Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 H 1.09005 * 109.47207 * 54.76713 * 3 2 1 5 5 C 1.53001 * 109.47421 * 174.76598 * 3 2 1 6 6 C 1.50696 * 109.47224 * 293.99770 * 5 3 2 7 7 O 1.21281 * 120.00278 * 353.86949 * 6 5 3 8 8 N 1.34782 * 119.99910 * 173.86989 * 6 5 3 9 9 C 1.46503 * 119.99960 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46919 * 325.00192 * 9 8 6 11 11 C 1.53003 * 109.47008 * 84.99772 * 9 8 6 12 12 C 1.50697 * 109.46881 * 205.00192 * 9 8 6 13 13 H 1.07995 * 120.00437 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99664 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99841 * 179.97438 * 14 12 9 16 16 Si 1.86798 * 119.99891 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.47364 * 90.00287 * 16 14 12 18 18 H 1.48501 * 109.47206 * 209.99814 * 16 14 12 19 19 H 1.48496 * 109.47473 * 330.00095 * 16 14 12 20 20 C 1.50698 * 109.47554 * 294.77143 * 3 2 1 21 21 C 1.38241 * 119.99849 * 299.72801 * 20 3 2 22 22 C 1.38233 * 119.99888 * 179.76721 * 21 20 3 23 23 C 1.38232 * 120.00000 * 0.49889 * 22 21 20 24 24 C 1.50704 * 119.99641 * 179.72903 * 23 22 21 25 25 C 1.38231 * 119.99951 * 359.75399 * 23 22 21 26 26 C 1.38229 * 120.00422 * 359.97438 * 25 23 22 27 27 H 1.08995 * 109.47356 * 55.24951 * 1 2 3 28 28 H 1.09003 * 109.46939 * 295.24730 * 1 2 3 29 29 H 1.09004 * 109.47274 * 175.25484 * 1 2 3 30 30 H 1.08996 * 109.47561 * 120.00414 * 2 1 3 31 31 H 1.08998 * 109.47039 * 240.00216 * 2 1 3 32 32 H 1.09003 * 109.46479 * 53.99793 * 5 3 2 33 33 H 1.08999 * 109.47298 * 173.99081 * 5 3 2 34 34 H 0.97003 * 119.99829 * 0.02562 * 8 6 5 35 35 H 1.09005 * 109.46937 * 60.00432 * 11 9 8 36 36 H 1.09000 * 109.46811 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.47257 * 300.00151 * 11 9 8 38 38 H 0.97001 * 119.99717 * 180.02562 * 15 14 12 39 39 H 1.08003 * 119.99514 * 359.97438 * 21 20 3 40 40 H 1.07998 * 119.99459 * 180.22930 * 22 21 20 41 41 H 1.09006 * 109.47127 * 270.01983 * 24 23 22 42 42 H 1.08997 * 109.47307 * 30.02317 * 24 23 22 43 43 H 1.09003 * 109.47066 * 150.02712 * 24 23 22 44 44 H 1.08005 * 119.99996 * 179.97438 * 25 23 22 45 45 H 1.07995 * 120.00374 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6021 1.9827 0.8394 5 6 3.5643 1.4445 0.1316 6 6 3.9524 0.9071 1.4849 7 8 3.0964 0.6615 2.3082 8 7 5.2509 0.6994 1.7804 9 6 5.6283 0.1775 3.0963 10 1 4.9516 0.5752 3.8526 11 6 5.5384 -1.3498 3.0841 12 6 7.0405 0.5952 3.4162 13 1 7.6010 1.1895 2.7099 14 6 7.6173 0.2176 4.6103 15 7 8.8499 0.5817 4.8892 16 14 6.6480 -0.8110 5.8316 17 1 6.8727 -2.2523 5.5532 18 1 7.0994 -0.4973 7.2112 19 1 5.2015 -0.5014 5.7017 20 6 1.6462 2.1146 -1.2900 21 6 2.0908 1.6081 -2.4970 22 6 1.7257 2.2218 -3.6806 23 6 0.9244 3.3480 -3.6567 24 6 0.5314 4.0205 -4.9468 25 6 0.4841 3.8574 -2.4495 26 6 0.8446 3.2405 -1.2662 27 1 -0.3634 0.5857 -0.8443 28 1 -0.3633 0.4383 0.9295 29 1 -0.3634 -1.0242 -0.0850 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9969 0.8159 -0.6468 33 1 3.9368 2.4633 0.0246 34 1 5.9356 0.8963 1.1221 35 1 6.2152 -1.7475 2.3277 36 1 5.8196 -1.7381 4.0630 37 1 4.5170 -1.6518 2.8527 38 1 9.2558 0.3157 5.7291 39 1 2.7207 0.7310 -2.5154 40 1 2.0700 1.8239 -4.6237 41 1 1.2736 4.7766 -5.2032 42 1 0.4796 3.2777 -5.7428 43 1 -0.4432 4.4939 -4.8276 44 1 -0.1416 4.7376 -2.4308 45 1 0.5009 3.6388 -0.3230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157593554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = -38.585917 kcal Electronic energy + Delta-G solvation = -22785.515579 eV Core-core repulsion = 19573.830981 eV Total energy + Delta-G solvation = -3211.684598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.05452 -38.93638 -36.10305 -34.79670 -32.39508 -32.10457 -31.03754 -30.78312 -29.39135 -26.97727 -25.18676 -24.13764 -22.98382 -21.92797 -21.18352 -19.82210 -19.41490 -17.36102 -16.46642 -15.77951 -15.52536 -15.42788 -14.99705 -14.77158 -14.34033 -14.31408 -13.86015 -13.57007 -13.48458 -13.18456 -12.94532 -12.78010 -12.46834 -12.35716 -12.19317 -12.05322 -11.78916 -11.75886 -11.32885 -11.20280 -11.11186 -10.88254 -10.77049 -10.50221 -10.47788 -10.17933 -9.68624 -9.21949 -9.06114 -8.99829 -8.74828 -8.52640 -8.11239 -6.20511 -4.22798 1.24887 1.32426 3.23271 3.29472 3.35655 3.40393 3.64062 4.00917 4.32151 4.64385 4.67464 4.84249 4.88529 4.95054 5.13435 5.15262 5.18379 5.31142 5.35536 5.40167 5.45719 5.55883 5.57792 5.59892 5.65678 5.85089 5.90221 5.97922 6.03823 6.08499 6.18257 6.30871 6.32168 6.36427 6.38840 6.48397 6.52753 6.58005 6.68141 6.87221 6.93872 7.21430 7.32836 7.54397 8.17433 8.56163 8.77234 8.98711 9.40805 10.91783 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.003179 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.777440 B = 8806.538206 C = 9273.224159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.032 4.032 4 H 0.088 0.912 5 C -0.135 4.135 6 C 0.503 3.497 7 O -0.555 6.555 8 N -0.704 5.704 9 C 0.236 3.764 10 H 0.048 0.952 11 C -0.160 4.160 12 C -0.535 4.535 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.886 3.114 17 H -0.277 1.277 18 H -0.295 1.295 19 H -0.262 1.262 20 C -0.070 4.070 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.113 4.113 25 C -0.120 4.120 26 C -0.112 4.112 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.267 0.733 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.782 3.450 -17.766 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.051 4.051 4 H 0.106 0.894 5 C -0.175 4.175 6 C 0.289 3.711 7 O -0.434 6.434 8 N -0.351 5.351 9 C 0.133 3.867 10 H 0.065 0.935 11 C -0.219 4.219 12 C -0.573 4.573 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.203 1.203 18 H -0.222 1.222 19 H -0.187 1.187 20 C -0.070 4.070 21 C -0.129 4.129 22 C -0.138 4.138 23 C -0.098 4.098 24 C -0.169 4.169 25 C -0.138 4.138 26 C -0.130 4.130 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.228 0.772 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.077 0.923 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.217 3.265 -17.022 23.736 hybrid contribution 0.136 -0.466 0.381 0.617 sum -16.080 2.799 -16.641 23.310 Atomic orbital electron populations 1.21721 0.96067 1.01051 1.01561 1.21646 0.95918 0.95274 1.02689 1.19960 0.93903 0.96899 0.94363 0.89389 1.21746 0.96673 1.02967 0.96117 1.20493 0.83246 0.78376 0.89030 1.90630 1.49564 1.52952 1.50264 1.46226 1.06401 1.64469 1.18051 1.19075 0.96816 0.89751 0.81098 0.93451 1.22443 0.99263 0.99485 1.00664 1.21063 0.96292 1.35087 1.04813 0.90246 1.24844 0.94707 0.95474 0.97594 1.69873 1.13107 1.45545 1.24514 0.86864 0.81224 0.80386 0.79926 1.20339 1.22197 1.18651 1.19912 0.96920 0.95278 0.94877 1.21009 1.00031 0.99979 0.91875 1.20991 0.98698 0.96004 0.98067 1.19877 0.98429 0.96265 0.95197 1.20769 1.01435 1.00300 0.94436 1.20989 1.00768 0.99993 0.92030 1.21094 0.98235 0.95569 0.98139 0.93081 0.92747 0.93230 0.89880 0.92633 0.89438 0.89065 0.77221 0.92899 0.93545 0.94563 0.92308 0.86077 0.86361 0.91354 0.91754 0.91777 0.86376 0.86085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.80 37.16 0.36 -1.35 16 2 C -0.12 -1.52 5.11 -26.74 -0.14 -1.66 16 3 C -0.03 -0.41 1.68 -91.78 -0.15 -0.57 16 4 H 0.09 1.25 7.56 -51.93 -0.39 0.86 16 5 C -0.13 -1.80 4.89 -27.88 -0.14 -1.93 16 6 C 0.50 9.16 7.35 -10.99 -0.08 9.08 16 7 O -0.55 -11.91 13.97 5.56 0.08 -11.84 16 8 N -0.70 -13.82 5.07 -54.93 -0.28 -14.10 16 9 C 0.24 5.64 2.15 -69.08 -0.15 5.49 16 10 H 0.05 1.25 6.64 -51.93 -0.34 0.91 16 11 C -0.16 -3.59 8.96 37.16 0.33 -3.26 16 12 C -0.53 -14.52 9.31 -34.44 -0.32 -14.84 16 13 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 14 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 15 N -0.89 -26.60 13.96 55.43 0.77 -25.82 16 16 Si 0.89 21.92 24.37 -169.99 -4.14 17.78 16 17 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 18 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 20 C -0.07 -0.79 3.70 -104.62 -0.39 -1.18 16 21 C -0.11 -1.16 8.71 -39.58 -0.34 -1.51 16 22 C -0.12 -1.15 9.70 -39.59 -0.38 -1.54 16 23 C -0.10 -0.92 5.88 -104.62 -0.62 -1.53 16 24 C -0.11 -0.77 10.01 36.01 0.36 -0.41 16 25 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 26 C -0.11 -1.21 9.67 -39.59 -0.38 -1.60 16 27 H 0.05 0.57 7.24 -51.93 -0.38 0.19 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.30 6.19 -51.93 -0.32 0.98 16 31 H 0.05 0.65 7.24 -51.93 -0.38 0.27 16 32 H 0.09 0.99 7.59 -51.93 -0.39 0.60 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.39 6.84 8.54 -40.82 -0.35 6.49 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 1.14 7.15 -52.48 -0.38 0.77 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 43 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 44 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 45 H 0.12 1.20 7.95 -52.49 -0.42 0.79 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -31.22 356.74 -8.04 -39.26 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.34 Total: 5.61 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.51 Total: -16.27 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.50 Total: -39.92 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.14 Total: 17.78 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.22 -8.04 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157593554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.675 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds