Wall clock time and date at job start Tue Mar 31 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 H 1.09005 * 109.47207 * 54.76713 * 3 2 1 5 5 C 1.53001 * 109.47421 * 174.76598 * 3 2 1 6 6 C 1.50696 * 109.47224 * 293.99770 * 5 3 2 7 7 O 1.21281 * 120.00278 * 353.86949 * 6 5 3 8 8 N 1.34782 * 119.99910 * 173.86989 * 6 5 3 9 9 C 1.46503 * 119.99960 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.46919 * 325.00192 * 9 8 6 11 11 C 1.53003 * 109.47008 * 84.99772 * 9 8 6 12 12 C 1.50697 * 109.46881 * 205.00192 * 9 8 6 13 13 H 1.07995 * 120.00437 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99664 * 180.02562 * 12 9 8 15 15 N 1.31515 * 119.99841 * 179.97438 * 14 12 9 16 16 Si 1.86798 * 119.99891 * 359.97438 * 14 12 9 17 17 H 1.48502 * 109.47364 * 90.00287 * 16 14 12 18 18 H 1.48501 * 109.47206 * 209.99814 * 16 14 12 19 19 H 1.48496 * 109.47473 * 330.00095 * 16 14 12 20 20 C 1.50698 * 109.47554 * 294.77143 * 3 2 1 21 21 C 1.38241 * 119.99849 * 299.72801 * 20 3 2 22 22 C 1.38233 * 119.99888 * 179.76721 * 21 20 3 23 23 C 1.38232 * 120.00000 * 0.49889 * 22 21 20 24 24 C 1.50704 * 119.99641 * 179.72903 * 23 22 21 25 25 C 1.38231 * 119.99951 * 359.75399 * 23 22 21 26 26 C 1.38229 * 120.00422 * 359.97438 * 25 23 22 27 27 H 1.08995 * 109.47356 * 55.24951 * 1 2 3 28 28 H 1.09003 * 109.46939 * 295.24730 * 1 2 3 29 29 H 1.09004 * 109.47274 * 175.25484 * 1 2 3 30 30 H 1.08996 * 109.47561 * 120.00414 * 2 1 3 31 31 H 1.08998 * 109.47039 * 240.00216 * 2 1 3 32 32 H 1.09003 * 109.46479 * 53.99793 * 5 3 2 33 33 H 1.08999 * 109.47298 * 173.99081 * 5 3 2 34 34 H 0.97003 * 119.99829 * 0.02562 * 8 6 5 35 35 H 1.09005 * 109.46937 * 60.00432 * 11 9 8 36 36 H 1.09000 * 109.46811 * 179.97438 * 11 9 8 37 37 H 1.08993 * 109.47257 * 300.00151 * 11 9 8 38 38 H 0.97001 * 119.99717 * 180.02562 * 15 14 12 39 39 H 1.08003 * 119.99514 * 359.97438 * 21 20 3 40 40 H 1.07998 * 119.99459 * 180.22930 * 22 21 20 41 41 H 1.09006 * 109.47127 * 270.01983 * 24 23 22 42 42 H 1.08997 * 109.47307 * 30.02317 * 24 23 22 43 43 H 1.09003 * 109.47066 * 150.02712 * 24 23 22 44 44 H 1.08005 * 119.99996 * 179.97438 * 25 23 22 45 45 H 1.07995 * 120.00374 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6021 1.9827 0.8394 5 6 3.5643 1.4445 0.1316 6 6 3.9524 0.9071 1.4849 7 8 3.0964 0.6615 2.3082 8 7 5.2509 0.6994 1.7804 9 6 5.6283 0.1775 3.0963 10 1 4.9516 0.5752 3.8526 11 6 5.5384 -1.3498 3.0841 12 6 7.0405 0.5952 3.4162 13 1 7.6010 1.1895 2.7099 14 6 7.6173 0.2176 4.6103 15 7 8.8499 0.5817 4.8892 16 14 6.6480 -0.8110 5.8316 17 1 6.8727 -2.2523 5.5532 18 1 7.0994 -0.4973 7.2112 19 1 5.2015 -0.5014 5.7017 20 6 1.6462 2.1146 -1.2900 21 6 2.0908 1.6081 -2.4970 22 6 1.7257 2.2218 -3.6806 23 6 0.9244 3.3480 -3.6567 24 6 0.5314 4.0205 -4.9468 25 6 0.4841 3.8574 -2.4495 26 6 0.8446 3.2405 -1.2662 27 1 -0.3634 0.5857 -0.8443 28 1 -0.3633 0.4383 0.9295 29 1 -0.3634 -1.0242 -0.0850 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9969 0.8159 -0.6468 33 1 3.9368 2.4633 0.0246 34 1 5.9356 0.8963 1.1221 35 1 6.2152 -1.7475 2.3277 36 1 5.8196 -1.7381 4.0630 37 1 4.5170 -1.6518 2.8527 38 1 9.2558 0.3157 5.7291 39 1 2.7207 0.7310 -2.5154 40 1 2.0700 1.8239 -4.6237 41 1 1.2736 4.7766 -5.2032 42 1 0.4796 3.2777 -5.7428 43 1 -0.4432 4.4939 -4.8276 44 1 -0.1416 4.7376 -2.4308 45 1 0.5009 3.6388 -0.3230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157593554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:13 Heat of formation + Delta-G solvation = -56.639445 kcal Electronic energy + Delta-G solvation = -22786.298439 eV Core-core repulsion = 19573.830981 eV Total energy + Delta-G solvation = -3212.467458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13079 -40.15189 -37.31843 -36.37871 -34.38973 -32.86505 -32.32170 -31.74457 -30.75634 -27.80446 -27.21296 -25.20605 -23.74713 -23.10862 -22.50502 -21.24541 -20.59410 -19.05573 -17.91276 -17.45490 -16.77115 -16.37651 -16.17734 -15.88589 -15.76625 -15.26200 -15.00578 -14.92390 -14.42846 -14.33576 -14.21441 -14.15227 -14.03703 -13.59400 -13.39037 -13.11814 -12.95469 -12.79086 -12.77071 -12.68063 -12.18321 -12.13629 -11.93731 -11.78629 -11.63616 -11.49122 -11.41830 -11.27453 -10.87479 -10.59311 -9.81814 -9.74832 -9.30001 -8.38973 -6.44576 0.48625 0.57662 1.26264 1.34556 1.44154 1.82970 2.25365 2.51001 2.91413 2.97414 3.70862 3.77361 4.06226 4.12601 4.14337 4.22833 4.24894 4.36461 4.46391 4.52272 4.54493 4.58055 4.61120 4.70548 4.72304 4.83064 4.88247 4.89384 4.97258 5.02066 5.03081 5.08195 5.19781 5.26852 5.33395 5.34248 5.40268 5.42498 5.46469 5.62169 5.69443 5.78038 5.84263 6.14427 6.20473 6.57623 6.92555 7.19355 7.51177 8.76431 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.029629 B = 0.003179 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.777440 B = 8806.538206 C = 9273.224159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.026 4.026 4 H 0.066 0.934 5 C -0.123 4.123 6 C 0.502 3.498 7 O -0.588 6.588 8 N -0.705 5.705 9 C 0.242 3.758 10 H 0.020 0.980 11 C -0.154 4.154 12 C -0.533 4.533 13 H 0.056 0.944 14 C 0.028 3.972 15 N -0.935 5.935 16 Si 0.940 3.060 17 H -0.259 1.259 18 H -0.293 1.293 19 H -0.263 1.263 20 C -0.080 4.080 21 C -0.116 4.116 22 C -0.125 4.125 23 C -0.101 4.101 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.125 4.125 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.407 0.593 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.046 0.954 38 H 0.270 0.730 39 H 0.132 0.868 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.134 0.866 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 3.092 -19.934 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.044 4.044 4 H 0.084 0.916 5 C -0.163 4.163 6 C 0.290 3.710 7 O -0.469 6.469 8 N -0.354 5.354 9 C 0.137 3.863 10 H 0.038 0.962 11 C -0.212 4.212 12 C -0.571 4.571 13 H 0.074 0.926 14 C -0.172 4.172 15 N -0.574 5.574 16 Si 0.767 3.233 17 H -0.185 1.185 18 H -0.220 1.220 19 H -0.188 1.188 20 C -0.080 4.080 21 C -0.134 4.134 22 C -0.143 4.143 23 C -0.102 4.102 24 C -0.169 4.169 25 C -0.145 4.145 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.123 0.877 34 H 0.242 0.758 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.152 0.848 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.414 2.911 -19.226 26.103 hybrid contribution 0.483 -0.262 0.974 1.118 sum -16.931 2.648 -18.252 25.036 Atomic orbital electron populations 1.21664 0.95298 1.01628 1.01270 1.21596 0.96646 0.95201 1.01860 1.19825 0.93182 0.96752 0.94687 0.91556 1.21746 0.97354 1.03814 0.93347 1.21301 0.82046 0.77215 0.90448 1.90619 1.50322 1.54152 1.51853 1.46097 1.07590 1.64879 1.16841 1.18720 0.94041 0.90917 0.82662 0.96188 1.22330 1.00238 0.97956 1.00678 1.21293 0.97537 1.34076 1.04225 0.92561 1.25570 0.95445 0.96735 0.99420 1.69979 1.14702 1.47286 1.25385 0.85993 0.79665 0.79834 0.77798 1.18499 1.22010 1.18801 1.19735 0.98120 0.95820 0.94307 1.21162 1.00150 1.00372 0.91750 1.21276 0.98462 0.95983 0.98606 1.20241 0.97700 0.96128 0.96080 1.20817 1.02034 1.00626 0.93383 1.21226 1.00937 1.00496 0.91861 1.21217 0.98582 0.95797 0.98752 0.92399 0.93812 0.92350 0.92887 0.91048 0.86698 0.87718 0.75833 0.91661 0.94266 0.93506 0.92059 0.85051 0.84432 0.90649 0.90722 0.90952 0.84836 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.80 71.98 0.71 -2.48 16 2 C -0.12 -2.88 5.11 30.59 0.16 -2.72 16 3 C -0.03 -0.63 1.68 -11.54 -0.02 -0.65 16 4 H 0.07 1.91 7.56 -2.38 -0.02 1.89 16 5 C -0.12 -3.08 4.89 29.85 0.15 -2.94 16 6 C 0.50 18.00 7.35 87.65 0.64 18.64 16 7 O -0.59 -25.46 13.97 -3.03 -0.04 -25.51 16 8 N -0.70 -27.31 5.07 -446.08 -2.26 -29.57 16 9 C 0.24 11.51 2.15 44.24 0.10 11.61 16 10 H 0.02 1.08 6.64 -2.38 -0.02 1.06 16 11 C -0.15 -6.71 8.96 71.98 0.65 -6.06 16 12 C -0.53 -29.25 9.31 25.60 0.24 -29.01 16 13 H 0.06 3.28 7.98 -2.91 -0.02 3.25 16 14 C 0.03 1.59 5.45 84.66 0.46 2.05 16 15 N -0.93 -56.37 13.96 21.45 0.30 -56.07 16 16 Si 0.94 45.16 24.37 68.60 1.67 46.83 16 17 H -0.26 -11.68 6.87 99.48 0.68 -11.00 16 18 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 19 H -0.26 -12.62 6.53 99.48 0.65 -11.97 16 20 C -0.08 -1.68 3.70 -19.86 -0.07 -1.75 16 21 C -0.12 -2.14 8.71 22.27 0.19 -1.95 16 22 C -0.13 -2.06 9.70 22.27 0.22 -1.85 16 23 C -0.10 -1.64 5.88 -19.87 -0.12 -1.76 16 24 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 25 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 26 C -0.13 -2.56 9.67 22.27 0.22 -2.35 16 27 H 0.06 1.22 7.24 -2.39 -0.02 1.20 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.05 1.65 6.19 -2.39 -0.01 1.64 16 31 H 0.07 1.52 7.24 -2.39 -0.02 1.50 16 32 H 0.11 2.29 7.59 -2.39 -0.02 2.27 16 33 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.41 13.73 8.54 -92.71 -0.79 12.94 16 35 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 36 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 38 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.13 2.07 7.15 -2.91 -0.02 2.05 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 43 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 44 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 45 H 0.12 2.36 7.95 -2.91 -0.02 2.34 16 Total: -1.00 -67.43 356.74 4.20 -63.22 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.10 Total: 24.82 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.44 Total: -23.73 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -1.96 Total: -85.64 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.83 kcal Total: -67.43 4.20 -63.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157593554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.585 kcal (2) G-P(sol) polarization free energy of solvation -67.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds