 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.968 3.032 16 H -0.267 1.267 17 H -0.268 1.268 18 H -0.281 1.281 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.112 4.112 24 C -0.126 4.126 25 C -0.126 4.126 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.022 0.978 37 H -0.002 1.002 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 7.071 23.338 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.045 4.045 4 H 0.077 0.923 5 C -0.155 4.155 6 C 0.283 3.717 7 O -0.469 6.469 8 N -0.345 5.345 9 C -0.064 4.064 10 C 0.137 3.863 11 C -0.580 4.580 12 H 0.070 0.930 13 C -0.193 4.193 14 N -0.569 5.569 15 Si 0.792 3.208 16 H -0.192 1.192 17 H -0.193 1.193 18 H -0.207 1.207 19 C -0.078 4.078 20 C -0.133 4.133 21 C -0.141 4.141 22 C -0.101 4.101 23 C -0.168 4.168 24 C -0.144 4.144 25 C -0.145 4.145 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.040 0.960 37 H 0.016 0.984 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.152 0.848 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.803 6.773 22.800 25.362 hybrid contribution 0.214 0.250 -1.511 1.547 sum -8.589 7.023 21.289 24.006 Atomic orbital electron populations 1.21648 0.95293 1.01507 1.01216 1.21633 0.96648 0.95350 1.01895 1.19820 0.93370 0.96642 0.94670 0.92344 1.21732 0.97079 1.03257 0.93427 1.21356 0.81926 0.78533 0.89853 1.90611 1.50380 1.51425 1.54534 1.48218 1.06604 1.61873 1.17836 1.21918 0.91352 1.00617 0.92492 1.18730 0.94044 0.93501 0.79994 1.21737 1.46726 0.94300 0.95218 0.93022 1.25873 0.94659 0.98374 1.00350 1.70061 1.47655 1.20320 1.18865 0.85364 0.78148 0.78940 0.78331 1.19164 1.19301 1.20734 1.19700 0.98210 0.95732 0.94184 1.21141 1.00279 1.00250 0.91643 1.21275 0.98489 0.95746 0.98558 1.20241 0.97624 0.96198 0.95994 1.20814 1.02257 1.00353 0.93378 1.21218 1.00747 1.00650 0.91821 1.21198 0.98613 0.95891 0.98753 0.94097 0.92436 0.92162 0.93012 0.90973 0.87807 0.86614 0.91066 0.91745 0.88999 0.96042 0.98407 0.92399 0.85049 0.84179 0.90575 0.90615 0.91022 0.84845 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 9.73 71.98 0.70 -2.92 16 2 C -0.12 -3.41 5.08 30.59 0.16 -3.26 16 3 C -0.03 -0.74 1.69 -11.54 -0.02 -0.75 16 4 H 0.06 1.95 7.69 -2.39 -0.02 1.93 16 5 C -0.12 -3.28 3.47 29.85 0.10 -3.18 16 6 C 0.49 20.65 7.35 87.66 0.64 21.29 16 7 O -0.59 -30.34 13.57 -3.04 -0.04 -30.39 16 8 N -0.61 -26.50 2.86 -851.13 -2.43 -28.94 16 9 C 0.08 2.37 10.24 127.77 1.31 3.68 16 10 C 0.26 14.29 5.16 85.64 0.44 14.73 16 11 C -0.54 -31.88 9.39 25.60 0.24 -31.63 16 12 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 13 C 0.01 0.36 5.46 84.65 0.46 0.83 16 14 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 15 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 16 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 C -0.08 -1.80 3.76 -19.87 -0.07 -1.87 16 20 C -0.12 -2.23 8.71 22.27 0.19 -2.04 16 21 C -0.12 -2.06 9.70 22.27 0.22 -1.84 16 22 C -0.10 -1.67 5.88 -19.87 -0.12 -1.79 16 23 C -0.11 -1.21 10.01 71.24 0.71 -0.50 16 24 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 25 C -0.13 -2.81 9.67 22.27 0.22 -2.60 16 26 H 0.04 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.41 7.38 -2.39 -0.02 1.40 16 29 H 0.05 1.92 5.88 -2.39 -0.01 1.90 16 30 H 0.07 1.77 7.21 -2.39 -0.02 1.75 16 31 H 0.10 2.64 7.40 -2.38 -0.02 2.62 16 32 H 0.12 2.60 7.55 -2.39 -0.02 2.58 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 35 H 0.09 2.14 6.44 -2.39 -0.02 2.13 16 36 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 37 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 38 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 39 H 0.13 2.20 7.13 -2.91 -0.02 2.18 16 40 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 43 H 0.07 0.68 8.09 -2.38 -0.02 0.66 16 44 H 0.13 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.12 2.58 7.95 -2.91 -0.02 2.56 16 Total: -1.00 -74.32 364.74 6.18 -68.14 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.95 Total: 14.32 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 5.40 Total: -14.00 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.15 Total: -85.77 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.04 Total: -30.39 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.32 6.18 -68.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157040719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.427 kcal (2) G-P(sol) polarization free energy of solvation -74.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds