Wall clock time and date at job start Tue Mar 31 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47626 * 2 1 4 4 H 1.09004 * 109.46834 * 54.26582 * 3 2 1 5 5 C 1.52993 * 109.47445 * 174.26668 * 3 2 1 6 6 C 1.50698 * 109.47402 * 186.40414 * 5 3 2 7 7 O 1.21285 * 119.99915 * 355.82820 * 6 5 3 8 8 N 1.34774 * 120.00523 * 175.83162 * 6 5 3 9 9 C 1.46501 * 120.00524 * 179.97438 * 8 6 5 10 10 H 1.09008 * 109.46658 * 35.00239 * 9 8 6 11 11 C 1.52999 * 109.47055 * 275.00256 * 9 8 6 12 12 C 1.50697 * 109.47139 * 155.00006 * 9 8 6 13 13 H 1.08001 * 120.00310 * 5.40769 * 12 9 8 14 14 C 1.37884 * 119.99663 * 185.40612 * 12 9 8 15 15 N 1.31513 * 120.00065 * 5.70435 * 14 12 9 16 16 Si 1.86806 * 119.99695 * 185.70115 * 14 12 9 17 17 H 1.48498 * 109.46739 * 95.00054 * 16 14 12 18 18 H 1.48499 * 109.46825 * 214.99666 * 16 14 12 19 19 H 1.48502 * 109.47036 * 335.00095 * 16 14 12 20 20 C 1.50702 * 109.47148 * 294.27253 * 3 2 1 21 21 C 1.38234 * 119.99413 * 299.72228 * 20 3 2 22 22 C 1.38238 * 119.99657 * 179.76617 * 21 20 3 23 23 C 1.38237 * 119.99982 * 0.51019 * 22 21 20 24 24 C 1.50695 * 119.99861 * 179.72505 * 23 22 21 25 25 C 1.38242 * 119.99817 * 359.74247 * 23 22 21 26 26 C 1.38225 * 120.00160 * 119.99621 * 20 3 2 27 27 H 1.09000 * 109.47413 * 295.27185 * 1 2 3 28 28 H 1.09001 * 109.47090 * 55.26444 * 1 2 3 29 29 H 1.09004 * 109.47409 * 175.26426 * 1 2 3 30 30 H 1.09008 * 109.46740 * 120.00095 * 2 1 3 31 31 H 1.09001 * 109.47168 * 239.99660 * 2 1 3 32 32 H 1.09001 * 109.47108 * 306.40289 * 5 3 2 33 33 H 1.08999 * 109.47144 * 66.40174 * 5 3 2 34 34 H 0.97002 * 119.99455 * 0.02562 * 8 6 5 35 35 H 1.08993 * 109.47203 * 304.85773 * 11 9 8 36 36 H 1.08997 * 109.47147 * 64.86571 * 11 9 8 37 37 H 1.09005 * 109.47039 * 184.85959 * 11 9 8 38 38 H 0.96997 * 119.99742 * 179.97438 * 15 14 12 39 39 H 1.08003 * 120.00470 * 359.97438 * 21 20 3 40 40 H 1.08001 * 120.00267 * 180.22582 * 22 21 20 41 41 H 1.09001 * 109.46951 * 270.01710 * 24 23 22 42 42 H 1.08991 * 109.47556 * 30.01666 * 24 23 22 43 43 H 1.08999 * 109.47057 * 150.02000 * 24 23 22 44 44 H 1.07997 * 119.99326 * 179.97438 * 25 23 22 45 45 H 1.08002 * 120.00239 * 0.02562 * 26 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5953 1.9850 0.8342 5 6 3.5632 1.4448 0.1441 6 6 4.0507 2.8619 0.3021 7 8 3.2677 3.7848 0.2240 8 7 5.3568 3.1039 0.5301 9 6 5.8308 4.4817 0.6831 10 1 5.0680 5.0743 1.1882 11 6 6.1114 5.0806 -0.6966 12 6 7.0964 4.4895 1.5010 13 1 7.5546 3.5571 1.7960 14 6 7.6695 5.6872 1.8728 15 7 7.0543 6.8198 1.6113 16 14 9.3198 5.7011 2.7480 17 1 10.4056 5.8967 1.7540 18 1 9.3471 6.8099 3.7354 19 1 9.5186 4.4078 3.4503 20 6 1.6569 2.1108 -1.2952 21 6 2.1115 1.6007 -2.4969 22 6 1.7561 2.2109 -3.6853 23 6 0.9548 3.3372 -3.6714 24 6 0.5725 4.0060 -4.9666 25 6 0.5045 3.8503 -2.4693 26 6 0.8556 3.2370 -1.2812 27 1 -0.3634 0.4387 0.9293 28 1 -0.3633 0.5856 -0.8445 29 1 -0.3634 -1.0242 -0.0848 30 1 1.8933 -0.5139 0.8901 31 1 1.8933 -0.5139 -0.8900 32 1 3.8460 0.8633 1.0216 33 1 4.0129 1.0028 -0.7450 34 1 5.9831 2.3658 0.5921 35 1 6.8096 4.4402 -1.2355 36 1 5.1794 5.1547 -1.2569 37 1 6.5452 6.0738 -0.5801 38 1 7.4573 7.6623 1.8732 39 1 2.7416 0.7236 -2.5076 40 1 2.1082 1.8104 -4.6245 41 1 1.3168 4.7613 -5.2190 42 1 0.5272 3.2609 -5.7607 43 1 -0.4030 4.4797 -4.8567 44 1 -0.1212 4.7305 -2.4584 45 1 0.5045 3.6383 -0.3420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157593862.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:18 Heat of formation + Delta-G solvation = -45.567656 kcal Electronic energy + Delta-G solvation = -23253.266803 eV Core-core repulsion = 20041.279454 eV Total energy + Delta-G solvation = -3211.987349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.83817 -38.46056 -35.98702 -34.57153 -32.31560 -31.92212 -30.71125 -30.44836 -28.72683 -26.60027 -25.19552 -24.21127 -22.69120 -21.61174 -21.05041 -19.62744 -19.20883 -16.98453 -16.45412 -15.61131 -15.37043 -15.05565 -14.74031 -14.35647 -14.25263 -14.06296 -13.81366 -13.48961 -13.17656 -13.01651 -12.63729 -12.41521 -12.23681 -12.01903 -11.95341 -11.67001 -11.54854 -11.20430 -11.12905 -10.95761 -10.92468 -10.89428 -10.68429 -10.45135 -10.41321 -10.31240 -10.23605 -9.03803 -8.88431 -8.59246 -8.50215 -8.12580 -7.80813 -6.11005 -4.17804 1.62534 1.72739 3.25457 3.32496 3.34526 3.55001 4.02725 4.16238 4.41079 4.79986 4.90740 5.07123 5.09084 5.13679 5.22653 5.27343 5.30397 5.41803 5.49000 5.62952 5.64202 5.66856 5.73515 5.84707 5.87704 5.90929 5.95968 6.02628 6.05025 6.21669 6.26616 6.37571 6.43267 6.70449 6.81818 6.84182 6.97635 6.99817 7.16314 7.31274 7.51980 7.61862 7.72711 7.92132 8.12770 8.76923 8.84561 9.25141 9.49721 10.97055 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.004003 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.829163 B = 6992.901798 C = 7931.071464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.034 4.034 4 H 0.084 0.916 5 C -0.138 4.138 6 C 0.499 3.501 7 O -0.546 6.546 8 N -0.714 5.714 9 C 0.264 3.736 10 H 0.053 0.947 11 C -0.140 4.140 12 C -0.534 4.534 13 H 0.060 0.940 14 C 0.067 3.933 15 N -0.883 5.883 16 Si 0.898 3.102 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.056 4.056 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.098 4.098 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.079 4.079 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.386 0.614 35 H 0.025 0.975 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.264 0.736 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.695 -12.582 -7.937 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.053 4.053 4 H 0.103 0.897 5 C -0.178 4.178 6 C 0.283 3.717 7 O -0.424 6.424 8 N -0.362 5.362 9 C 0.162 3.838 10 H 0.070 0.930 11 C -0.199 4.199 12 C -0.572 4.572 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.520 5.520 16 Si 0.726 3.274 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.056 4.056 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.098 4.098 24 C -0.167 4.167 25 C -0.141 4.141 26 C -0.097 4.097 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.218 0.782 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.133 0.867 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.225 -11.678 -7.961 18.687 hybrid contribution 1.473 -0.161 0.495 1.563 sum -10.752 -11.839 -7.466 17.650 Atomic orbital electron populations 1.21759 0.95743 1.01194 1.02119 1.21606 0.96187 0.95552 1.01970 1.19989 0.94011 0.95336 0.95931 0.89717 1.21812 0.96177 0.96306 1.03493 1.20409 0.83199 0.90607 0.77449 1.90653 1.54817 1.45999 1.50979 1.46515 1.07437 1.11377 1.70833 1.18684 0.95017 0.76987 0.93069 0.92951 1.21991 0.97889 1.02217 0.97767 1.21227 1.08858 0.92860 1.34266 0.92177 1.24899 0.97742 0.95384 0.95638 1.69972 1.37823 0.97583 1.46609 0.86490 0.83818 0.77798 0.79330 1.20598 1.21114 1.19836 1.19571 0.96545 0.95498 0.93953 1.20865 1.00430 1.00201 0.92171 1.20856 0.99321 0.96449 0.97728 1.19805 0.98655 0.96260 0.95109 1.20742 1.01384 1.00209 0.94413 1.20965 1.01169 0.99764 0.92169 1.20943 0.96786 0.94358 0.97656 0.92794 0.92409 0.93094 0.91708 0.91873 0.89392 0.89551 0.78206 0.95585 0.96311 0.90721 0.92648 0.86730 0.86807 0.91438 0.92026 0.91937 0.86682 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.81 37.16 0.36 -1.12 16 2 C -0.12 -1.18 5.30 -26.74 -0.14 -1.32 16 3 C -0.03 -0.45 1.69 -91.78 -0.15 -0.60 16 4 H 0.08 1.25 7.71 -51.93 -0.40 0.85 16 5 C -0.14 -1.93 5.07 -27.89 -0.14 -2.07 16 6 C 0.50 9.83 7.59 -10.99 -0.08 9.75 16 7 O -0.55 -12.71 13.81 5.55 0.08 -12.63 16 8 N -0.71 -15.00 5.07 -54.93 -0.28 -15.28 16 9 C 0.26 6.84 2.43 -69.08 -0.17 6.67 16 10 H 0.05 1.58 7.55 -51.92 -0.39 1.19 16 11 C -0.14 -3.54 9.37 37.16 0.35 -3.19 16 12 C -0.53 -14.35 8.67 -34.44 -0.30 -14.65 16 13 H 0.06 1.54 7.73 -52.49 -0.41 1.14 16 14 C 0.07 1.83 5.22 -17.82 -0.09 1.73 16 15 N -0.88 -25.43 11.97 55.43 0.66 -24.77 16 16 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C -0.06 -0.81 2.69 -104.63 -0.28 -1.09 16 21 C -0.12 -1.61 8.57 -39.58 -0.34 -1.95 16 22 C -0.13 -1.67 9.70 -39.58 -0.38 -2.05 16 23 C -0.10 -1.33 5.88 -104.62 -0.62 -1.95 16 24 C -0.11 -1.17 10.01 36.00 0.36 -0.81 16 25 C -0.12 -1.78 9.70 -39.58 -0.38 -2.17 16 26 C -0.08 -1.23 8.62 -39.59 -0.34 -1.58 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.62 7.26 -51.93 -0.38 0.25 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.60 7.22 -51.93 -0.37 0.23 16 32 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.08 7.17 -51.93 -0.37 0.70 16 34 H 0.39 7.03 8.53 -40.82 -0.35 6.68 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 2.04 6.65 -51.93 -0.35 1.69 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.11 1.33 7.04 -52.48 -0.37 0.96 16 40 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 43 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 45 H 0.12 1.85 7.95 -52.49 -0.42 1.43 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -31.26 364.41 -9.00 -40.26 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -7.58 Total: 7.49 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -2.35 Total: -16.39 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.39 Total: -40.05 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.26 -9.00 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157593862.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.305 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds